data_2X50
#
_model_server_result.job_id            iJ0juddXLYwA9Q7HeuY4tg 
_model_server_result.datetime_utc      '2024-11-17 12:48:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2x50 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1488}' 
#
_entry.id    2X50 
#
_exptl.entry_id    2X50 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2X50 
_cell.length_a            102.323 
_cell.length_b            102.323 
_cell.length_c            193.561 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2X50 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 K N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            F 
_struct_conn.ptnr1_label_atom_id            AG 
_struct_conn.ptnr1_label_comp_id            AG 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             AG 
_struct_conn.ptnr1_auth_seq_id              1490 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             464 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              444 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.763 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 328 n n 
PA O2A NDP sing 329 n n 
PA O5B NDP sing 330 n n 
PA O3 NDP sing 331 n n 
O2A HOA2 NDP sing 332 n n 
O5B C5B NDP sing 333 n n 
C5B C4B NDP sing 334 n n 
C5B H51A NDP sing 335 n n 
C5B H52A NDP sing 336 n n 
C4B O4B NDP sing 337 n n 
C4B C3B NDP sing 338 n n 
C4B H4B NDP sing 339 n n 
O4B C1B NDP sing 340 n n 
C3B O3B NDP sing 341 n n 
C3B C2B NDP sing 342 n n 
C3B H3B NDP sing 343 n n 
O3B HO3A NDP sing 344 n n 
C2B O2B NDP sing 345 n n 
C2B C1B NDP sing 346 n n 
C2B H2B NDP sing 347 n n 
O2B P2B NDP sing 348 n n 
C1B N9A NDP sing 349 n n 
C1B H1B NDP sing 350 n n 
N9A C8A NDP sing 351 n y 
N9A C4A NDP sing 352 n y 
C8A N7A NDP doub 353 n y 
C8A H8A NDP sing 354 n n 
N7A C5A NDP sing 355 n y 
C5A C6A NDP sing 356 n y 
C5A C4A NDP doub 357 n y 
C6A N6A NDP sing 358 n n 
C6A N1A NDP doub 359 n y 
N6A H61A NDP sing 360 n n 
N6A H62A NDP sing 361 n n 
N1A C2A NDP sing 362 n y 
C2A N3A NDP doub 363 n y 
C2A H2A NDP sing 364 n n 
N3A C4A NDP sing 365 n y 
O3 PN NDP sing 366 n n 
PN O1N NDP doub 367 n n 
PN O2N NDP sing 368 n n 
PN O5D NDP sing 369 n n 
O2N H21N NDP sing 370 n n 
O5D C5D NDP sing 371 n n 
C5D C4D NDP sing 372 n n 
C5D H51N NDP sing 373 n n 
C5D H52N NDP sing 374 n n 
C4D O4D NDP sing 375 n n 
C4D C3D NDP sing 376 n n 
C4D H4D NDP sing 377 n n 
O4D C1D NDP sing 378 n n 
C3D O3D NDP sing 379 n n 
C3D C2D NDP sing 380 n n 
C3D H3D NDP sing 381 n n 
O3D HO3N NDP sing 382 n n 
C2D O2D NDP sing 383 n n 
C2D C1D NDP sing 384 n n 
C2D H2D NDP sing 385 n n 
O2D HO2N NDP sing 386 n n 
C1D N1N NDP sing 387 n n 
C1D H1D NDP sing 388 n n 
N1N C2N NDP sing 389 n n 
N1N C6N NDP sing 390 n n 
C2N C3N NDP doub 391 n n 
C2N H2N NDP sing 392 n n 
C3N C7N NDP sing 393 n n 
C3N C4N NDP sing 394 n n 
C7N O7N NDP doub 395 n n 
C7N N7N NDP sing 396 n n 
N7N H71N NDP sing 397 n n 
N7N H72N NDP sing 398 n n 
C4N C5N NDP sing 399 n n 
C4N H41N NDP sing 400 n n 
C4N H42N NDP sing 401 n n 
C5N C6N NDP doub 402 n n 
C5N H5N NDP sing 403 n n 
C6N H6N NDP sing 404 n n 
P2B O1X NDP doub 405 n n 
P2B O2X NDP sing 406 n n 
P2B O3X NDP sing 407 n n 
O2X HOP2 NDP sing 408 n n 
O3X HOP3 NDP sing 409 n n 
#
_atom_sites.entry_id                     2X50 
_atom_sites.fract_transf_matrix[1][1]    0.009773 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009773 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 1487 1487 FAD FAD . 
D 3 NDP A 1 1488 1488 NDP NDP . 
E 4 AG A 1 1489 1489 AG AG . 
F 4 AG A 1 1490 1490 AG AG . 
G 5 SO4 A 1 1491 1491 SO4 SO4 . 
H 2 FAD B 1 1489 1489 FAD FAD . 
I 4 AG B 1 1490 1490 AG AG . 
J 4 AG B 1 1491 1491 AG AG . 
K 3 NDP B 1 1492 1492 NDP NDP . 
L 5 SO4 B 1 1493 1493 SO4 SO4 . 
M 6 HOH A 1 2001 2001 HOH HOH . 
M 6 HOH A 2 2002 2002 HOH HOH . 
M 6 HOH A 3 2003 2003 HOH HOH . 
M 6 HOH A 4 2004 2004 HOH HOH . 
M 6 HOH A 5 2005 2005 HOH HOH . 
M 6 HOH A 6 2006 2006 HOH HOH . 
M 6 HOH A 7 2007 2007 HOH HOH . 
M 6 HOH A 8 2008 2008 HOH HOH . 
M 6 HOH A 9 2009 2009 HOH HOH . 
N 6 HOH B 1 2001 2001 HOH HOH . 
N 6 HOH B 2 2002 2002 HOH HOH . 
N 6 HOH B 3 2003 2003 HOH HOH . 
N 6 HOH B 4 2004 2004 HOH HOH . 
N 6 HOH B 5 2005 2005 HOH HOH . 
N 6 HOH B 6 2006 2006 HOH HOH . 
N 6 HOH B 7 2007 2007 HOH HOH . 
N 6 HOH B 8 2008 2008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . D 3 -2.908 20.106 -8.13 1 53.83 ? PA NDP 1488 A 1 
HETATM 2 O O1A NDP . . . D 3 -1.968 21.286 -7.513 1 53.65 ? O1A NDP 1488 A 1 
HETATM 3 O O2A NDP . . . D 3 -4.3 20.568 -8.351 1 54.14 ? O2A NDP 1488 A 1 
HETATM 4 O O5B NDP . . . D 3 -2.223 19.588 -9.476 1 53.39 ? O5B NDP 1488 A 1 
HETATM 5 C C5B NDP . . . D 3 -2.518 18.278 -9.96 1 52.84 ? C5B NDP 1488 A 1 
HETATM 6 C C4B NDP . . . D 3 -1.762 17.976 -11.267 1 52.55 ? C4B NDP 1488 A 1 
HETATM 7 O O4B NDP . . . D 3 -2.128 16.651 -11.758 1 52.47 ? O4B NDP 1488 A 1 
HETATM 8 C C3B NDP . . . D 3 -2.211 18.992 -12.319 1 52.41 ? C3B NDP 1488 A 1 
HETATM 9 O O3B NDP . . . D 3 -1.102 19.358 -13.152 1 52.08 ? O3B NDP 1488 A 1 
HETATM 10 C C2B NDP . . . D 3 -3.253 18.237 -13.121 1 52.37 ? C2B NDP 1488 A 1 
HETATM 11 O O2B NDP . . . D 3 -3.166 18.681 -14.46 1 52.99 ? O2B NDP 1488 A 1 
HETATM 12 C C1B NDP . . . D 3 -2.791 16.785 -13.039 1 51.99 ? C1B NDP 1488 A 1 
HETATM 13 N N9A NDP . . . D 3 -3.922 15.825 -13.005 1 51.8 ? N9A NDP 1488 A 1 
HETATM 14 C C8A NDP . . . D 3 -5.117 16.027 -12.445 1 51.67 ? C8A NDP 1488 A 1 
HETATM 15 N N7A NDP . . . D 3 -5.87 14.938 -12.602 1 51.72 ? N7A NDP 1488 A 1 
HETATM 16 C C5A NDP . . . D 3 -5.153 14.035 -13.264 1 51.77 ? C5A NDP 1488 A 1 
HETATM 17 C C6A NDP . . . D 3 -5.404 12.739 -13.706 1 51.63 ? C6A NDP 1488 A 1 
HETATM 18 N N6A NDP . . . D 3 -6.582 12.171 -13.477 1 51.71 ? N6A NDP 1488 A 1 
HETATM 19 N N1A NDP . . . D 3 -4.442 12.069 -14.366 1 51.63 ? N1A NDP 1488 A 1 
HETATM 20 C C2A NDP . . . D 3 -3.262 12.636 -14.598 1 51.81 ? C2A NDP 1488 A 1 
HETATM 21 N N3A NDP . . . D 3 -2.987 13.872 -14.186 1 52.06 ? N3A NDP 1488 A 1 
HETATM 22 C C4A NDP . . . D 3 -3.91 14.596 -13.518 1 51.97 ? C4A NDP 1488 A 1 
HETATM 23 O O3 NDP . . . D 3 -2.841 18.863 -7.077 1 54.05 ? O3 NDP 1488 A 1 
HETATM 24 P PN NDP . . . D 3 -1.525 18.544 -6.178 1 54.4 ? PN NDP 1488 A 1 
HETATM 25 O O1N NDP . . . D 3 -1.781 17.063 -5.563 1 54.05 ? O1N NDP 1488 A 1 
HETATM 26 O O2N NDP . . . D 3 -0.217 18.617 -6.886 1 54.09 ? O2N NDP 1488 A 1 
HETATM 27 O O5D NDP . . . D 3 -1.59 19.556 -4.918 1 54.18 ? O5D NDP 1488 A 1 
HETATM 28 C C5D NDP . . . D 3 -2.833 19.751 -4.229 1 53.9 ? C5D NDP 1488 A 1 
HETATM 29 C C4D NDP . . . D 3 -2.801 21.005 -3.36 1 53.75 ? C4D NDP 1488 A 1 
HETATM 30 O O4D NDP . . . D 3 -1.654 20.942 -2.5 1 53.63 ? O4D NDP 1488 A 1 
HETATM 31 C C3D NDP . . . D 3 -2.537 22.225 -4.231 1 53.75 ? C3D NDP 1488 A 1 
HETATM 32 O O3D NDP . . . D 3 -3.774 22.749 -4.728 1 54.11 ? O3D NDP 1488 A 1 
HETATM 33 C C2D NDP . . . D 3 -1.924 23.2 -3.237 1 53.68 ? C2D NDP 1488 A 1 
HETATM 34 O O2D NDP . . . D 3 -2.948 24.019 -2.665 1 53.88 ? O2D NDP 1488 A 1 
HETATM 35 C C1D NDP . . . D 3 -1.317 22.306 -2.145 1 53.35 ? C1D NDP 1488 A 1 
HETATM 36 N N1N NDP . . . D 3 0.158 22.47 -2.159 1 53.18 ? N1N NDP 1488 A 1 
HETATM 37 C C2N NDP . . . D 3 0.726 23.742 -2.007 1 53.1 ? C2N NDP 1488 A 1 
HETATM 38 C C3N NDP . . . D 3 2.109 23.899 -2.024 1 53.12 ? C3N NDP 1488 A 1 
HETATM 39 C C7N NDP . . . D 3 2.717 25.296 -1.862 1 53.23 ? C7N NDP 1488 A 1 
HETATM 40 O O7N NDP . . . D 3 3.938 25.451 -1.873 1 53.35 ? O7N NDP 1488 A 1 
HETATM 41 N N7N NDP . . . D 3 1.842 26.291 -1.711 1 53.2 ? N7N NDP 1488 A 1 
HETATM 42 C C4N NDP . . . D 3 3.049 22.694 -2.206 1 53.18 ? C4N NDP 1488 A 1 
HETATM 43 C C5N NDP . . . D 3 2.381 21.476 -2.346 1 53.27 ? C5N NDP 1488 A 1 
HETATM 44 C C6N NDP . . . D 3 0.992 21.354 -2.324 1 53.17 ? C6N NDP 1488 A 1 
HETATM 45 P P2B NDP . . . D 3 -4.401 19.404 -15.185 1 53.71 ? P2B NDP 1488 A 1 
HETATM 46 O O1X NDP . . . D 3 -5.571 19.59 -14.067 1 53.47 ? O1X NDP 1488 A 1 
HETATM 47 O O2X NDP . . . D 3 -3.842 20.912 -15.473 1 53.33 ? O2X NDP 1488 A 1 
HETATM 48 O O3X NDP . . . D 3 -4.827 18.67 -16.411 1 53.97 ? O3X NDP 1488 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#