data_2X5I # _model_server_result.job_id p3cJBWZ_Q0DujYusgZZyQQ _model_server_result.datetime_utc '2024-12-23 17:19:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1289}' # _entry.id 2X5I # _exptl.entry_id 2X5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.318 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 119 _cell.angle_beta 100.1 _cell.angle_gamma 108.4 _cell.entry_id 2X5I _cell.length_a 297.1 _cell.length_b 297.7 _cell.length_c 300.6 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-MERIC 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 (1-60) A,B,C,D,E 2 1 A,B,C,D,E 3 (1-5) A,B,C,D,E 4 (1,2,6,10,23,24) A,B,C,D,E 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.434344 0.14511 -0.888982 0.344357 0.938719 -0.015019 0.832324 -0.31265 -0.457696 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.855185 0.517587 -0.027611 -0.238 0.344798 -0.908004 -0.460451 0.783082 0.418052 0 0 0 3 'point symmetry operation' ? ? 0.620869 0.599474 -0.505127 0.132495 -0.715342 -0.686098 -0.772637 0.35905 -0.523561 0 0 0 4 'point symmetry operation' ? ? 0.620869 0.132495 -0.772637 0.599474 -0.715342 0.35905 -0.505127 -0.686098 -0.523561 0 0 0 5 'point symmetry operation' ? ? 0.855185 -0.238 -0.460451 0.517587 0.344798 0.783082 -0.027611 -0.908004 0.418052 0 0 0 6 'point symmetry operation' ? ? 0.385527 -0.520453 -0.761904 -0.520453 -0.804499 0.286198 -0.761904 0.286198 -0.581028 0 0 0 7 'point symmetry operation' ? ? 0.804384 -0.57654 0.143413 -0.385393 -0.322653 0.864504 -0.452149 -0.750664 -0.481731 0 0 0 8 'point symmetry operation' ? ? 0.759079 0.329854 0.561245 -0.650852 0.366254 0.665019 0.013801 -0.870089 0.492701 0 0 0 9 'point symmetry operation' ? ? 0.312222 0.946123 -0.085838 -0.949976 0.310175 -0.036577 -0.007981 0.092964 0.995637 0 0 0 10 'point symmetry operation' ? ? 0.081354 0.420605 -0.903589 -0.869385 -0.41339 -0.270701 -0.487393 0.807589 0.332036 0 0 0 11 'point symmetry operation' ? ? -0.762837 0.646508 -0.010344 0.646508 0.762386 -0.028197 -0.010344 -0.028197 -0.999549 0 0 0 12 'point symmetry operation' ? ? -0.801473 -0.18002 -0.570293 0.38442 0.575413 -0.721888 0.458108 -0.797805 -0.391974 0 0 0 13 'point symmetry operation' ? ? -0.37997 -0.923489 -0.052823 0.524196 -0.167926 -0.834877 0.76213 -0.344918 0.547896 0 0 0 14 'point symmetry operation' ? ? -0.080831 -0.55645 0.82694 0.87267 -0.440361 -0.211018 0.481573 0.704589 0.521192 0 0 0 15 'point symmetry operation' ? ? -0.317456 0.413862 0.853194 0.948264 0.134603 0.287537 0.004158 0.900333 -0.435181 0 0 0 16 'point symmetry operation' ? ? -0.622691 -0.126055 0.772248 -0.126055 -0.957886 -0.258001 0.772248 -0.258001 0.580577 0 0 0 17 'point symmetry operation' ? ? -0.858096 0.238973 0.454491 0.238973 -0.597557 0.765387 0.454491 0.765387 0.455654 0 0 0 18 'point symmetry operation' ? ? -0.999978 -0.005838 -0.003294 -0.005839 0.517014 0.855957 -0.003294 0.855957 -0.517036 0 0 0 19 'point symmetry operation' ? ? -0.852259 -0.522169 0.031535 -0.522169 0.845528 -0.111455 0.031535 -0.111455 -0.993269 0 0 0 20 'point symmetry operation' ? ? -0.619083 -0.596467 0.510846 -0.596467 -0.06601 -0.799919 0.510846 -0.799919 -0.314907 0 0 0 21 'point symmetry operation' ? ? -0.224468 0.967086 -0.11983 -0.394611 -0.202642 -0.896224 -0.891008 -0.153887 0.42711 0 0 0 22 'point symmetry operation' ? ? -0.366952 0.123431 -0.922015 0.123431 -0.975934 -0.179773 -0.922015 -0.179773 0.342886 0 0 0 23 'point symmetry operation' ? ? 0.081354 -0.869385 -0.487393 0.420605 -0.41339 0.807589 -0.903589 -0.270701 0.332036 0 0 0 24 'point symmetry operation' ? ? 0.500907 -0.639323 0.583403 0.086227 0.707572 0.70136 -0.861195 -0.301012 0.409555 0 0 0 25 'point symmetry operation' ? ? 0.311899 0.495678 0.810569 -0.417605 0.837822 -0.351654 -0.85342 -0.228817 0.468313 0 0 0 26 'point symmetry operation' ? ? -0.498562 -0.69549 0.517425 0.636169 0.111904 0.763392 -0.588834 0.709768 0.386658 0 0 0 27 'point symmetry operation' ? ? -0.499085 -0.092666 0.861584 0.165904 0.965656 0.199962 -0.850523 0.242738 -0.466571 0 0 0 28 'point symmetry operation' ? ? -0.801473 0.38442 0.458108 -0.18002 0.575413 -0.797805 -0.570293 -0.721888 -0.391974 0 0 0 29 'point symmetry operation' ? ? -0.987835 0.076451 -0.135412 0.076451 -0.519522 -0.85103 -0.135412 -0.85103 0.507358 0 0 0 30 'point symmetry operation' ? ? -0.800627 -0.59097 -0.098752 0.580884 -0.805986 0.113843 -0.14687 0.033782 0.988579 0 0 0 31 'point symmetry operation' ? ? 0.797701 0.595551 0.094828 0.179285 -0.38434 0.905616 0.575787 -0.705409 -0.413361 0 0 0 32 'point symmetry operation' ? ? 0.496777 0.692483 -0.523145 -0.172197 0.669448 0.722626 0.850624 -0.268899 0.45181 0 0 0 33 'point symmetry operation' ? ? 0.500907 0.086227 -0.861195 -0.639323 0.707572 -0.301012 0.583403 0.70136 0.409555 0 0 0 34 'point symmetry operation' ? ? 0.804384 -0.385393 -0.452149 -0.57654 -0.322653 -0.750664 0.143413 0.864504 -0.481731 0 0 0 35 'point symmetry operation' ? ? 0.987813 -0.070613 0.138706 -0.070613 -0.997492 -0.004927 0.138706 -0.004927 -0.990321 0 0 0 36 'point symmetry operation' ? ? -0.074671 -0.867146 -0.492424 -0.420842 0.475077 -0.772783 0.904055 0.149528 -0.400406 0 0 0 37 'point symmetry operation' ? ? 0.369261 -0.723247 0.583575 -0.117138 -0.65917 -0.742815 0.921914 0.205934 -0.328125 0 0 0 38 'point symmetry operation' ? ? 0.219211 0.398738 0.89048 0.398738 -0.869594 0.291228 0.89048 0.291228 -0.349617 0 0 0 39 'point symmetry operation' ? ? -0.317456 0.948264 0.004158 0.413862 0.134603 0.900333 0.853194 0.287537 -0.435181 0 0 0 40 'point symmetry operation' ? ? -0.499085 0.165904 -0.850523 -0.092666 0.965656 0.242738 0.861584 0.199962 -0.466571 0 0 0 41 'point symmetry operation' ? ? -0.224468 -0.394611 -0.891008 0.967086 -0.202642 -0.153887 -0.11983 -0.896224 0.42711 0 0 0 42 'point symmetry operation' ? ? 0.312222 -0.949976 -0.007981 0.946123 0.310175 0.092964 -0.085838 -0.036577 0.995637 0 0 0 43 'point symmetry operation' ? ? 0.496777 -0.172197 0.850624 0.692483 0.669448 -0.268899 -0.523145 0.722626 0.45181 0 0 0 44 'point symmetry operation' ? ? 0.074148 0.863861 0.498244 0.556687 0.378674 -0.739395 -0.827406 0.332191 -0.452822 0 0 0 45 'point symmetry operation' ? ? -0.371606 0.726401 -0.578144 0.726401 -0.160307 -0.668314 -0.578144 -0.668314 -0.468088 0 0 0 46 'point symmetry operation' ? ? 0.797701 0.179285 0.575787 0.595551 -0.38434 -0.705409 0.094828 0.905616 -0.413361 0 0 0 47 'point symmetry operation' ? ? 0.37439 0.925585 0.055892 0.925585 -0.376663 0.03764 0.055892 0.03764 -0.997727 0 0 0 48 'point symmetry operation' ? ? 0.074148 0.556687 -0.827406 0.863861 0.378674 0.332191 0.498244 -0.739395 -0.452822 0 0 0 49 'point symmetry operation' ? ? 0.311899 -0.417605 -0.85342 0.495678 0.837822 -0.228817 0.810569 -0.351654 0.468313 0 0 0 50 'point symmetry operation' ? ? 0.759079 -0.650852 0.013801 0.329854 0.366254 -0.870089 0.561245 0.665019 0.492701 0 0 0 51 'point symmetry operation' ? ? -0.074671 -0.420842 0.904055 -0.867146 0.475077 0.149528 -0.492424 -0.772783 -0.400406 0 0 0 52 'point symmetry operation' ? ? -0.37997 0.524196 0.76213 -0.923489 -0.167926 -0.344918 -0.052823 -0.834877 0.547896 0 0 0 53 'point symmetry operation' ? ? -0.800627 0.580884 -0.14687 -0.59097 -0.805986 0.033782 -0.098752 0.113843 0.988579 0 0 0 54 'point symmetry operation' ? ? -0.755307 -0.329118 -0.566738 -0.329118 -0.557326 0.762278 -0.566738 0.762278 0.312634 0 0 0 55 'point symmetry operation' ? ? -0.306642 -0.948219 0.08277 -0.499805 0.234414 0.833813 -0.81004 0.214313 -0.545806 0 0 0 56 'point symmetry operation' ? ? -0.498562 0.636169 -0.588834 -0.69549 0.111904 0.709768 0.517425 0.763392 0.386658 0 0 0 57 'point symmetry operation' ? ? -0.306642 -0.499805 -0.81004 -0.948219 0.234414 0.214313 0.08277 0.833813 -0.545806 0 0 0 58 'point symmetry operation' ? ? 0.229702 -0.965374 0.123653 -0.965374 -0.242136 -0.097073 0.123653 -0.097073 -0.987566 0 0 0 59 'point symmetry operation' ? ? 0.369261 -0.117138 0.921914 -0.723247 -0.65917 0.205934 0.583575 -0.742815 -0.328125 0 0 0 60 'point symmetry operation' ? ? -0.080831 0.87267 0.481573 -0.55645 -0.440361 0.704589 0.82694 -0.211018 0.521192 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H24 O2' _chem_comp.formula_weight 200.318 _chem_comp.id DAO _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 DAO doub 83 n n O2 C1 DAO sing 84 n n O2 HO2 DAO sing 85 n n C1 C2 DAO sing 86 n n C2 C3 DAO sing 87 n n C2 H21 DAO sing 88 n n C2 H22 DAO sing 89 n n C3 C4 DAO sing 90 n n C3 H31 DAO sing 91 n n C3 H32 DAO sing 92 n n C4 C5 DAO sing 93 n n C4 H41 DAO sing 94 n n C4 H42 DAO sing 95 n n C5 C6 DAO sing 96 n n C5 H51 DAO sing 97 n n C5 H52 DAO sing 98 n n C6 C7 DAO sing 99 n n C6 H61 DAO sing 100 n n C6 H62 DAO sing 101 n n C7 C8 DAO sing 102 n n C7 H71 DAO sing 103 n n C7 H72 DAO sing 104 n n C8 C9 DAO sing 105 n n C8 H81 DAO sing 106 n n C8 H82 DAO sing 107 n n C9 C10 DAO sing 108 n n C9 H91 DAO sing 109 n n C9 H92 DAO sing 110 n n C10 C11 DAO sing 111 n n C10 H101 DAO sing 112 n n C10 H102 DAO sing 113 n n C11 C12 DAO sing 114 n n C11 H111 DAO sing 115 n n C11 H112 DAO sing 116 n n C12 H121 DAO sing 117 n n C12 H122 DAO sing 118 n n C12 H123 DAO sing 119 n n # _atom_sites.entry_id 2X5I _atom_sites.fract_transf_matrix[1][1] 0.003366 _atom_sites.fract_transf_matrix[1][2] 0.00112 _atom_sites.fract_transf_matrix[1][3] 0.001528 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00354 _atom_sites.fract_transf_matrix[2][3] 0.002509 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id DAO _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1289 _pdbx_nonpoly_scheme.auth_seq_num 1289 _pdbx_nonpoly_scheme.pdb_mon_id DAO _pdbx_nonpoly_scheme.auth_mon_id DAO _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 DAO . . . E 5 100.867 15.732 -79.738 1 55.99 ? O1 DAO 1289 A 1 HETATM 2 O O2 DAO . . . E 5 99.244 15.708 -81.249 1 54.65 ? O2 DAO 1289 A 1 HETATM 3 C C1 DAO . . . E 5 99.969 16.332 -80.301 1 54.25 ? C1 DAO 1289 A 1 HETATM 4 C C2 DAO . . . E 5 99.669 17.783 -79.97 1 52.42 ? C2 DAO 1289 A 1 HETATM 5 C C3 DAO . . . E 5 100.512 18.287 -78.789 1 48.35 ? C3 DAO 1289 A 1 HETATM 6 C C4 DAO . . . E 5 99.972 19.646 -78.346 1 46.81 ? C4 DAO 1289 A 1 HETATM 7 C C5 DAO . . . E 5 100.992 20.345 -77.451 1 44.21 ? C5 DAO 1289 A 1 HETATM 8 C C6 DAO . . . E 5 100.554 21.792 -77.228 1 42.63 ? C6 DAO 1289 A 1 HETATM 9 C C7 DAO . . . E 5 101.714 22.584 -76.635 1 42.5 ? C7 DAO 1289 A 1 HETATM 10 C C8 DAO . . . E 5 101.325 24.055 -76.496 1 41.54 ? C8 DAO 1289 A 1 HETATM 11 C C9 DAO . . . E 5 102.45 24.796 -75.775 1 41.55 ? C9 DAO 1289 A 1 HETATM 12 C C10 DAO . . . E 5 101.911 26.087 -75.162 1 41.6 ? C10 DAO 1289 A 1 HETATM 13 C C11 DAO . . . E 5 102.976 26.694 -74.247 1 41.69 ? C11 DAO 1289 A 1 HETATM 14 C C12 DAO . . . E 5 102.351 27.804 -73.404 1 42.05 ? C12 DAO 1289 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #