data_2X5U # _model_server_result.job_id fSJWfNC-jKWdRAKeldXlwg _model_server_result.datetime_utc '2024-10-19 11:41:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1328}' # _entry.id 2X5U # _exptl.entry_id 2X5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 648.999 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MENAQUINONE-7 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2X5U _cell.length_a 85.693 _cell.length_b 143.47 _cell.length_c 177.998 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 87 C CYS 87 1_555 E CAB HEC . C HEC 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? covale ? covale2 A SG CYS 90 C CYS 90 1_555 E CAC HEC . C HEC 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? covale ? covale3 A SG CYS 132 C CYS 132 1_555 F CAB HEC . C HEC 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? covale ? covale4 A SG CYS 135 C CYS 135 1_555 F CAC HEC . C HEC 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? covale ? covale5 A SG CYS 244 C CYS 244 1_555 G CAB HEC . C HEC 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? covale ? covale6 A SG CYS 247 C CYS 247 1_555 G CAC HEC . C HEC 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? covale ? covale7 A SG CYS 305 C CYS 305 1_555 H CAB HEC . C HEC 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? covale ? covale8 A SG CYS 308 C CYS 308 1_555 H CAC HEC . C HEC 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? covale ? covale9 B C FME 1 H FME 1 1_555 B N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A SD MET 74 C MET 74 1_555 E FE HEC . C HEC 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 E FE HEC . C HEC 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 F FE HEC . C HEC 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 H FE HEC . C HEC 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 F FE HEC . C HEC 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 G FE HEC . C HEC 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 G FE HEC . C HEC 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 H FE HEC . C HEC 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc9 C NE2 HIS 191 L HIS 190 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc10 C NE2 HIS 231 L HIS 230 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc11 D NE2 HIS 218 M HIS 217 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc12 D OE1 GLU 233 M GLU 232 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc13 D OE2 GLU 233 M GLU 232 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc14 D NE2 HIS 265 M HIS 264 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C46 H64 O2' _chem_comp.formula_weight 648.999 _chem_comp.id MQ7 _chem_comp.mon_nstd_flag . _chem_comp.name MENAQUINONE-7 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MQ7 doub 630 n n C1 C2 MQ7 sing 631 n n C1 C10 MQ7 sing 632 n n C2 C2M MQ7 sing 633 n n C2 C3 MQ7 doub 634 n n C2M H2M1 MQ7 sing 635 n n C2M H2M2 MQ7 sing 636 n n C2M H2M3 MQ7 sing 637 n n C3 C4 MQ7 sing 638 n n C3 C11 MQ7 sing 639 n n C4 O4 MQ7 doub 640 n n C4 C5 MQ7 sing 641 n n C5 C6 MQ7 doub 642 n y C5 C10 MQ7 sing 643 n y C6 C7 MQ7 sing 644 n y C6 H6 MQ7 sing 645 n n C7 C8 MQ7 doub 646 n y C7 H7 MQ7 sing 647 n n C8 C9 MQ7 sing 648 n y C8 H8 MQ7 sing 649 n n C9 C10 MQ7 doub 650 n y C9 H9 MQ7 sing 651 n n C11 C12 MQ7 sing 652 n n C11 H111 MQ7 sing 653 n n C11 H112 MQ7 sing 654 n n C12 C13 MQ7 doub 655 e n C12 H12 MQ7 sing 656 n n C13 C14 MQ7 sing 657 n n C13 C15 MQ7 sing 658 n n C14 H141 MQ7 sing 659 n n C14 H142 MQ7 sing 660 n n C14 H143 MQ7 sing 661 n n C15 C16 MQ7 sing 662 n n C15 H151 MQ7 sing 663 n n C15 H152 MQ7 sing 664 n n C16 C17 MQ7 sing 665 n n C16 H161 MQ7 sing 666 n n C16 H162 MQ7 sing 667 n n C17 C18 MQ7 doub 668 e n C17 H17 MQ7 sing 669 n n C18 C19 MQ7 sing 670 n n C18 C20 MQ7 sing 671 n n C19 H191 MQ7 sing 672 n n C19 H192 MQ7 sing 673 n n C19 H193 MQ7 sing 674 n n C20 C21 MQ7 sing 675 n n C20 H201 MQ7 sing 676 n n C20 H202 MQ7 sing 677 n n C21 C22 MQ7 sing 678 n n C21 H211 MQ7 sing 679 n n C21 H212 MQ7 sing 680 n n C22 C23 MQ7 doub 681 e n C22 H22 MQ7 sing 682 n n C23 C24 MQ7 sing 683 n n C23 C25 MQ7 sing 684 n n C24 H241 MQ7 sing 685 n n C24 H242 MQ7 sing 686 n n C24 H243 MQ7 sing 687 n n C25 C26 MQ7 sing 688 n n C25 H251 MQ7 sing 689 n n C25 H252 MQ7 sing 690 n n C26 C27 MQ7 sing 691 n n C26 H261 MQ7 sing 692 n n C26 H262 MQ7 sing 693 n n C27 C28 MQ7 doub 694 e n C27 H27 MQ7 sing 695 n n C28 C29 MQ7 sing 696 n n C28 C30 MQ7 sing 697 n n C29 H291 MQ7 sing 698 n n C29 H292 MQ7 sing 699 n n C29 H293 MQ7 sing 700 n n C30 C31 MQ7 sing 701 n n C30 H301 MQ7 sing 702 n n C30 H302 MQ7 sing 703 n n C31 C32 MQ7 sing 704 n n C31 H311 MQ7 sing 705 n n C31 H312 MQ7 sing 706 n n C32 C33 MQ7 doub 707 e n C32 H32 MQ7 sing 708 n n C33 C34 MQ7 sing 709 n n C33 C35 MQ7 sing 710 n n C34 H341 MQ7 sing 711 n n C34 H342 MQ7 sing 712 n n C34 H343 MQ7 sing 713 n n C35 C36 MQ7 sing 714 n n C35 H351 MQ7 sing 715 n n C35 H352 MQ7 sing 716 n n C36 C37 MQ7 sing 717 n n C36 H361 MQ7 sing 718 n n C36 H362 MQ7 sing 719 n n C37 C38 MQ7 doub 720 e n C37 H37 MQ7 sing 721 n n C38 C39 MQ7 sing 722 n n C38 C40 MQ7 sing 723 n n C39 H391 MQ7 sing 724 n n C39 H392 MQ7 sing 725 n n C39 H393 MQ7 sing 726 n n C40 C41 MQ7 sing 727 n n C40 H401 MQ7 sing 728 n n C40 H402 MQ7 sing 729 n n C41 C42 MQ7 sing 730 n n C41 H411 MQ7 sing 731 n n C41 H412 MQ7 sing 732 n n C42 C43 MQ7 doub 733 n n C42 H42 MQ7 sing 734 n n C43 C44 MQ7 sing 735 n n C43 C45 MQ7 sing 736 n n C44 H441 MQ7 sing 737 n n C44 H442 MQ7 sing 738 n n C44 H443 MQ7 sing 739 n n C45 H451 MQ7 sing 740 n n C45 H452 MQ7 sing 741 n n C45 H453 MQ7 sing 742 n n # _atom_sites.entry_id 2X5U _atom_sites.fract_transf_matrix[1][1] 0.01167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEC C 1 1333 1333 HEC HEM . F 5 HEC C 1 1334 1334 HEC HEM . G 5 HEC C 1 1335 1335 HEC HEM . H 5 HEC C 1 1336 1336 HEC HEM . I 6 BCB L 1 1274 1274 BCB BCB . J 6 BCB L 1 1275 1275 BCB BCB . K 7 BPB L 1 1276 1276 BPB BPB . L 6 BCB M 1 1324 1324 BCB BCB . M 6 BCB M 1 1325 1325 BCB BCB . N 7 BPB M 1 1326 1326 BPB BPB . O 8 FE2 M 1 1327 1327 FE2 FE2 . P 9 MQ7 M 1 1328 1328 MQ7 MQ7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MQ7 . . . P 9 22.601 29.988 21.595 1 28.88 ? C1 MQ7 1328 M 1 HETATM 2 O O1 MQ7 . . . P 9 23.756 30.459 21.616 1 29.49 ? O1 MQ7 1328 M 1 HETATM 3 C C2 MQ7 . . . P 9 21.953 29.525 22.854 1 28.53 ? C2 MQ7 1328 M 1 HETATM 4 C C2M MQ7 . . . P 9 22.708 29.633 24.156 1 27.6 ? C2M MQ7 1328 M 1 HETATM 5 C C3 MQ7 . . . P 9 20.569 28.965 22.807 1 29.04 ? C3 MQ7 1328 M 1 HETATM 6 C C4 MQ7 . . . P 9 19.846 28.871 21.503 1 29.14 ? C4 MQ7 1328 M 1 HETATM 7 O O4 MQ7 . . . P 9 18.686 28.399 21.456 1 29.27 ? O4 MQ7 1328 M 1 HETATM 8 C C5 MQ7 . . . P 9 20.505 29.337 20.248 1 29.2 ? C5 MQ7 1328 M 1 HETATM 9 C C6 MQ7 . . . P 9 19.856 29.262 19.015 1 29.55 ? C6 MQ7 1328 M 1 HETATM 10 C C7 MQ7 . . . P 9 20.498 29.709 17.856 1 29.52 ? C7 MQ7 1328 M 1 HETATM 11 C C8 MQ7 . . . P 9 21.793 30.231 17.903 1 29.37 ? C8 MQ7 1328 M 1 HETATM 12 C C9 MQ7 . . . P 9 22.484 30.327 19.112 1 29.11 ? C9 MQ7 1328 M 1 HETATM 13 C C10 MQ7 . . . P 9 21.884 29.896 20.295 1 29.04 ? C10 MQ7 1328 M 1 HETATM 14 C C11 MQ7 . . . P 9 19.879 28.485 24.07 1 29.85 ? C11 MQ7 1328 M 1 HETATM 15 C C12 MQ7 . . . P 9 19.432 29.652 24.935 1 30.08 ? C12 MQ7 1328 M 1 HETATM 16 C C13 MQ7 . . . P 9 18.148 30.018 25.116 1 30.09 ? C13 MQ7 1328 M 1 HETATM 17 C C14 MQ7 . . . P 9 17.022 29.283 24.443 1 30.18 ? C14 MQ7 1328 M 1 HETATM 18 C C15 MQ7 . . . P 9 17.85 31.203 26.01 1 30.42 ? C15 MQ7 1328 M 1 HETATM 19 C C16 MQ7 . . . P 9 17.146 30.782 27.303 1 30.8 ? C16 MQ7 1328 M 1 HETATM 20 C C17 MQ7 . . . P 9 18.018 29.87 28.146 1 30.75 ? C17 MQ7 1328 M 1 HETATM 21 C C18 MQ7 . . . P 9 18.664 30.268 29.26 1 30.78 ? C18 MQ7 1328 M 1 HETATM 22 C C19 MQ7 . . . P 9 18.576 31.687 29.754 1 30.95 ? C19 MQ7 1328 M 1 HETATM 23 C C20 MQ7 . . . P 9 19.511 29.271 30.023 1 30.78 ? C20 MQ7 1328 M 1 HETATM 24 C C21 MQ7 . . . P 9 18.724 28.633 31.163 1 30.89 ? C21 MQ7 1328 M 1 HETATM 25 C C22 MQ7 . . . P 9 18.152 27.311 30.702 1 31.59 ? C22 MQ7 1328 M 1 HETATM 26 C C23 MQ7 . . . P 9 17.1 26.702 31.288 1 32.23 ? C23 MQ7 1328 M 1 HETATM 27 C C24 MQ7 . . . P 9 16.392 27.314 32.467 1 32.34 ? C24 MQ7 1328 M 1 HETATM 28 C C25 MQ7 . . . P 9 16.616 25.382 30.722 1 32.54 ? C25 MQ7 1328 M 1 HETATM 29 C C26 MQ7 . . . P 9 16.793 24.221 31.697 1 32.96 ? C26 MQ7 1328 M 1 HETATM 30 C C27 MQ7 . . . P 9 16.147 22.997 31.088 1 33.38 ? C27 MQ7 1328 M 1 HETATM 31 C C28 MQ7 . . . P 9 16.698 21.771 31.125 1 33.89 ? C28 MQ7 1328 M 1 HETATM 32 C C29 MQ7 . . . P 9 18.027 21.534 31.789 1 33.41 ? C29 MQ7 1328 M 1 HETATM 33 C C30 MQ7 . . . P 9 15.965 20.618 30.469 1 34.65 ? C30 MQ7 1328 M 1 HETATM 34 C C31 MQ7 . . . P 9 15.144 19.803 31.471 1 35.47 ? C31 MQ7 1328 M 1 HETATM 35 C C32 MQ7 . . . P 9 14.781 18.466 30.852 1 35.8 ? C32 MQ7 1328 M 1 HETATM 36 C C33 MQ7 . . . P 9 15.19 17.276 31.336 1 36.15 ? C33 MQ7 1328 M 1 HETATM 37 C C34 MQ7 . . . P 9 16.046 17.176 32.567 1 36.23 ? C34 MQ7 1328 M 1 HETATM 38 C C35 MQ7 . . . P 9 14.77 16 30.643 1 36.5 ? C35 MQ7 1328 M 1 HETATM 39 C C36 MQ7 . . . P 9 15.646 15.673 29.436 1 37.23 ? C36 MQ7 1328 M 1 HETATM 40 C C37 MQ7 . . . P 9 14.833 14.773 28.527 1 38.3 ? C37 MQ7 1328 M 1 HETATM 41 C C38 MQ7 . . . P 9 15.19 13.539 28.105 1 38.76 ? C38 MQ7 1328 M 1 HETATM 42 C C39 MQ7 . . . P 9 16.501 12.907 28.493 1 38.35 ? C39 MQ7 1328 M 1 HETATM 43 C C40 MQ7 . . . P 9 14.241 12.773 27.205 1 39.18 ? C40 MQ7 1328 M 1 HETATM 44 C C41 MQ7 . . . P 9 13.141 12.097 28.023 1 39.85 ? C41 MQ7 1328 M 1 HETATM 45 C C42 MQ7 . . . P 9 11.865 12.917 27.991 1 40.73 ? C42 MQ7 1328 M 1 HETATM 46 C C43 MQ7 . . . P 9 11.065 13.107 29.067 1 41.3 ? C43 MQ7 1328 M 1 HETATM 47 C C44 MQ7 . . . P 9 9.821 13.94 28.92 1 41.1 ? C44 MQ7 1328 M 1 HETATM 48 C C45 MQ7 . . . P 9 11.378 12.509 30.414 1 41.12 ? C45 MQ7 1328 M 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #