data_2X5U
#
_model_server_result.job_id            0bm_9X46BOoB1jYbZfeIBA 
_model_server_result.datetime_utc      '2024-10-19 11:48:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2x5u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1336}' 
#
_entry.id    2X5U 
#
_exptl.entry_id    2X5U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2X5U 
_cell.length_a            85.693 
_cell.length_b            143.47 
_cell.length_c            177.998 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2X5U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 87 C CYS 87 1_555 E CAB HEC . C HEC 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? 
covale ? covale2 A SG CYS 90 C CYS 90 1_555 E CAC HEC . C HEC 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
covale ? covale3 A SG CYS 132 C CYS 132 1_555 F CAB HEC . C HEC 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? 
covale ? covale4 A SG CYS 135 C CYS 135 1_555 F CAC HEC . C HEC 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? 
covale ? covale5 A SG CYS 244 C CYS 244 1_555 G CAB HEC . C HEC 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? 
covale ? covale6 A SG CYS 247 C CYS 247 1_555 G CAC HEC . C HEC 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? 
covale ? covale7 A SG CYS 305 C CYS 305 1_555 H CAB HEC . C HEC 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? 
covale ? covale8 A SG CYS 308 C CYS 308 1_555 H CAC HEC . C HEC 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
covale ? covale9 B C FME 1 H FME 1 1_555 B N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A SD MET 74 C MET 74 1_555 E FE HEC . C HEC 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 E FE HEC . C HEC 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc3 A SD MET 110 C MET 110 1_555 F FE HEC . C HEC 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 H FE HEC . C HEC 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 F FE HEC . C HEC 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc6 A SD MET 233 C MET 233 1_555 G FE HEC . C HEC 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 G FE HEC . C HEC 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 H FE HEC . C HEC 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc9 C NE2 HIS 191 L HIS 190 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc10 C NE2 HIS 231 L HIS 230 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc11 D NE2 HIS 218 M HIS 217 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc12 D OE1 GLU 233 M GLU 232 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc13 D OE2 GLU 233 M GLU 232 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc14 D NE2 HIS 265 M HIS 264 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 440 n n 
FE NB HEC sing 441 n n 
FE NC HEC sing 442 n n 
FE ND HEC sing 443 n n 
CHA C1A HEC doub 444 n n 
CHA C4D HEC sing 445 n n 
CHA HHA HEC sing 446 n n 
CHB C4A HEC doub 447 n n 
CHB C1B HEC sing 448 n n 
CHB HHB HEC sing 449 n n 
CHC C4B HEC doub 450 n n 
CHC C1C HEC sing 451 n n 
CHC HHC HEC sing 452 n n 
CHD C4C HEC doub 453 n n 
CHD C1D HEC sing 454 n n 
CHD HHD HEC sing 455 n n 
NA C1A HEC sing 456 n y 
NA C4A HEC sing 457 n y 
C1A C2A HEC sing 458 n y 
C2A C3A HEC doub 459 n y 
C2A CAA HEC sing 460 n n 
C3A C4A HEC sing 461 n y 
C3A CMA HEC sing 462 n n 
CMA HMA1 HEC sing 463 n n 
CMA HMA2 HEC sing 464 n n 
CMA HMA3 HEC sing 465 n n 
CAA CBA HEC sing 466 n n 
CAA HAA1 HEC sing 467 n n 
CAA HAA2 HEC sing 468 n n 
CBA CGA HEC sing 469 n n 
CBA HBA1 HEC sing 470 n n 
CBA HBA2 HEC sing 471 n n 
CGA O1A HEC doub 472 n n 
CGA O2A HEC sing 473 n n 
O2A H2A HEC sing 474 n n 
NB C1B HEC sing 475 n y 
NB C4B HEC sing 476 n y 
C1B C2B HEC doub 477 n y 
C2B C3B HEC sing 478 n y 
C2B CMB HEC sing 479 n n 
C3B C4B HEC sing 480 n y 
C3B CAB HEC doub 481 e n 
CMB HMB1 HEC sing 482 n n 
CMB HMB2 HEC sing 483 n n 
CMB HMB3 HEC sing 484 n n 
CAB CBB HEC sing 485 n n 
CAB HAB HEC sing 486 n n 
CBB HBB1 HEC sing 487 n n 
CBB HBB2 HEC sing 488 n n 
CBB HBB3 HEC sing 489 n n 
NC C1C HEC sing 490 n y 
NC C4C HEC sing 491 n y 
C1C C2C HEC doub 492 n y 
C2C C3C HEC sing 493 n y 
C2C CMC HEC sing 494 n n 
C3C C4C HEC sing 495 n y 
C3C CAC HEC doub 496 e n 
CMC HMC1 HEC sing 497 n n 
CMC HMC2 HEC sing 498 n n 
CMC HMC3 HEC sing 499 n n 
CAC CBC HEC sing 500 n n 
CAC HAC HEC sing 501 n n 
CBC HBC1 HEC sing 502 n n 
CBC HBC2 HEC sing 503 n n 
CBC HBC3 HEC sing 504 n n 
ND C1D HEC sing 505 n y 
ND C4D HEC sing 506 n y 
C1D C2D HEC doub 507 n y 
C2D C3D HEC sing 508 n y 
C2D CMD HEC sing 509 n n 
C3D C4D HEC doub 510 n y 
C3D CAD HEC sing 511 n n 
CMD HMD1 HEC sing 512 n n 
CMD HMD2 HEC sing 513 n n 
CMD HMD3 HEC sing 514 n n 
CAD CBD HEC sing 515 n n 
CAD HAD1 HEC sing 516 n n 
CAD HAD2 HEC sing 517 n n 
CBD CGD HEC sing 518 n n 
CBD HBD1 HEC sing 519 n n 
CBD HBD2 HEC sing 520 n n 
CGD O1D HEC doub 521 n n 
CGD O2D HEC sing 522 n n 
O2D H2D HEC sing 523 n n 
#
_atom_sites.entry_id                     2X5U 
_atom_sites.fract_transf_matrix[1][1]    0.01167 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00697 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEC C 1 1333 1333 HEC HEM . 
F 5 HEC C 1 1334 1334 HEC HEM . 
G 5 HEC C 1 1335 1335 HEC HEM . 
H 5 HEC C 1 1336 1336 HEC HEM . 
I 6 BCB L 1 1274 1274 BCB BCB . 
J 6 BCB L 1 1275 1275 BCB BCB . 
K 7 BPB L 1 1276 1276 BPB BPB . 
L 6 BCB M 1 1324 1324 BCB BCB . 
M 6 BCB M 1 1325 1325 BCB BCB . 
N 7 BPB M 1 1326 1326 BPB BPB . 
O 8 FE2 M 1 1327 1327 FE2 FE2 . 
P 9 MQ7 M 1 1328 1328 MQ7 MQ7 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . H 5 39.4 37.701 77.187 1 17.78 ? FE HEC 1336 C 1 
HETATM 2 C CHA HEC . . . H 5 38.535 34.384 77.757 1 18.84 ? CHA HEC 1336 C 1 
HETATM 3 C CHB HEC . . . H 5 37.438 37.688 74.369 1 18.24 ? CHB HEC 1336 C 1 
HETATM 4 C CHC HEC . . . H 5 39.925 41.089 76.784 1 17.76 ? CHC HEC 1336 C 1 
HETATM 5 C CHD HEC . . . H 5 41.388 37.73 79.969 1 18.33 ? CHD HEC 1336 C 1 
HETATM 6 N NA HEC . . . H 5 38.203 36.276 76.234 1 18.65 ? NA HEC 1336 C 1 
HETATM 7 C C1A HEC . . . H 5 37.972 34.973 76.642 1 18.99 ? C1A HEC 1336 C 1 
HETATM 8 C C2A HEC . . . H 5 37.054 34.359 75.688 1 19.21 ? C2A HEC 1336 C 1 
HETATM 9 C C3A HEC . . . H 5 36.757 35.281 74.759 1 19 ? C3A HEC 1336 C 1 
HETATM 10 C C4A HEC . . . H 5 37.472 36.505 75.082 1 18.52 ? C4A HEC 1336 C 1 
HETATM 11 C CMA HEC . . . H 5 35.818 35.089 73.543 1 18.88 ? CMA HEC 1336 C 1 
HETATM 12 C CAA HEC . . . H 5 36.5 32.908 75.741 1 19.58 ? CAA HEC 1336 C 1 
HETATM 13 C CBA HEC . . . H 5 37.522 31.906 75.209 1 20.64 ? CBA HEC 1336 C 1 
HETATM 14 C CGA HEC . . . H 5 36.95 30.514 75.046 1 21.09 ? CGA HEC 1336 C 1 
HETATM 15 O O1A HEC . . . H 5 35.808 30.25 75.505 1 21.18 ? O1A HEC 1336 C 1 
HETATM 16 O O2A HEC . . . H 5 37.65 29.652 74.446 1 21.34 ? O2A HEC 1336 C 1 
HETATM 17 N NB HEC . . . H 5 38.801 39.141 75.825 1 17.89 ? NB HEC 1336 C 1 
HETATM 18 C C1B HEC . . . H 5 37.975 38.912 74.738 1 18.01 ? C1B HEC 1336 C 1 
HETATM 19 C C2B HEC . . . H 5 37.783 40.179 74.053 1 17.43 ? C2B HEC 1336 C 1 
HETATM 20 C C3B HEC . . . H 5 38.468 41.119 74.718 1 17.4 ? C3B HEC 1336 C 1 
HETATM 21 C C4B HEC . . . H 5 39.121 40.481 75.846 1 17.43 ? C4B HEC 1336 C 1 
HETATM 22 C CMB HEC . . . H 5 36.927 40.381 72.782 1 16.8 ? CMB HEC 1336 C 1 
HETATM 23 C CAB HEC . . . H 5 38.555 42.624 74.366 1 17.7 ? CAB HEC 1336 C 1 
HETATM 24 C CBB HEC . . . H 5 37.476 43.414 74.407 1 16.82 ? CBB HEC 1336 C 1 
HETATM 25 N NC HEC . . . H 5 40.407 39.172 78.248 1 18.05 ? NC HEC 1336 C 1 
HETATM 26 C C1C HEC . . . H 5 40.623 40.463 77.801 1 17.89 ? C1C HEC 1336 C 1 
HETATM 27 C C2C HEC . . . H 5 41.705 41.035 78.589 1 17.69 ? C2C HEC 1336 C 1 
HETATM 28 C C3C HEC . . . H 5 42.108 40.11 79.472 1 17.91 ? C3C HEC 1336 C 1 
HETATM 29 C C4C HEC . . . H 5 41.299 38.917 79.27 1 18.02 ? C4C HEC 1336 C 1 
HETATM 30 C CMC HEC . . . H 5 42.279 42.466 78.429 1 17.39 ? CMC HEC 1336 C 1 
HETATM 31 C CAC HEC . . . H 5 43.251 40.267 80.515 1 18.29 ? CAC HEC 1336 C 1 
HETATM 32 C CBC HEC . . . H 5 43.111 40.997 81.63 1 18.02 ? CBC HEC 1336 C 1 
HETATM 33 N ND HEC . . . H 5 39.858 36.275 78.654 1 18.57 ? ND HEC 1336 C 1 
HETATM 34 C C1D HEC . . . H 5 40.776 36.521 79.681 1 18.74 ? C1D HEC 1336 C 1 
HETATM 35 C C2D HEC . . . H 5 40.991 35.285 80.41 1 19.09 ? C2D HEC 1336 C 1 
HETATM 36 C C3D HEC . . . H 5 40.103 34.241 79.724 1 19.41 ? C3D HEC 1336 C 1 
HETATM 37 C C4D HEC . . . H 5 39.437 34.943 78.642 1 18.88 ? C4D HEC 1336 C 1 
HETATM 38 C CMD HEC . . . H 5 41.919 35.043 81.623 1 18.82 ? CMD HEC 1336 C 1 
HETATM 39 C CAD HEC . . . H 5 39.997 32.752 80.121 1 20.31 ? CAD HEC 1336 C 1 
HETATM 40 C CBD HEC . . . H 5 38.66 32.423 80.772 1 21.65 ? CBD HEC 1336 C 1 
HETATM 41 C CGD HEC . . . H 5 38.232 31.047 80.318 1 22.2 ? CGD HEC 1336 C 1 
HETATM 42 O O1D HEC . . . H 5 37.069 30.918 79.841 1 22.63 ? O1D HEC 1336 C 1 
HETATM 43 O O2D HEC . . . H 5 39.049 30.089 80.425 1 21.73 ? O2D HEC 1336 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#