data_2X60 # _model_server_result.job_id '_MXkGFZ4lvOkuNVifxaPpQ' _model_server_result.datetime_utc '2024-11-28 02:43:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x60 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 2X60 # _exptl.entry_id 2X60 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.75 _cell.angle_gamma 90 _cell.entry_id 2X60 _cell.length_a 65.926 _cell.length_b 79.567 _cell.length_c 70.952 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2G GTP . A GTP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc2 C O2B GTP . A GTP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 C O1A GTP . A GTP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc4 E O1B GTP . B GTP 601 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc5 E O2A GTP . B GTP 601 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc6 E O3G GTP . B GTP 601 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 2X60 _atom_sites.fract_transf_matrix[1][1] 0.015169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004855 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP A 1 601 601 GTP GTP . D 3 MG A 1 602 602 MG MG . E 2 GTP B 1 601 601 GTP GTP . F 3 MG B 1 602 602 MG MG . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 2 38.864 -21.661 -51.277 1 55.81 ? PG GTP 601 B 1 HETATM 2 O O1G GTP . . . E 2 37.626 -21.322 -52.083 1 57.86 ? O1G GTP 601 B 1 HETATM 3 O O2G GTP . . . E 2 38.395 -21.915 -49.858 1 55.78 ? O2G GTP 601 B 1 HETATM 4 O O3G GTP . . . E 2 39.648 -22.842 -51.828 1 53.46 ? O3G GTP 601 B 1 HETATM 5 O O3B GTP . . . E 2 39.791 -20.333 -51.357 1 57.37 ? O3B GTP 601 B 1 HETATM 6 P PB GTP . . . E 2 41.326 -20.341 -51.893 1 57.05 ? PB GTP 601 B 1 HETATM 7 O O1B GTP . . . E 2 41.375 -21.15 -53.168 1 54.69 ? O1B GTP 601 B 1 HETATM 8 O O2B GTP . . . E 2 41.749 -18.882 -52.008 1 55.33 ? O2B GTP 601 B 1 HETATM 9 O O3A GTP . . . E 2 42.135 -21.07 -50.702 1 56.54 ? O3A GTP 601 B 1 HETATM 10 P PA GTP . . . E 2 43.176 -22.217 -51.039 1 56.6 ? PA GTP 601 B 1 HETATM 11 O O1A GTP . . . E 2 43.662 -22.876 -49.778 1 58.18 ? O1A GTP 601 B 1 HETATM 12 O O2A GTP . . . E 2 42.58 -23.22 -51.993 1 60.26 ? O2A GTP 601 B 1 HETATM 13 O O5' GTP . . . E 2 44.33 -21.383 -51.757 1 59.44 ? O5' GTP 601 B 1 HETATM 14 C C5' GTP . . . E 2 45.581 -21.896 -52.179 1 60.95 ? C5' GTP 601 B 1 HETATM 15 C C4' GTP . . . E 2 46.434 -20.695 -52.583 1 62.41 ? C4' GTP 601 B 1 HETATM 16 O O4' GTP . . . E 2 46.418 -20.597 -53.993 1 64.54 ? O4' GTP 601 B 1 HETATM 17 C C3' GTP . . . E 2 45.895 -19.369 -52.024 1 63.37 ? C3' GTP 601 B 1 HETATM 18 O O3' GTP . . . E 2 46.9 -18.459 -51.601 1 62.38 ? O3' GTP 601 B 1 HETATM 19 C C2' GTP . . . E 2 45.088 -18.818 -53.177 1 64.39 ? C2' GTP 601 B 1 HETATM 20 O O2' GTP . . . E 2 45.102 -17.415 -53.162 1 63.73 ? O2' GTP 601 B 1 HETATM 21 C C1' GTP . . . E 2 45.723 -19.438 -54.423 1 66.87 ? C1' GTP 601 B 1 HETATM 22 N N9 GTP . . . E 2 44.733 -19.813 -55.469 1 70.52 ? N9 GTP 601 B 1 HETATM 23 C C8 GTP . . . E 2 43.643 -20.637 -55.333 1 71.09 ? C8 GTP 601 B 1 HETATM 24 N N7 GTP . . . E 2 43.004 -20.717 -56.525 1 71.87 ? N7 GTP 601 B 1 HETATM 25 C C5 GTP . . . E 2 43.674 -19.97 -57.431 1 73.84 ? C5 GTP 601 B 1 HETATM 26 C C6 GTP . . . E 2 43.471 -19.7 -58.789 1 74.68 ? C6 GTP 601 B 1 HETATM 27 O O6 GTP . . . E 2 42.52 -20.175 -59.408 1 75.92 ? O6 GTP 601 B 1 HETATM 28 N N1 GTP . . . E 2 44.35 -18.88 -59.458 1 74.93 ? N1 GTP 601 B 1 HETATM 29 C C2 GTP . . . E 2 45.425 -18.325 -58.788 1 75.55 ? C2 GTP 601 B 1 HETATM 30 N N2 GTP . . . E 2 46.279 -17.523 -59.429 1 76.6 ? N2 GTP 601 B 1 HETATM 31 N N3 GTP . . . E 2 45.618 -18.595 -57.445 1 74.78 ? N3 GTP 601 B 1 HETATM 32 C C4 GTP . . . E 2 44.763 -19.402 -56.775 1 73.19 ? C4 GTP 601 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #