data_2X6D
#
_model_server_result.job_id            QhYgAwN2TAcbDxfC8OfhCQ 
_model_server_result.datetime_utc      '2024-10-10 01:17:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2x6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1391}' 
#
_entry.id    2X6D 
#
_exptl.entry_id    2X6D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              581.934 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-BROMO-7-[4-(4-CHLOROBENZYL)PIPERAZIN-1-YL]-2-[4-(MORPHOLIN-4-YLMETHYL)PHENYL]-3H-IMIDAZO[4,5-B]PYRIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2X6D 
_cell.length_a            81.569 
_cell.length_b            81.569 
_cell.length_c            171.992 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2X6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H30 Br Cl N6 O' 
_chem_comp.formula_weight    581.934 
_chem_comp.id                X6D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-BROMO-7-[4-(4-CHLOROBENZYL)PIPERAZIN-1-YL]-2-[4-(MORPHOLIN-4-YLMETHYL)PHENYL]-3H-IMIDAZO[4,5-B]PYRIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CTT137444 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAN CAL X6D sing 380 n n 
CAN NBI X6D sing 381 n n 
CAL OAY X6D sing 382 n n 
OAY CAM X6D sing 383 n n 
CAM CAO X6D sing 384 n n 
CAO NBI X6D sing 385 n n 
NBI CAT X6D sing 386 n n 
CAT CBB X6D sing 387 n n 
CBB CAG X6D sing 388 n y 
CBB CAH X6D doub 389 n y 
CAG CAI X6D doub 390 n y 
CAI CBD X6D sing 391 n y 
CAH CAJ X6D sing 392 n y 
CAJ CBD X6D doub 393 n y 
CBD CBE X6D sing 394 n y 
CBE NAX X6D sing 395 n y 
CBE NAW X6D doub 396 n y 
NAX CBG X6D sing 397 n y 
NAW CBH X6D sing 398 n y 
CBH CBG X6D sing 399 n y 
CBH CBF X6D doub 400 n y 
CBG NAV X6D doub 401 n y 
NAV CAK X6D sing 402 n y 
CAK CBC X6D doub 403 n y 
CBC BR X6D sing 404 n n 
CBC CBF X6D sing 405 n y 
CBF NBK X6D sing 406 n n 
NBK CAR X6D sing 407 n n 
NBK CAS X6D sing 408 n n 
CAR CAP X6D sing 409 n n 
CAP NBJ X6D sing 410 n n 
CAS CAQ X6D sing 411 n n 
CAQ NBJ X6D sing 412 n n 
NBJ CAU X6D sing 413 n n 
CAU CBA X6D sing 414 n n 
CBA CAE X6D sing 415 n y 
CBA CAF X6D doub 416 n y 
CAE CAC X6D doub 417 n y 
CAC CAZ X6D sing 418 n y 
CAZ CL X6D sing 419 n n 
CAZ CAD X6D doub 420 n y 
CAD CAF X6D sing 421 n y 
CAN HAN1 X6D sing 422 n n 
CAN HAN2 X6D sing 423 n n 
CAL HAL1 X6D sing 424 n n 
CAL HAL2 X6D sing 425 n n 
CAM HAM1 X6D sing 426 n n 
CAM HAM2 X6D sing 427 n n 
CAO HAO1 X6D sing 428 n n 
CAO HAO2 X6D sing 429 n n 
CAT HAT1 X6D sing 430 n n 
CAT HAT2 X6D sing 431 n n 
CAG HAG X6D sing 432 n n 
CAH HAH X6D sing 433 n n 
CAI HAI X6D sing 434 n n 
CAJ HAJ X6D sing 435 n n 
NAX HAX X6D sing 436 n n 
CAK HAK X6D sing 437 n n 
CAR HAR1 X6D sing 438 n n 
CAR HAR2 X6D sing 439 n n 
CAS HAS1 X6D sing 440 n n 
CAS HAS2 X6D sing 441 n n 
CAP HAP1 X6D sing 442 n n 
CAP HAP2 X6D sing 443 n n 
CAQ HAQ1 X6D sing 444 n n 
CAQ HAQ2 X6D sing 445 n n 
CAU HAU1 X6D sing 446 n n 
CAU HAU2 X6D sing 447 n n 
CAE HAE X6D sing 448 n n 
CAF HAF X6D sing 449 n n 
CAC HAC X6D sing 450 n n 
CAD HAD X6D sing 451 n n 
#
_atom_sites.entry_id                     2X6D 
_atom_sites.fract_transf_matrix[1][1]    0.01226 
_atom_sites.fract_transf_matrix[1][2]    0.007078 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014156 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005814 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1389 1389 SO4 SO4 . 
C 2 SO4 A 1 1390 1390 SO4 SO4 . 
D 3 X6D A 1 1391 1391 X6D X6D . 
E 4 HOH A 1 2001 2001 HOH HOH . 
E 4 HOH A 2 2002 2002 HOH HOH . 
E 4 HOH A 3 2003 2003 HOH HOH . 
E 4 HOH A 4 2004 2004 HOH HOH . 
E 4 HOH A 5 2005 2005 HOH HOH . 
E 4 HOH A 6 2006 2006 HOH HOH . 
E 4 HOH A 7 2007 2007 HOH HOH . 
E 4 HOH A 8 2008 2008 HOH HOH . 
E 4 HOH A 9 2009 2009 HOH HOH . 
E 4 HOH A 10 2010 2010 HOH HOH . 
E 4 HOH A 11 2011 2011 HOH HOH . 
E 4 HOH A 12 2012 2012 HOH HOH . 
E 4 HOH A 13 2013 2013 HOH HOH . 
E 4 HOH A 14 2014 2014 HOH HOH . 
E 4 HOH A 15 2015 2015 HOH HOH . 
E 4 HOH A 16 2016 2016 HOH HOH . 
E 4 HOH A 17 2017 2017 HOH HOH . 
E 4 HOH A 18 2018 2018 HOH HOH . 
E 4 HOH A 19 2019 2019 HOH HOH . 
E 4 HOH A 20 2020 2020 HOH HOH . 
E 4 HOH A 21 2021 2021 HOH HOH . 
E 4 HOH A 22 2022 2022 HOH HOH . 
E 4 HOH A 23 2023 2023 HOH HOH . 
E 4 HOH A 24 2024 2024 HOH HOH . 
E 4 HOH A 25 2025 2025 HOH HOH . 
E 4 HOH A 26 2026 2026 HOH HOH . 
E 4 HOH A 27 2027 2027 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAN X6D . . . D 3 0.634 37.52 83.674 1 62.6 ? CAN X6D 1391 A 1 
HETATM 2 C CAL X6D . . . D 3 0.07 38.879 83.981 1 64.12 ? CAL X6D 1391 A 1 
HETATM 3 O OAY X6D . . . D 3 0.772 39.398 85.158 1 59.75 ? OAY X6D 1391 A 1 
HETATM 4 C CAM X6D . . . D 3 0.594 38.571 86.301 1 67.06 ? CAM X6D 1391 A 1 
HETATM 5 C CAO X6D . . . D 3 1.148 37.195 85.977 1 84.94 ? CAO X6D 1391 A 1 
HETATM 6 N NBI X6D . . . D 3 0.423 36.641 84.832 1 74.28 ? NBI X6D 1391 A 1 
HETATM 7 C CAT X6D . . . D 3 0.983 35.324 84.54 1 68.09 ? CAT X6D 1391 A 1 
HETATM 8 C CBB X6D . . . D 3 0.344 34.634 83.345 1 56.41 ? CBB X6D 1391 A 1 
HETATM 9 C CAG X6D . . . D 3 -0.549 33.641 83.642 1 59.01 ? CAG X6D 1391 A 1 
HETATM 10 C CAI X6D . . . D 3 -1.163 32.966 82.613 1 55.36 ? CAI X6D 1391 A 1 
HETATM 11 C CAH X6D . . . D 3 0.657 34.942 82.025 1 53.49 ? CAH X6D 1391 A 1 
HETATM 12 C CAJ X6D . . . D 3 0.048 34.26 80.996 1 48 ? CAJ X6D 1391 A 1 
HETATM 13 C CBD X6D . . . D 3 -0.905 33.31 81.301 1 55.37 ? CBD X6D 1391 A 1 
HETATM 14 C CBE X6D . . . D 3 -1.488 32.515 80.321 1 53.65 ? CBE X6D 1391 A 1 
HETATM 15 N NAX X6D . . . D 3 -1.403 32.624 79.003 1 46.62 ? NAX X6D 1391 A 1 
HETATM 16 N NAW X6D . . . D 3 -2.195 31.421 80.581 1 53.34 ? NAW X6D 1391 A 1 
HETATM 17 C CBH X6D . . . D 3 -2.56 30.825 79.465 1 50.93 ? CBH X6D 1391 A 1 
HETATM 18 C CBG X6D . . . D 3 -2.068 31.628 78.439 1 48.69 ? CBG X6D 1391 A 1 
HETATM 19 N NAV X6D . . . D 3 -2.281 31.331 77.149 1 44.26 ? NAV X6D 1391 A 1 
HETATM 20 C CAK X6D . . . D 3 -2.977 30.245 76.841 1 51.47 ? CAK X6D 1391 A 1 
HETATM 21 C CBC X6D . . . D 3 -3.539 29.399 77.814 1 55.74 ? CBC X6D 1391 A 1 
HETATM 22 BR BR X6D . . . D 3 -4.455 27.896 77.12 1 74.67 ? BR X6D 1391 A 1 
HETATM 23 C CBF X6D . . . D 3 -3.324 29.682 79.168 1 53.46 ? CBF X6D 1391 A 1 
HETATM 24 N NBK X6D . . . D 3 -3.865 28.93 80.291 1 61.72 ? NBK X6D 1391 A 1 
HETATM 25 C CAR X6D . . . D 3 -5.205 28.761 80.421 1 53.09 ? CAR X6D 1391 A 1 
HETATM 26 C CAP X6D . . . D 3 -5.84 27.663 81.261 1 63.91 ? CAP X6D 1391 A 1 
HETATM 27 C CAS X6D . . . D 3 -3.58 29.263 81.737 1 65.52 ? CAS X6D 1391 A 1 
HETATM 28 C CAQ X6D . . . D 3 -4.87 29.178 82.726 1 69.18 ? CAQ X6D 1391 A 1 
HETATM 29 N NBJ X6D . . . D 3 -5.344 27.784 82.675 1 72.47 ? NBJ X6D 1391 A 1 
HETATM 30 C CAU X6D . . . D 3 -6.309 26.768 83.174 1 79.9 ? CAU X6D 1391 A 1 
HETATM 31 C CBA X6D . . . D 3 -6.059 25.309 82.782 1 88.9 ? CBA X6D 1391 A 1 
HETATM 32 C CAE X6D . . . D 3 -6.886 24.631 81.846 1 66.78 ? CAE X6D 1391 A 1 
HETATM 33 C CAC X6D . . . D 3 -6.584 23.304 81.567 1 61.8 ? CAC X6D 1391 A 1 
HETATM 34 C CAZ X6D . . . D 3 -5.534 22.648 82.212 1 68.21 ? CAZ X6D 1391 A 1 
HETATM 35 CL CL X6D . . . D 3 -5.197 21.015 81.81 1 75.97 ? CL X6D 1391 A 1 
HETATM 36 C CAD X6D . . . D 3 -4.745 23.321 83.142 1 69.53 ? CAD X6D 1391 A 1 
HETATM 37 C CAF X6D . . . D 3 -5.012 24.655 83.438 1 73.45 ? CAF X6D 1391 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           37 
#