data_2X6L
#
_model_server_result.job_id            76_usI3LKfvV1iRtxGJN8A 
_model_server_result.datetime_utc      '2024-11-23 07:04:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2x6l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1070}' 
#
_entry.id    2X6L 
#
_exptl.entry_id    2X6L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2X6L 
_cell.length_a            59.811 
_cell.length_b            87.892 
_cell.length_c            186.61 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2X6L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA decameric 10 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1,2 
C,E,G,K,M 2 1 
B,D,F,H,J,L 3 1 
A,I 4 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf2 A SG CYS 12 A CYS 12 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 B SG CYS 11 B CYS 11 1_555 B SG CYS 35 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 12 B CYS 12 1_555 B SG CYS 51 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 C SG CYS 11 C CYS 11 1_555 C SG CYS 35 C CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 C SG CYS 12 C CYS 12 1_555 C SG CYS 51 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 D SG CYS 11 D CYS 11 1_555 D SG CYS 35 D CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf8 D SG CYS 12 D CYS 12 1_555 D SG CYS 51 D CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf9 E SG CYS 11 E CYS 11 1_555 E SG CYS 35 E CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf10 E SG CYS 12 E CYS 12 1_555 E SG CYS 51 E CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2X6L 
_atom_sites.fract_transf_matrix[1][1]    0.016719 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011378 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005359 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 GOL B 1 1070 1070 GOL GOL . 
G 2 GOL C 1 1070 1070 GOL GOL . 
H 2 GOL D 1 1070 1070 GOL GOL . 
I 3 HOH A 1 2001 2001 HOH HOH . 
I 3 HOH A 2 2002 2002 HOH HOH . 
I 3 HOH A 3 2003 2003 HOH HOH . 
I 3 HOH A 4 2004 2004 HOH HOH . 
I 3 HOH A 5 2005 2005 HOH HOH . 
I 3 HOH A 6 2006 2006 HOH HOH . 
I 3 HOH A 7 2007 2007 HOH HOH . 
I 3 HOH A 8 2008 2008 HOH HOH . 
I 3 HOH A 9 2009 2009 HOH HOH . 
I 3 HOH A 10 2010 2010 HOH HOH . 
I 3 HOH A 11 2011 2011 HOH HOH . 
I 3 HOH A 12 2012 2012 HOH HOH . 
I 3 HOH A 13 2013 2013 HOH HOH . 
I 3 HOH A 14 2014 2014 HOH HOH . 
I 3 HOH A 15 2015 2015 HOH HOH . 
I 3 HOH A 16 2016 2016 HOH HOH . 
I 3 HOH A 17 2017 2017 HOH HOH . 
I 3 HOH A 18 2018 2018 HOH HOH . 
I 3 HOH A 19 2019 2019 HOH HOH . 
I 3 HOH A 20 2020 2020 HOH HOH . 
I 3 HOH A 21 2021 2021 HOH HOH . 
I 3 HOH A 22 2022 2022 HOH HOH . 
I 3 HOH A 23 2023 2023 HOH HOH . 
I 3 HOH A 24 2024 2024 HOH HOH . 
I 3 HOH A 25 2025 2025 HOH HOH . 
I 3 HOH A 26 2026 2026 HOH HOH . 
I 3 HOH A 27 2027 2027 HOH HOH . 
I 3 HOH A 28 2028 2028 HOH HOH . 
I 3 HOH A 29 2029 2029 HOH HOH . 
I 3 HOH A 30 2030 2030 HOH HOH . 
I 3 HOH A 31 2031 2031 HOH HOH . 
I 3 HOH A 32 2032 2032 HOH HOH . 
I 3 HOH A 33 2033 2033 HOH HOH . 
I 3 HOH A 34 2034 2034 HOH HOH . 
J 3 HOH B 1 2001 2001 HOH HOH . 
J 3 HOH B 2 2002 2002 HOH HOH . 
J 3 HOH B 3 2003 2003 HOH HOH . 
J 3 HOH B 4 2004 2004 HOH HOH . 
J 3 HOH B 5 2005 2005 HOH HOH . 
J 3 HOH B 6 2006 2006 HOH HOH . 
J 3 HOH B 7 2007 2007 HOH HOH . 
J 3 HOH B 8 2008 2008 HOH HOH . 
J 3 HOH B 9 2009 2009 HOH HOH . 
J 3 HOH B 10 2010 2010 HOH HOH . 
J 3 HOH B 11 2011 2011 HOH HOH . 
J 3 HOH B 12 2012 2012 HOH HOH . 
J 3 HOH B 13 2013 2013 HOH HOH . 
J 3 HOH B 14 2014 2014 HOH HOH . 
J 3 HOH B 15 2015 2015 HOH HOH . 
J 3 HOH B 16 2016 2016 HOH HOH . 
J 3 HOH B 17 2017 2017 HOH HOH . 
J 3 HOH B 18 2018 2018 HOH HOH . 
J 3 HOH B 19 2019 2019 HOH HOH . 
J 3 HOH B 20 2020 2020 HOH HOH . 
J 3 HOH B 21 2021 2021 HOH HOH . 
J 3 HOH B 22 2022 2022 HOH HOH . 
J 3 HOH B 23 2023 2023 HOH HOH . 
J 3 HOH B 24 2024 2024 HOH HOH . 
J 3 HOH B 25 2025 2025 HOH HOH . 
J 3 HOH B 26 2026 2026 HOH HOH . 
J 3 HOH B 27 2027 2027 HOH HOH . 
J 3 HOH B 28 2028 2028 HOH HOH . 
J 3 HOH B 29 2029 2029 HOH HOH . 
J 3 HOH B 30 2030 2030 HOH HOH . 
J 3 HOH B 31 2031 2031 HOH HOH . 
K 3 HOH C 1 2001 2001 HOH HOH . 
K 3 HOH C 2 2002 2002 HOH HOH . 
K 3 HOH C 3 2003 2003 HOH HOH . 
K 3 HOH C 4 2004 2004 HOH HOH . 
K 3 HOH C 5 2005 2005 HOH HOH . 
K 3 HOH C 6 2006 2006 HOH HOH . 
K 3 HOH C 7 2007 2007 HOH HOH . 
K 3 HOH C 8 2008 2008 HOH HOH . 
K 3 HOH C 9 2009 2009 HOH HOH . 
K 3 HOH C 10 2010 2010 HOH HOH . 
K 3 HOH C 11 2011 2011 HOH HOH . 
K 3 HOH C 12 2012 2012 HOH HOH . 
K 3 HOH C 13 2013 2013 HOH HOH . 
K 3 HOH C 14 2014 2014 HOH HOH . 
K 3 HOH C 15 2015 2015 HOH HOH . 
K 3 HOH C 16 2016 2016 HOH HOH . 
K 3 HOH C 17 2017 2017 HOH HOH . 
K 3 HOH C 18 2018 2018 HOH HOH . 
K 3 HOH C 19 2019 2019 HOH HOH . 
K 3 HOH C 20 2020 2020 HOH HOH . 
K 3 HOH C 21 2021 2021 HOH HOH . 
K 3 HOH C 22 2022 2022 HOH HOH . 
K 3 HOH C 23 2023 2023 HOH HOH . 
K 3 HOH C 24 2024 2024 HOH HOH . 
K 3 HOH C 25 2025 2025 HOH HOH . 
K 3 HOH C 26 2026 2026 HOH HOH . 
K 3 HOH C 27 2027 2027 HOH HOH . 
K 3 HOH C 28 2028 2028 HOH HOH . 
K 3 HOH C 29 2029 2029 HOH HOH . 
K 3 HOH C 30 2030 2030 HOH HOH . 
K 3 HOH C 31 2031 2031 HOH HOH . 
K 3 HOH C 32 2032 2032 HOH HOH . 
L 3 HOH D 1 2001 2001 HOH HOH . 
L 3 HOH D 2 2002 2002 HOH HOH . 
L 3 HOH D 3 2003 2003 HOH HOH . 
L 3 HOH D 4 2004 2004 HOH HOH . 
L 3 HOH D 5 2005 2005 HOH HOH . 
L 3 HOH D 6 2006 2006 HOH HOH . 
L 3 HOH D 7 2007 2007 HOH HOH . 
L 3 HOH D 8 2008 2008 HOH HOH . 
L 3 HOH D 9 2009 2009 HOH HOH . 
L 3 HOH D 10 2010 2010 HOH HOH . 
L 3 HOH D 11 2011 2011 HOH HOH . 
L 3 HOH D 12 2012 2012 HOH HOH . 
L 3 HOH D 13 2013 2013 HOH HOH . 
L 3 HOH D 14 2014 2014 HOH HOH . 
L 3 HOH D 15 2015 2015 HOH HOH . 
L 3 HOH D 16 2016 2016 HOH HOH . 
L 3 HOH D 17 2017 2017 HOH HOH . 
L 3 HOH D 18 2018 2018 HOH HOH . 
L 3 HOH D 19 2019 2019 HOH HOH . 
L 3 HOH D 20 2020 2020 HOH HOH . 
L 3 HOH D 21 2021 2021 HOH HOH . 
L 3 HOH D 22 2022 2022 HOH HOH . 
L 3 HOH D 23 2023 2023 HOH HOH . 
M 3 HOH E 1 2001 2001 HOH HOH . 
M 3 HOH E 2 2002 2002 HOH HOH . 
M 3 HOH E 3 2003 2003 HOH HOH . 
M 3 HOH E 4 2004 2004 HOH HOH . 
M 3 HOH E 5 2005 2005 HOH HOH . 
M 3 HOH E 6 2006 2006 HOH HOH . 
M 3 HOH E 7 2007 2007 HOH HOH . 
M 3 HOH E 8 2008 2008 HOH HOH . 
M 3 HOH E 9 2009 2009 HOH HOH . 
M 3 HOH E 10 2010 2010 HOH HOH . 
M 3 HOH E 11 2011 2011 HOH HOH . 
M 3 HOH E 12 2012 2012 HOH HOH . 
M 3 HOH E 13 2013 2013 HOH HOH . 
M 3 HOH E 14 2014 2014 HOH HOH . 
M 3 HOH E 15 2015 2015 HOH HOH . 
M 3 HOH E 16 2016 2016 HOH HOH . 
M 3 HOH E 17 2017 2017 HOH HOH . 
M 3 HOH E 18 2018 2018 HOH HOH . 
M 3 HOH E 19 2019 2019 HOH HOH . 
M 3 HOH E 20 2020 2020 HOH HOH . 
M 3 HOH E 21 2021 2021 HOH HOH . 
M 3 HOH E 22 2022 2022 HOH HOH . 
M 3 HOH E 23 2023 2023 HOH HOH . 
M 3 HOH E 24 2024 2024 HOH HOH . 
M 3 HOH E 25 2025 2025 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 2 -8.704 -8.884 -33.223 1 34.14 ? C1 GOL 1070 B 1 
HETATM 2 O O1 GOL . . . F 2 -9.173 -10.008 -32.572 1 36.53 ? O1 GOL 1070 B 1 
HETATM 3 C C2 GOL . . . F 2 -7.207 -8.831 -33.105 1 47.16 ? C2 GOL 1070 B 1 
HETATM 4 O O2 GOL . . . F 2 -6.673 -7.747 -33.794 1 37.98 ? O2 GOL 1070 B 1 
HETATM 5 C C3 GOL . . . F 2 -6.584 -10.156 -33.487 1 41.14 ? C3 GOL 1070 B 1 
HETATM 6 O O3 GOL . . . F 2 -5.393 -10.335 -32.781 1 35.89 ? O3 GOL 1070 B 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#