data_2X72
#
_model_server_result.job_id            aWlqr0HscmX8J7Ps1HL31A 
_model_server_result.datetime_utc      '2024-11-23 03:11:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2x72 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":402}' 
#
_entry.id    2X72 
#
_exptl.entry_id    2X72 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2X72 
_cell.length_a            243.986 
_cell.length_b            243.986 
_cell.length_c            109.156 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2X72 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 109.156 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 C 1 NAG A 1333 NAG 
3 n C NAG 2 C 2 NAG A 1334 NAG 
3 n C BMA 3 C 3 BMA A 1335 BMA 
3 n C MAN 4 C 4 MAN A 1336 MAN 
3 n C MAN 5 C 5 MAN A 1337 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale3 A SG CYS 323 A CYS 322 1_555 G C1 PLM . A PLM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.674 ? 
covale ? covale4 A SG CYS 324 A CYS 323 1_555 F C1 PLM . A PLM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? 
covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 106 n n 
C1 C2 BOG sing 107 n n 
C1 O5 BOG sing 108 n n 
C1 H1 BOG sing 109 n n 
O1 C1' BOG sing 110 n n 
C2 O2 BOG sing 111 n n 
C2 C3 BOG sing 112 n n 
C2 H2 BOG sing 113 n n 
O2 HO2 BOG sing 114 n n 
C3 O3 BOG sing 115 n n 
C3 C4 BOG sing 116 n n 
C3 H3 BOG sing 117 n n 
O3 HO3 BOG sing 118 n n 
C4 O4 BOG sing 119 n n 
C4 C5 BOG sing 120 n n 
C4 H4 BOG sing 121 n n 
O4 HO4 BOG sing 122 n n 
C5 O5 BOG sing 123 n n 
C5 C6 BOG sing 124 n n 
C5 H5 BOG sing 125 n n 
C6 O6 BOG sing 126 n n 
C6 H61 BOG sing 127 n n 
C6 H62 BOG sing 128 n n 
O6 HO6 BOG sing 129 n n 
C1' C2' BOG sing 130 n n 
C1' "H1'1" BOG sing 131 n n 
C1' "H1'2" BOG sing 132 n n 
C2' C3' BOG sing 133 n n 
C2' "H2'1" BOG sing 134 n n 
C2' "H2'2" BOG sing 135 n n 
C3' C4' BOG sing 136 n n 
C3' "H3'1" BOG sing 137 n n 
C3' "H3'2" BOG sing 138 n n 
C4' C5' BOG sing 139 n n 
C4' "H4'1" BOG sing 140 n n 
C4' "H4'2" BOG sing 141 n n 
C5' C6' BOG sing 142 n n 
C5' "H5'1" BOG sing 143 n n 
C5' "H5'2" BOG sing 144 n n 
C6' C7' BOG sing 145 n n 
C6' "H6'1" BOG sing 146 n n 
C6' "H6'2" BOG sing 147 n n 
C7' C8' BOG sing 148 n n 
C7' "H7'1" BOG sing 149 n n 
C7' "H7'2" BOG sing 150 n n 
C8' "H8'1" BOG sing 151 n n 
C8' "H8'2" BOG sing 152 n n 
C8' "H8'3" BOG sing 153 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     2X72 
_atom_sites.fract_transf_matrix[1][1]    0.004099 
_atom_sites.fract_transf_matrix[1][2]    0.002366 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004733 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 PEF A 1 401 1329 PEF PEF . 
E 5 BOG A 1 402 1330 BOG BOG . 
F 6 PLM A 1 403 1331 PLM PLM . 
G 6 PLM A 1 404 1332 PLM PLM . 
H 7 RET A 1 410 1338 RET RET . 
I 8 LPP A 1 411 1340 LPP LPP . 
J 9 ACT A 1 412 1351 ACT ACT . 
K 10 HOH A 1 501 2014 HOH HOH . 
K 10 HOH A 2 502 2011 HOH HOH . 
K 10 HOH A 3 503 2009 HOH HOH . 
K 10 HOH A 4 504 2018 HOH HOH . 
K 10 HOH A 5 505 2007 HOH HOH . 
K 10 HOH A 6 506 2013 HOH HOH . 
K 10 HOH A 7 507 2003 HOH HOH . 
K 10 HOH A 8 508 2004 HOH HOH . 
K 10 HOH A 9 509 2001 HOH HOH . 
K 10 HOH A 10 510 2002 HOH HOH . 
K 10 HOH A 11 511 2010 HOH HOH . 
K 10 HOH A 12 512 2016 HOH HOH . 
K 10 HOH A 13 513 2012 HOH HOH . 
K 10 HOH A 14 514 2006 HOH HOH . 
K 10 HOH A 15 515 2017 HOH HOH . 
K 10 HOH A 16 516 2015 HOH HOH . 
L 10 HOH B 1 401 2005 HOH HOH . 
L 10 HOH B 2 402 2008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . E 5 30.521 -4.43 46.755 1 119.97 ? C1 BOG 402 A 1 
HETATM 2 O O1 BOG . . . E 5 30.436 -4.932 45.413 1 116.16 ? O1 BOG 402 A 1 
HETATM 3 C C2 BOG . . . E 5 31.774 -3.544 46.94 1 130.44 ? C2 BOG 402 A 1 
HETATM 4 O O2 BOG . . . E 5 32.988 -4.292 46.681 1 129.36 ? O2 BOG 402 A 1 
HETATM 5 C C3 BOG . . . E 5 31.755 -2.955 48.35 1 137.03 ? C3 BOG 402 A 1 
HETATM 6 O O3 BOG . . . E 5 32.922 -2.112 48.562 1 134.91 ? O3 BOG 402 A 1 
HETATM 7 C C4 BOG . . . E 5 30.428 -2.177 48.55 1 129.21 ? C4 BOG 402 A 1 
HETATM 8 O O4 BOG . . . E 5 30.358 -1.583 49.857 1 126.26 ? O4 BOG 402 A 1 
HETATM 9 C C5 BOG . . . E 5 29.255 -3.145 48.36 1 124.41 ? C5 BOG 402 A 1 
HETATM 10 O O5 BOG . . . E 5 29.302 -3.707 47.028 1 119.47 ? O5 BOG 402 A 1 
HETATM 11 C C6 BOG . . . E 5 27.907 -2.446 48.605 1 119.72 ? C6 BOG 402 A 1 
HETATM 12 O O6 BOG . . . E 5 26.837 -3.395 48.461 1 112.47 ? O6 BOG 402 A 1 
HETATM 13 C C1' BOG . . . E 5 31.397 -5.882 44.944 1 105 ? C1' BOG 402 A 1 
HETATM 14 C C2' BOG . . . E 5 30.749 -6.446 43.683 1 92.27 ? C2' BOG 402 A 1 
HETATM 15 C C3' BOG . . . E 5 31.578 -7.522 43.035 1 83.18 ? C3' BOG 402 A 1 
HETATM 16 C C4' BOG . . . E 5 30.801 -7.954 41.817 1 80.37 ? C4' BOG 402 A 1 
HETATM 17 C C5' BOG . . . E 5 31.587 -9.033 41.108 1 81.37 ? C5' BOG 402 A 1 
HETATM 18 C C6' BOG . . . E 5 30.805 -9.42 39.861 1 80.18 ? C6' BOG 402 A 1 
HETATM 19 C C7' BOG . . . E 5 31.587 -10.481 39.108 1 78.82 ? C7' BOG 402 A 1 
HETATM 20 C C8' BOG . . . E 5 30.799 -10.827 37.856 1 81.36 ? C8' BOG 402 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#