data_2X72
#
_model_server_result.job_id            3D6i0TVg7YN1SzzvgFtiuQ 
_model_server_result.datetime_utc      '2024-11-26 18:03:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2x72 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":403}' 
#
_entry.id    2X72 
#
_exptl.entry_id    2X72 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.424 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALMITIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2X72 
_cell.length_a            243.986 
_cell.length_b            243.986 
_cell.length_c            109.156 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2X72 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 109.156 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 C 1 NAG A 1333 NAG 
3 n C NAG 2 C 2 NAG A 1334 NAG 
3 n C BMA 3 C 3 BMA A 1335 BMA 
3 n C MAN 4 C 4 MAN A 1336 MAN 
3 n C MAN 5 C 5 MAN A 1337 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale3 A SG CYS 323 A CYS 322 1_555 G C1 PLM . A PLM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.674 ? 
covale ? covale4 A SG CYS 324 A CYS 323 1_555 F C1 PLM . A PLM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? 
covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
#
_chem_comp.formula           'C16 H32 O2' 
_chem_comp.formula_weight    256.424 
_chem_comp.id                PLM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALMITIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PLM sing 630 n n 
C1 O2 PLM doub 631 n n 
C1 C2 PLM sing 632 n n 
O1 H PLM sing 633 n n 
C2 C3 PLM sing 634 n n 
C2 H21 PLM sing 635 n n 
C2 H22 PLM sing 636 n n 
C3 C4 PLM sing 637 n n 
C3 H31 PLM sing 638 n n 
C3 H32 PLM sing 639 n n 
C4 C5 PLM sing 640 n n 
C4 H41 PLM sing 641 n n 
C4 H42 PLM sing 642 n n 
C5 C6 PLM sing 643 n n 
C5 H51 PLM sing 644 n n 
C5 H52 PLM sing 645 n n 
C6 C7 PLM sing 646 n n 
C6 H61 PLM sing 647 n n 
C6 H62 PLM sing 648 n n 
C7 C8 PLM sing 649 n n 
C7 H71 PLM sing 650 n n 
C7 H72 PLM sing 651 n n 
C8 C9 PLM sing 652 n n 
C8 H81 PLM sing 653 n n 
C8 H82 PLM sing 654 n n 
C9 CA PLM sing 655 n n 
C9 H91 PLM sing 656 n n 
C9 H92 PLM sing 657 n n 
CA CB PLM sing 658 n n 
CA HA1 PLM sing 659 n n 
CA HA2 PLM sing 660 n n 
CB CC PLM sing 661 n n 
CB HB1 PLM sing 662 n n 
CB HB2 PLM sing 663 n n 
CC CD PLM sing 664 n n 
CC HC1 PLM sing 665 n n 
CC HC2 PLM sing 666 n n 
CD CE PLM sing 667 n n 
CD HD1 PLM sing 668 n n 
CD HD2 PLM sing 669 n n 
CE CF PLM sing 670 n n 
CE HE1 PLM sing 671 n n 
CE HE2 PLM sing 672 n n 
CF CG PLM sing 673 n n 
CF HF1 PLM sing 674 n n 
CF HF2 PLM sing 675 n n 
CG HG1 PLM sing 676 n n 
CG HG2 PLM sing 677 n n 
CG HG3 PLM sing 678 n n 
#
_atom_sites.entry_id                     2X72 
_atom_sites.fract_transf_matrix[1][1]    0.004099 
_atom_sites.fract_transf_matrix[1][2]    0.002366 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004733 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 PEF A 1 401 1329 PEF PEF . 
E 5 BOG A 1 402 1330 BOG BOG . 
F 6 PLM A 1 403 1331 PLM PLM . 
G 6 PLM A 1 404 1332 PLM PLM . 
H 7 RET A 1 410 1338 RET RET . 
I 8 LPP A 1 411 1340 LPP LPP . 
J 9 ACT A 1 412 1351 ACT ACT . 
K 10 HOH A 1 501 2014 HOH HOH . 
K 10 HOH A 2 502 2011 HOH HOH . 
K 10 HOH A 3 503 2009 HOH HOH . 
K 10 HOH A 4 504 2018 HOH HOH . 
K 10 HOH A 5 505 2007 HOH HOH . 
K 10 HOH A 6 506 2013 HOH HOH . 
K 10 HOH A 7 507 2003 HOH HOH . 
K 10 HOH A 8 508 2004 HOH HOH . 
K 10 HOH A 9 509 2001 HOH HOH . 
K 10 HOH A 10 510 2002 HOH HOH . 
K 10 HOH A 11 511 2010 HOH HOH . 
K 10 HOH A 12 512 2016 HOH HOH . 
K 10 HOH A 13 513 2012 HOH HOH . 
K 10 HOH A 14 514 2006 HOH HOH . 
K 10 HOH A 15 515 2017 HOH HOH . 
K 10 HOH A 16 516 2015 HOH HOH . 
L 10 HOH B 1 401 2005 HOH HOH . 
L 10 HOH B 2 402 2008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLM . . . F 6 0.154 -29.608 55.478 1 116.16 ? C1 PLM 403 A 1 
HETATM 2 O O2 PLM . . . F 6 -0.093 -28.488 55.998 1 112.11 ? O2 PLM 403 A 1 
HETATM 3 C C2 PLM . . . F 6 1.282 -30.484 56.178 1 99.03 ? C2 PLM 403 A 1 
HETATM 4 C C3 PLM . . . F 6 2.222 -29.494 56.898 1 100.83 ? C3 PLM 403 A 1 
HETATM 5 C C4 PLM . . . F 6 3.413 -29.962 57.795 1 94.68 ? C4 PLM 403 A 1 
HETATM 6 C C5 PLM . . . F 6 4.514 -30.833 57.197 1 90.96 ? C5 PLM 403 A 1 
HETATM 7 C C6 PLM . . . F 6 5.635 -30.993 58.259 1 87.54 ? C6 PLM 403 A 1 
HETATM 8 C C7 PLM . . . F 6 6.782 -31.866 57.702 1 95.6 ? C7 PLM 403 A 1 
HETATM 9 C C8 PLM . . . F 6 8.019 -31.964 58.63 1 89.48 ? C8 PLM 403 A 1 
HETATM 10 C C9 PLM . . . F 6 9.096 -32.869 57.956 1 91.64 ? C9 PLM 403 A 1 
HETATM 11 C CA PLM . . . F 6 10.432 -32.889 58.741 1 88.94 ? CA PLM 403 A 1 
HETATM 12 C CB PLM . . . F 6 11.485 -33.822 58.095 1 82.84 ? CB PLM 403 A 1 
HETATM 13 C CC PLM . . . F 6 10.918 -35.246 58.147 1 86.97 ? CC PLM 403 A 1 
HETATM 14 C CD PLM . . . F 6 11.85 -36.28 57.504 1 85.69 ? CD PLM 403 A 1 
HETATM 15 C CE PLM . . . F 6 13.228 -36.34 58.14 1 79.02 ? CE PLM 403 A 1 
HETATM 16 C CF PLM . . . F 6 14.023 -37.403 57.345 1 80.76 ? CF PLM 403 A 1 
HETATM 17 C CG PLM . . . F 6 15.456 -37.517 57.903 1 81.18 ? CG PLM 403 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           17 
#