data_2X72 # _model_server_result.job_id 4PxYHBSTh7_8Zs4_vko4Yw _model_server_result.datetime_utc '2024-11-26 17:11:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":404}' # _entry.id 2X72 # _exptl.entry_id 2X72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2X72 _cell.length_a 243.986 _cell.length_b 243.986 _cell.length_c 109.156 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 109.156 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1333 NAG 3 n C NAG 2 C 2 NAG A 1334 NAG 3 n C BMA 3 C 3 BMA A 1335 BMA 3 n C MAN 4 C 4 MAN A 1336 MAN 3 n C MAN 5 C 5 MAN A 1337 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A SG CYS 323 A CYS 322 1_555 G C1 PLM . A PLM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.674 ? covale ? covale4 A SG CYS 324 A CYS 323 1_555 F C1 PLM . A PLM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 630 n n C1 O2 PLM doub 631 n n C1 C2 PLM sing 632 n n O1 H PLM sing 633 n n C2 C3 PLM sing 634 n n C2 H21 PLM sing 635 n n C2 H22 PLM sing 636 n n C3 C4 PLM sing 637 n n C3 H31 PLM sing 638 n n C3 H32 PLM sing 639 n n C4 C5 PLM sing 640 n n C4 H41 PLM sing 641 n n C4 H42 PLM sing 642 n n C5 C6 PLM sing 643 n n C5 H51 PLM sing 644 n n C5 H52 PLM sing 645 n n C6 C7 PLM sing 646 n n C6 H61 PLM sing 647 n n C6 H62 PLM sing 648 n n C7 C8 PLM sing 649 n n C7 H71 PLM sing 650 n n C7 H72 PLM sing 651 n n C8 C9 PLM sing 652 n n C8 H81 PLM sing 653 n n C8 H82 PLM sing 654 n n C9 CA PLM sing 655 n n C9 H91 PLM sing 656 n n C9 H92 PLM sing 657 n n CA CB PLM sing 658 n n CA HA1 PLM sing 659 n n CA HA2 PLM sing 660 n n CB CC PLM sing 661 n n CB HB1 PLM sing 662 n n CB HB2 PLM sing 663 n n CC CD PLM sing 664 n n CC HC1 PLM sing 665 n n CC HC2 PLM sing 666 n n CD CE PLM sing 667 n n CD HD1 PLM sing 668 n n CD HD2 PLM sing 669 n n CE CF PLM sing 670 n n CE HE1 PLM sing 671 n n CE HE2 PLM sing 672 n n CF CG PLM sing 673 n n CF HF1 PLM sing 674 n n CF HF2 PLM sing 675 n n CG HG1 PLM sing 676 n n CG HG2 PLM sing 677 n n CG HG3 PLM sing 678 n n # _atom_sites.entry_id 2X72 _atom_sites.fract_transf_matrix[1][1] 0.004099 _atom_sites.fract_transf_matrix[1][2] 0.002366 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PEF A 1 401 1329 PEF PEF . E 5 BOG A 1 402 1330 BOG BOG . F 6 PLM A 1 403 1331 PLM PLM . G 6 PLM A 1 404 1332 PLM PLM . H 7 RET A 1 410 1338 RET RET . I 8 LPP A 1 411 1340 LPP LPP . J 9 ACT A 1 412 1351 ACT ACT . K 10 HOH A 1 501 2014 HOH HOH . K 10 HOH A 2 502 2011 HOH HOH . K 10 HOH A 3 503 2009 HOH HOH . K 10 HOH A 4 504 2018 HOH HOH . K 10 HOH A 5 505 2007 HOH HOH . K 10 HOH A 6 506 2013 HOH HOH . K 10 HOH A 7 507 2003 HOH HOH . K 10 HOH A 8 508 2004 HOH HOH . K 10 HOH A 9 509 2001 HOH HOH . K 10 HOH A 10 510 2002 HOH HOH . K 10 HOH A 11 511 2010 HOH HOH . K 10 HOH A 12 512 2016 HOH HOH . K 10 HOH A 13 513 2012 HOH HOH . K 10 HOH A 14 514 2006 HOH HOH . K 10 HOH A 15 515 2017 HOH HOH . K 10 HOH A 16 516 2015 HOH HOH . L 10 HOH B 1 401 2005 HOH HOH . L 10 HOH B 2 402 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . G 6 4.292 -25.72 55.631 1 107.61 ? C1 PLM 404 A 1 HETATM 2 O O2 PLM . . . G 6 3.725 -26.116 56.68 1 106.44 ? O2 PLM 404 A 1 HETATM 3 C C2 PLM . . . G 6 5.681 -26.342 55.238 1 103.1 ? C2 PLM 404 A 1 HETATM 4 C C3 PLM . . . G 6 5.72 -27.753 55.836 1 105.47 ? C3 PLM 404 A 1 HETATM 5 C C4 PLM . . . G 6 6.934 -28.675 55.552 1 100.65 ? C4 PLM 404 A 1 HETATM 6 C C5 PLM . . . G 6 8.311 -28.188 55.994 1 105.74 ? C5 PLM 404 A 1 HETATM 7 C C6 PLM . . . G 6 9.328 -29.321 55.675 1 105.15 ? C6 PLM 404 A 1 HETATM 8 C C7 PLM . . . G 6 10.763 -28.921 56.076 1 104.05 ? C7 PLM 404 A 1 HETATM 9 C C8 PLM . . . G 6 11.804 -30.054 55.836 1 114.23 ? C8 PLM 404 A 1 HETATM 10 C C9 PLM . . . G 6 13.179 -29.493 56.283 1 117.04 ? C9 PLM 404 A 1 HETATM 11 C CA PLM . . . G 6 14.453 -30.376 56.21 1 94.6 ? CA PLM 404 A 1 HETATM 12 C CB PLM . . . G 6 15.513 -29.369 56.686 1 93.65 ? CB PLM 404 A 1 HETATM 13 C CC PLM . . . G 6 16.943 -29.878 56.681 1 98.4 ? CC PLM 404 A 1 HETATM 14 C CD PLM . . . G 6 17.895 -28.72 57.096 1 97.27 ? CD PLM 404 A 1 HETATM 15 C CE PLM . . . G 6 19.344 -29.235 57.017 1 93.03 ? CE PLM 404 A 1 HETATM 16 C CF PLM . . . G 6 20.407 -28.199 57.378 1 92.83 ? CF PLM 404 A 1 HETATM 17 C CG PLM . . . G 6 21.796 -28.864 57.241 1 84.32 ? CG PLM 404 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 17 #