data_2X72 # _model_server_result.job_id UhxlK4RTAfXq9s3ZwaD69A _model_server_result.datetime_utc '2024-11-26 18:09:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":411}' # _entry.id 2X72 # _exptl.entry_id 2X72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 648.891 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2X72 _cell.length_a 243.986 _cell.length_b 243.986 _cell.length_c 109.156 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 109.156 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1333 NAG 3 n C NAG 2 C 2 NAG A 1334 NAG 3 n C BMA 3 C 3 BMA A 1335 BMA 3 n C MAN 4 C 4 MAN A 1336 MAN 3 n C MAN 5 C 5 MAN A 1337 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A SG CYS 323 A CYS 322 1_555 G C1 PLM . A PLM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.674 ? covale ? covale4 A SG CYS 324 A CYS 323 1_555 F C1 PLM . A PLM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? # _chem_comp.formula 'C35 H69 O8 P' _chem_comp.formula_weight 648.891 _chem_comp.id LPP _chem_comp.mon_nstd_flag . _chem_comp.name '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE;L-B,G-DIPALMITOYL-A-PHOSPHATIDIC ACID DISODIUM SALT;3-SN-PHOSPHATIDIC ACID;1,2-DIPALMITOYLDISODIUM SALT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O2 LPP sing 278 n n P1 O3 LPP doub 279 n n P1 O4 LPP sing 280 n n P1 O5 LPP sing 281 n n O2 HO2 LPP sing 282 n n O4 HO4 LPP sing 283 n n O5 C6 LPP sing 284 n n C6 C7 LPP sing 285 n n C6 HC61 LPP sing 286 n n C6 HC62 LPP sing 287 n n C7 C8 LPP sing 288 n n C7 O9 LPP sing 289 n n C7 HC7 LPP sing 290 n n C8 O27 LPP sing 291 n n C8 HC81 LPP sing 292 n n C8 HC82 LPP sing 293 n n O9 C11 LPP sing 294 n n O27 C29 LPP sing 295 n n C11 O10 LPP doub 296 n n C11 C12 LPP sing 297 n n C12 C13 LPP sing 298 n n C12 H121 LPP sing 299 n n C12 H122 LPP sing 300 n n C13 C14 LPP sing 301 n n C13 H131 LPP sing 302 n n C13 H132 LPP sing 303 n n C14 C15 LPP sing 304 n n C14 H141 LPP sing 305 n n C14 H142 LPP sing 306 n n C15 C16 LPP sing 307 n n C15 H151 LPP sing 308 n n C15 H152 LPP sing 309 n n C16 C17 LPP sing 310 n n C16 H161 LPP sing 311 n n C16 H162 LPP sing 312 n n C17 C18 LPP sing 313 n n C17 H171 LPP sing 314 n n C17 H172 LPP sing 315 n n C18 C19 LPP sing 316 n n C18 H181 LPP sing 317 n n C18 H182 LPP sing 318 n n C19 C20 LPP sing 319 n n C19 H191 LPP sing 320 n n C19 H192 LPP sing 321 n n C20 C21 LPP sing 322 n n C20 H201 LPP sing 323 n n C20 H202 LPP sing 324 n n C21 C22 LPP sing 325 n n C21 H211 LPP sing 326 n n C21 H212 LPP sing 327 n n C22 C23 LPP sing 328 n n C22 H221 LPP sing 329 n n C22 H222 LPP sing 330 n n C23 C24 LPP sing 331 n n C23 H231 LPP sing 332 n n C23 H232 LPP sing 333 n n C24 C25 LPP sing 334 n n C24 H241 LPP sing 335 n n C24 H242 LPP sing 336 n n C25 C26 LPP sing 337 n n C25 H251 LPP sing 338 n n C25 H252 LPP sing 339 n n C26 H261 LPP sing 340 n n C26 H262 LPP sing 341 n n C26 H263 LPP sing 342 n n C29 O28 LPP doub 343 n n C29 C30 LPP sing 344 n n C30 C31 LPP sing 345 n n C30 H301 LPP sing 346 n n C30 H302 LPP sing 347 n n C31 C32 LPP sing 348 n n C31 H311 LPP sing 349 n n C31 H312 LPP sing 350 n n C32 C33 LPP sing 351 n n C32 H321 LPP sing 352 n n C32 H322 LPP sing 353 n n C33 C34 LPP sing 354 n n C33 H331 LPP sing 355 n n C33 H332 LPP sing 356 n n C34 C35 LPP sing 357 n n C34 H341 LPP sing 358 n n C34 H342 LPP sing 359 n n C35 C36 LPP sing 360 n n C35 H351 LPP sing 361 n n C35 H352 LPP sing 362 n n C36 C37 LPP sing 363 n n C36 H361 LPP sing 364 n n C36 H362 LPP sing 365 n n C37 C38 LPP sing 366 n n C37 H371 LPP sing 367 n n C37 H372 LPP sing 368 n n C38 C39 LPP sing 369 n n C38 H381 LPP sing 370 n n C38 H382 LPP sing 371 n n C39 C40 LPP sing 372 n n C39 H391 LPP sing 373 n n C39 H392 LPP sing 374 n n C40 C41 LPP sing 375 n n C40 H401 LPP sing 376 n n C40 H402 LPP sing 377 n n C41 C42 LPP sing 378 n n C41 H411 LPP sing 379 n n C41 H412 LPP sing 380 n n C42 C43 LPP sing 381 n n C42 H421 LPP sing 382 n n C42 H422 LPP sing 383 n n C43 C44 LPP sing 384 n n C43 H431 LPP sing 385 n n C43 H432 LPP sing 386 n n C44 H441 LPP sing 387 n n C44 H442 LPP sing 388 n n C44 H443 LPP sing 389 n n # _atom_sites.entry_id 2X72 _atom_sites.fract_transf_matrix[1][1] 0.004099 _atom_sites.fract_transf_matrix[1][2] 0.002366 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PEF A 1 401 1329 PEF PEF . E 5 BOG A 1 402 1330 BOG BOG . F 6 PLM A 1 403 1331 PLM PLM . G 6 PLM A 1 404 1332 PLM PLM . H 7 RET A 1 410 1338 RET RET . I 8 LPP A 1 411 1340 LPP LPP . J 9 ACT A 1 412 1351 ACT ACT . K 10 HOH A 1 501 2014 HOH HOH . K 10 HOH A 2 502 2011 HOH HOH . K 10 HOH A 3 503 2009 HOH HOH . K 10 HOH A 4 504 2018 HOH HOH . K 10 HOH A 5 505 2007 HOH HOH . K 10 HOH A 6 506 2013 HOH HOH . K 10 HOH A 7 507 2003 HOH HOH . K 10 HOH A 8 508 2004 HOH HOH . K 10 HOH A 9 509 2001 HOH HOH . K 10 HOH A 10 510 2002 HOH HOH . K 10 HOH A 11 511 2010 HOH HOH . K 10 HOH A 12 512 2016 HOH HOH . K 10 HOH A 13 513 2012 HOH HOH . K 10 HOH A 14 514 2006 HOH HOH . K 10 HOH A 15 515 2017 HOH HOH . K 10 HOH A 16 516 2015 HOH HOH . L 10 HOH B 1 401 2005 HOH HOH . L 10 HOH B 2 402 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 LPP . . . I 8 -6.691 -30.438 52.373 1 186.84 ? P1 LPP 411 A 1 HETATM 2 O O2 LPP . . . I 8 -7.274 -29.033 52.419 1 163.78 ? O2 LPP 411 A 1 HETATM 3 O O3 LPP . . . I 8 -7.619 -31.541 52.842 1 175.91 ? O3 LPP 411 A 1 HETATM 4 O O4 LPP . . . I 8 -5.956 -30.771 51.092 1 179.69 ? O4 LPP 411 A 1 HETATM 5 O O5 LPP . . . I 8 -5.522 -30.404 53.488 1 165.49 ? O5 LPP 411 A 1 HETATM 6 C C6 LPP . . . I 8 -5.345 -31.492 54.399 1 156.08 ? C6 LPP 411 A 1 HETATM 7 C C7 LPP . . . I 8 -5.579 -31.027 55.837 1 151.96 ? C7 LPP 411 A 1 HETATM 8 C C8 LPP . . . I 8 -5.656 -32.252 56.746 1 145.5 ? C8 LPP 411 A 1 HETATM 9 O O9 LPP . . . I 8 -4.579 -30.079 56.263 1 144.21 ? O9 LPP 411 A 1 HETATM 10 O O27 LPP . . . I 8 -6.993 -32.704 56.936 1 145.81 ? O27 LPP 411 A 1 HETATM 11 C C11 LPP . . . I 8 -3.651 -30.514 57.317 1 135 ? C11 LPP 411 A 1 HETATM 12 O O10 LPP . . . I 8 -3.513 -29.761 58.278 1 120.35 ? O10 LPP 411 A 1 HETATM 13 C C12 LPP . . . I 8 -2.866 -31.825 57.219 1 124.52 ? C12 LPP 411 A 1 HETATM 14 C C13 LPP . . . I 8 -1.668 -31.855 58.167 1 109.87 ? C13 LPP 411 A 1 HETATM 15 C C14 LPP . . . I 8 -1.59 -33.16 58.957 1 104.43 ? C14 LPP 411 A 1 HETATM 16 C C15 LPP . . . I 8 -0.631 -34.172 58.337 1 93.09 ? C15 LPP 411 A 1 HETATM 17 C C16 LPP . . . I 8 0.762 -33.577 58.134 1 97.73 ? C16 LPP 411 A 1 HETATM 18 C C17 LPP . . . I 8 1.577 -33.466 59.424 1 87.78 ? C17 LPP 411 A 1 HETATM 19 C C18 LPP . . . I 8 2.048 -34.821 59.935 1 82.75 ? C18 LPP 411 A 1 HETATM 20 C C19 LPP . . . I 8 3.18 -34.671 60.944 1 79.67 ? C19 LPP 411 A 1 HETATM 21 C C20 LPP . . . I 8 4.519 -34.524 60.225 1 87.36 ? C20 LPP 411 A 1 HETATM 22 C C21 LPP . . . I 8 5.565 -35.551 60.66 1 79.18 ? C21 LPP 411 A 1 HETATM 23 C C22 LPP . . . I 8 6.285 -36.123 59.436 1 85.63 ? C22 LPP 411 A 1 HETATM 24 C C23 LPP . . . I 8 7.504 -36.98 59.796 1 88.8 ? C23 LPP 411 A 1 HETATM 25 C C24 LPP . . . I 8 7.478 -38.388 59.18 1 88.03 ? C24 LPP 411 A 1 HETATM 26 C C25 LPP . . . I 8 8.899 -38.925 58.972 1 88.8 ? C25 LPP 411 A 1 HETATM 27 C C26 LPP . . . I 8 9.05 -40.397 59.322 1 79.58 ? C26 LPP 411 A 1 HETATM 28 C C29 LPP . . . I 8 -7.261 -33.406 58.18 1 141.4 ? C29 LPP 411 A 1 HETATM 29 O O28 LPP . . . I 8 -8.33 -33.188 58.745 1 130.94 ? O28 LPP 411 A 1 HETATM 30 C C30 LPP . . . I 8 -6.18 -34.341 58.723 1 130.63 ? C30 LPP 411 A 1 HETATM 31 C C31 LPP . . . I 8 -6.678 -35.719 59.166 1 120.77 ? C31 LPP 411 A 1 HETATM 32 C C32 LPP . . . I 8 -6.98 -35.77 60.668 1 122.41 ? C32 LPP 411 A 1 HETATM 33 C C33 LPP . . . I 8 -8.15 -34.854 61.049 1 128.48 ? C33 LPP 411 A 1 HETATM 34 C C34 LPP . . . I 8 -8.495 -34.823 62.541 1 117.88 ? C34 LPP 411 A 1 HETATM 35 C C35 LPP . . . I 8 -7.294 -34.474 63.422 1 112.32 ? C35 LPP 411 A 1 HETATM 36 C C36 LPP . . . I 8 -6.916 -35.632 64.345 1 108.1 ? C36 LPP 411 A 1 HETATM 37 C C37 LPP . . . I 8 -5.666 -35.316 65.16 1 98.36 ? C37 LPP 411 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #