data_2X7F
#
_model_server_result.job_id            miydXsqtTYqYg2-Jdyd8Lg 
_model_server_result.datetime_utc      '2024-11-25 01:51:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2x7f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1315}' 
#
_entry.id    2X7F 
#
_exptl.entry_id    2X7F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.87 
_cell.angle_gamma         90 
_cell.entry_id            2X7F 
_cell.length_a            52.972 
_cell.length_b            79.074 
_cell.length_c            214.159 
_cell.Z_PDB               10 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2X7F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G 1 1 
B,H,I,P 2 1 
C,J,K,Q 3 1 
D,L,M 4 1 
E,N,O 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 78 A SER 77 1_555 G NA NA . A NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc2 A O HIS 80 A HIS 79 1_555 G NA NA . A NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc3 A O ILE 83 A ILE 82 1_555 G NA NA . A NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc4 A OG1 THR 85 A THR 84 1_555 G NA NA . A NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc5 B O SER 78 B SER 77 1_555 I NA NA . B NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc6 B O HIS 80 B HIS 79 1_555 I NA NA . B NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc7 B O ILE 83 B ILE 82 1_555 I NA NA . B NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc8 B OG1 THR 85 B THR 84 1_555 I NA NA . B NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc9 I NA NA . B NA 1315 1_555 P O HOH . B HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc10 C O SER 78 C SER 77 1_555 K NA NA . C NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? 
metalc ? metalc11 C O HIS 80 C HIS 79 1_555 K NA NA . C NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc12 C O ILE 83 C ILE 82 1_555 K NA NA . C NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc13 C OG1 THR 85 C THR 84 1_555 K NA NA . C NA 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc14 D O SER 78 D SER 77 1_555 M NA NA . D NA 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc15 D N HIS 80 D HIS 79 1_555 M NA NA . D NA 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? 
metalc ? metalc16 D O HIS 80 D HIS 79 1_555 M NA NA . D NA 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc17 D O ILE 83 D ILE 82 1_555 M NA NA . D NA 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc18 D OG1 THR 85 D THR 84 1_555 M NA NA . D NA 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc19 E O SER 78 E SER 77 1_555 O NA NA . E NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc20 E O HIS 80 E HIS 79 1_555 O NA NA . E NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc21 E O ILE 83 E ILE 82 1_555 O NA NA . E NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc22 E OG1 THR 85 E THR 84 1_555 O NA NA . E NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2X7F 
_atom_sites.fract_transf_matrix[1][1]    0.018878 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000616 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012646 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004672 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 824 A 1 500 500 824 824 . 
G 3 NA A 1 1315 1315 NA NA . 
H 2 824 B 1 500 500 824 824 . 
I 3 NA B 1 1315 1315 NA NA . 
J 2 824 C 1 500 500 824 824 . 
K 3 NA C 1 1315 1315 NA NA . 
L 2 824 D 1 500 500 824 824 . 
M 3 NA D 1 1308 1308 NA NA . 
N 2 824 E 1 500 500 824 824 . 
O 3 NA E 1 1311 1311 NA NA . 
P 4 HOH B 1 2001 2001 HOH HOH . 
P 4 HOH B 2 2002 2002 HOH HOH . 
P 4 HOH B 3 2003 2003 HOH HOH . 
P 4 HOH B 4 2004 2004 HOH HOH . 
P 4 HOH B 5 2005 2005 HOH HOH . 
P 4 HOH B 6 2006 2006 HOH HOH . 
P 4 HOH B 7 2007 2007 HOH HOH . 
P 4 HOH B 8 2008 2008 HOH HOH . 
P 4 HOH B 9 2009 2009 HOH HOH . 
P 4 HOH B 10 2010 2010 HOH HOH . 
P 4 HOH B 11 2011 2011 HOH HOH . 
P 4 HOH B 12 2012 2012 HOH HOH . 
P 4 HOH B 13 2013 2013 HOH HOH . 
P 4 HOH B 14 2014 2014 HOH HOH . 
Q 4 HOH C 1 2001 2001 HOH HOH . 
Q 4 HOH C 2 2002 2002 HOH HOH . 
Q 4 HOH C 3 2003 2003 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               9.85 
_atom_site.Cartn_y               -5.824 
_atom_site.Cartn_z               108.418 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        56.36 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1315 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#