data_2X9D # _model_server_result.job_id vJJz3X9iSPQHDKJKTlriSg _model_server_result.datetime_utc '2024-11-26 14:44:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1209}' # _entry.id 2X9D # _exptl.entry_id 2X9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.88 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ISO-7-CHLORTETRACYCLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2X9D _cell.length_a 68.253 _cell.length_b 68.253 _cell.length_c 179.271 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 68.253 68.253 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H23 Cl N2 O8' _chem_comp.formula_weight 478.88 _chem_comp.id ITC _chem_comp.mon_nstd_flag . _chem_comp.name ISO-7-CHLORTETRACYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (4S,4AS,6S,8AS)-6-[(1S)-7-CHLORO-4-HYDROXY-1-METHYL-3-OXO-1,3-DIHYDRO-2-BENZOFURAN-1-YL]-4-(DIMETHYLAMINO)-3,8A-DIHYDROXY-1,8-DIOXO-1,4,4A,5,6,7,8,8A-OCTAHYDRONAPHTHALENE-2-CARBOXAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 ITC doub 160 n n C1 C2 ITC sing 161 n n C1 C4B ITC sing 162 n n C2 C2' ITC sing 163 n n C2 C3 ITC doub 164 n n C2' O2' ITC doub 165 n n C2' N2' ITC sing 166 n n C3 O3 ITC sing 167 n n C3 C4 ITC sing 168 n n C4 N4 ITC sing 169 n n C4 C4A ITC sing 170 n n N4 C4' ITC sing 171 n n N4 C4D ITC sing 172 n n C4A C5 ITC sing 173 n n C4A C4B ITC sing 174 n n C5 C5A ITC sing 175 n n C5A C6 ITC sing 176 n n C5A C5B ITC sing 177 n n C6 O6 ITC sing 178 n n C6 C6' ITC sing 179 n n C6 C6A ITC sing 180 n n O6 C11 ITC sing 181 n n C6A C7 ITC sing 182 n y C6A C6B ITC doub 183 n y C7 CL7 ITC sing 184 n n C7 C8 ITC doub 185 n y C8 C9 ITC sing 186 n y C9 C10 ITC doub 187 n y C10 O10 ITC sing 188 n n C10 C6B ITC sing 189 n y C6B C11 ITC sing 190 n n O11 C11 ITC doub 191 n n C5B C12 ITC sing 192 n n C12 O12 ITC doub 193 n n C12 C4B ITC sing 194 n n C4B O4B ITC sing 195 n n N2' "H2'1" ITC sing 196 n n N2' "H2'2" ITC sing 197 n n O3 H3 ITC sing 198 n n C4 H4 ITC sing 199 n n C4A H4A ITC sing 200 n n C4' "H4'1" ITC sing 201 n n C4' "H4'2" ITC sing 202 n n C4' "H4'3" ITC sing 203 n n C4D H4D1 ITC sing 204 n n C4D H4D2 ITC sing 205 n n C4D H4D3 ITC sing 206 n n C5 H51C ITC sing 207 n n C5 H52C ITC sing 208 n n C5A H5A ITC sing 209 n n C5B H5B1 ITC sing 210 n n C5B H5B2 ITC sing 211 n n C6' "H6'1" ITC sing 212 n n C6' "H6'2" ITC sing 213 n n C6' "H6'3" ITC sing 214 n n C8 H8 ITC sing 215 n n C9 H9 ITC sing 216 n n O10 H10 ITC sing 217 n n O4B H4B ITC sing 218 n n # _atom_sites.entry_id 2X9D _atom_sites.fract_transf_matrix[1][1] 0.014651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ITC A 1 1209 1209 ITC ITC . C 3 CL A 1 1210 1210 CL CL . D 3 CL A 1 1211 1211 CL CL . E 3 CL A 1 1212 1212 CL CL . F 3 CL A 1 1213 1213 CL CL . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . G 4 HOH A 63 2063 2063 HOH HOH . G 4 HOH A 64 2064 2064 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ITC . . . B 2 20.334 34.708 33.807 1 45.73 ? C1 ITC 1209 A 1 HETATM 2 O O1 ITC . . . B 2 19.772 35.312 32.867 1 49.77 ? O1 ITC 1209 A 1 HETATM 3 C C2 ITC . . . B 2 19.587 33.806 34.667 1 44.65 ? C2 ITC 1209 A 1 HETATM 4 C C2' ITC . . . B 2 18.318 33.189 34.212 1 44.26 ? C2' ITC 1209 A 1 HETATM 5 O O2' ITC . . . B 2 17.749 32.364 34.92 1 43.64 ? O2' ITC 1209 A 1 HETATM 6 N N2' ITC . . . B 2 17.721 33.612 33.095 1 42.02 ? N2' ITC 1209 A 1 HETATM 7 C C3 ITC . . . B 2 20.099 33.524 35.906 1 43.75 ? C3 ITC 1209 A 1 HETATM 8 O O3 ITC . . . B 2 19.466 32.659 36.702 1 44.65 ? O3 ITC 1209 A 1 HETATM 9 C C4 ITC . . . B 2 21.319 34.185 36.504 1 44.17 ? C4 ITC 1209 A 1 HETATM 10 N N4 ITC . . . B 2 22.125 33.218 37.28 1 43.68 ? N4 ITC 1209 A 1 HETATM 11 C C4' ITC . . . B 2 23.1 32.429 36.507 1 40.45 ? C4' ITC 1209 A 1 HETATM 12 C C4D ITC . . . B 2 22.723 33.936 38.399 1 39.73 ? C4D ITC 1209 A 1 HETATM 13 C C4A ITC . . . B 2 22.119 35.099 35.533 1 44.8 ? C4A ITC 1209 A 1 HETATM 14 C C5 ITC . . . B 2 21.793 36.574 35.848 1 45.27 ? C5 ITC 1209 A 1 HETATM 15 C C5A ITC . . . B 2 22.514 37.565 34.93 1 45.29 ? C5A ITC 1209 A 1 HETATM 16 C C6 ITC . . . B 2 22.24 39.06 35.213 1 46.11 ? C6 ITC 1209 A 1 HETATM 17 O O6 ITC . . . B 2 20.868 39.387 34.943 1 44.82 ? O6 ITC 1209 A 1 HETATM 18 C C6' ITC . . . B 2 22.496 39.514 36.655 1 44.82 ? C6' ITC 1209 A 1 HETATM 19 C C6A ITC . . . B 2 23 39.88 34.199 1 48.48 ? C6A ITC 1209 A 1 HETATM 20 C C7 ITC . . . B 2 24.38 39.987 33.952 1 50.57 ? C7 ITC 1209 A 1 HETATM 21 CL CL7 ITC . . . B 2 25.579 39.121 34.913 1 53.14 ? CL7 ITC 1209 A 1 HETATM 22 C C8 ITC . . . B 2 24.852 40.813 32.924 1 51.17 ? C8 ITC 1209 A 1 HETATM 23 C C9 ITC . . . B 2 23.936 41.506 32.126 1 51.4 ? C9 ITC 1209 A 1 HETATM 24 C C10 ITC . . . B 2 22.565 41.372 32.371 1 50.44 ? C10 ITC 1209 A 1 HETATM 25 O O10 ITC . . . B 2 21.685 42.015 31.62 1 55.24 ? O10 ITC 1209 A 1 HETATM 26 C C6B ITC . . . B 2 22.127 40.568 33.415 1 48.5 ? C6B ITC 1209 A 1 HETATM 27 O O11 ITC . . . B 2 19.71 40.78 33.208 1 47.57 ? O11 ITC 1209 A 1 HETATM 28 C C5B ITC . . . B 2 22.159 37.167 33.517 1 45.95 ? C5B ITC 1209 A 1 HETATM 29 C C12 ITC . . . B 2 22.485 35.88 33.232 1 47.87 ? C12 ITC 1209 A 1 HETATM 30 O O12 ITC . . . B 2 23.402 35.594 32.338 1 47.84 ? O12 ITC 1209 A 1 HETATM 31 C C4B ITC . . . B 2 21.849 34.801 34.054 1 46.38 ? C4B ITC 1209 A 1 HETATM 32 O O4B ITC . . . B 2 22.485 33.562 33.764 1 45.95 ? O4B ITC 1209 A 1 HETATM 33 C C11 ITC . . . B 2 20.743 40.295 33.807 1 47.22 ? C11 ITC 1209 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #