data_2X9K # _model_server_result.job_id NCgQsB_JWsHnoibRMoXO5w _model_server_result.datetime_utc '2024-10-19 17:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1285}' # _entry.id 2X9K # _exptl.entry_id 2X9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2X9K _cell.length_a 55.61 _cell.length_b 70.96 _cell.length_c 119.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2X9K _atom_sites.fract_transf_matrix[1][1] 0.017982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 1281 1281 BOG BOG . C 2 BOG A 1 1282 1282 BOG BOG . D 2 BOG A 1 1283 1283 BOG BOG . E 2 BOG A 1 1284 1284 BOG BOG . F 2 BOG A 1 1285 1285 BOG BOG . G 2 BOG A 1 1286 1286 BOG BOG . H 2 BOG A 1 1287 1287 BOG BOG . I 2 BOG A 1 1288 1288 BOG BOG . J 2 BOG A 1 1289 1289 BOG BOG . K 3 HOH A 1 2001 2001 HOH HOH . K 3 HOH A 2 2002 2002 HOH HOH . K 3 HOH A 3 2003 2003 HOH HOH . K 3 HOH A 4 2004 2004 HOH HOH . K 3 HOH A 5 2005 2005 HOH HOH . K 3 HOH A 6 2006 2006 HOH HOH . K 3 HOH A 7 2007 2007 HOH HOH . K 3 HOH A 8 2008 2008 HOH HOH . K 3 HOH A 9 2009 2009 HOH HOH . K 3 HOH A 10 2010 2010 HOH HOH . K 3 HOH A 11 2011 2011 HOH HOH . K 3 HOH A 12 2012 2012 HOH HOH . K 3 HOH A 13 2013 2013 HOH HOH . K 3 HOH A 14 2014 2014 HOH HOH . K 3 HOH A 15 2015 2015 HOH HOH . K 3 HOH A 16 2016 2016 HOH HOH . K 3 HOH A 17 2017 2017 HOH HOH . K 3 HOH A 18 2018 2018 HOH HOH . K 3 HOH A 19 2019 2019 HOH HOH . K 3 HOH A 20 2020 2020 HOH HOH . K 3 HOH A 21 2021 2021 HOH HOH . K 3 HOH A 22 2022 2022 HOH HOH . K 3 HOH A 23 2023 2023 HOH HOH . K 3 HOH A 24 2024 2024 HOH HOH . K 3 HOH A 25 2025 2025 HOH HOH . K 3 HOH A 26 2026 2026 HOH HOH . K 3 HOH A 27 2027 2027 HOH HOH . K 3 HOH A 28 2028 2028 HOH HOH . K 3 HOH A 29 2029 2029 HOH HOH . K 3 HOH A 30 2030 2030 HOH HOH . K 3 HOH A 31 2031 2031 HOH HOH . K 3 HOH A 32 2032 2032 HOH HOH . K 3 HOH A 33 2033 2033 HOH HOH . K 3 HOH A 34 2034 2034 HOH HOH . K 3 HOH A 35 2035 2035 HOH HOH . K 3 HOH A 36 2036 2036 HOH HOH . K 3 HOH A 37 2037 2037 HOH HOH . K 3 HOH A 38 2038 2038 HOH HOH . K 3 HOH A 39 2039 2039 HOH HOH . K 3 HOH A 40 2040 2040 HOH HOH . K 3 HOH A 41 2041 2041 HOH HOH . K 3 HOH A 42 2042 2042 HOH HOH . K 3 HOH A 43 2043 2043 HOH HOH . K 3 HOH A 44 2044 2044 HOH HOH . K 3 HOH A 45 2045 2045 HOH HOH . K 3 HOH A 46 2046 2046 HOH HOH . K 3 HOH A 47 2047 2047 HOH HOH . K 3 HOH A 48 2048 2048 HOH HOH . K 3 HOH A 49 2049 2049 HOH HOH . K 3 HOH A 50 2050 2050 HOH HOH . K 3 HOH A 51 2051 2051 HOH HOH . K 3 HOH A 52 2052 2052 HOH HOH . K 3 HOH A 53 2053 2053 HOH HOH . K 3 HOH A 54 2054 2054 HOH HOH . K 3 HOH A 55 2055 2055 HOH HOH . K 3 HOH A 56 2056 2056 HOH HOH . K 3 HOH A 57 2057 2057 HOH HOH . K 3 HOH A 58 2058 2058 HOH HOH . K 3 HOH A 59 2059 2059 HOH HOH . K 3 HOH A 60 2060 2060 HOH HOH . K 3 HOH A 61 2061 2061 HOH HOH . K 3 HOH A 62 2062 2062 HOH HOH . K 3 HOH A 63 2063 2063 HOH HOH . K 3 HOH A 64 2064 2064 HOH HOH . K 3 HOH A 65 2065 2065 HOH HOH . K 3 HOH A 66 2066 2066 HOH HOH . K 3 HOH A 67 2067 2067 HOH HOH . K 3 HOH A 68 2068 2068 HOH HOH . K 3 HOH A 69 2069 2069 HOH HOH . K 3 HOH A 70 2070 2070 HOH HOH . K 3 HOH A 71 2071 2071 HOH HOH . K 3 HOH A 72 2072 2072 HOH HOH . K 3 HOH A 73 2073 2073 HOH HOH . K 3 HOH A 74 2074 2074 HOH HOH . K 3 HOH A 75 2075 2075 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . F 2 -19.418 -4.622 28.91 1 66.83 ? C1 BOG 1285 A 1 HETATM 2 O O1 BOG . . . F 2 -18.254 -5.35 29.278 1 67.55 ? O1 BOG 1285 A 1 HETATM 3 C C2 BOG . . . F 2 -20.207 -5.247 27.742 1 67.46 ? C2 BOG 1285 A 1 HETATM 4 O O2 BOG . . . F 2 -20.762 -6.512 28.113 1 68.84 ? O2 BOG 1285 A 1 HETATM 5 C C3 BOG . . . F 2 -21.297 -4.266 27.318 1 63.69 ? C3 BOG 1285 A 1 HETATM 6 O O3 BOG . . . F 2 -22.175 -4.703 26.277 1 65.19 ? O3 BOG 1285 A 1 HETATM 7 C C4 BOG . . . F 2 -20.552 -3.045 26.85 1 64.42 ? C4 BOG 1285 A 1 HETATM 8 O O4 BOG . . . F 2 -21.411 -2.205 26.092 1 68.21 ? O4 BOG 1285 A 1 HETATM 9 C C5 BOG . . . F 2 -20.095 -2.464 28.172 1 70.89 ? C5 BOG 1285 A 1 HETATM 10 O O5 BOG . . . F 2 -19.021 -3.276 28.645 1 64.4 ? O5 BOG 1285 A 1 HETATM 11 C C6 BOG . . . F 2 -19.709 -0.988 28.176 1 79.22 ? C6 BOG 1285 A 1 HETATM 12 O O6 BOG . . . F 2 -20.176 -0.486 29.433 1 81.22 ? O6 BOG 1285 A 1 HETATM 13 C C1' BOG . . . F 2 -17.158 -4.477 29.542 1 72.19 ? C1' BOG 1285 A 1 HETATM 14 C C2' BOG . . . F 2 -16.129 -5.159 30.435 1 75.66 ? C2' BOG 1285 A 1 HETATM 15 C C3' BOG . . . F 2 -14.757 -4.499 30.269 1 75.71 ? C3' BOG 1285 A 1 HETATM 16 C C4' BOG . . . F 2 -13.901 -4.582 31.528 1 74.57 ? C4' BOG 1285 A 1 HETATM 17 C C5' BOG . . . F 2 -12.449 -4.842 31.131 1 76.78 ? C5' BOG 1285 A 1 HETATM 18 C C6' BOG . . . F 2 -11.502 -4.783 32.329 1 73.35 ? C6' BOG 1285 A 1 HETATM 19 C C7' BOG . . . F 2 -10.158 -5.38 31.967 1 65.56 ? C7' BOG 1285 A 1 HETATM 20 C C8' BOG . . . F 2 -10.039 -5.356 30.465 1 66.52 ? C8' BOG 1285 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #