data_2XAA # _model_server_result.job_id e7twubLOIrJyL-Ct-IG6rw _model_server_result.datetime_utc '2024-11-28 00:15:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xaa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1348}' # _entry.id 2XAA # _exptl.entry_id 2XAA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-BUTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.27 _cell.angle_gamma 90 _cell.entry_id 2XAA _cell.length_a 65.674 _cell.length_b 105.1 _cell.length_c 109.176 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XAA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 1 1 A,D,E,F,G,P,Q,R,S,T,W 2 1 B,C,H,I,J,K,L,M,N,O,U,V 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 O N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 38 A CYS 38 1_555 F ZN ZN . A ZN 1346 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc2 A SG CYS 92 A CYS 92 1_555 G ZN ZN . A ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A SG CYS 95 A CYS 95 1_555 G ZN ZN . A ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 A SG CYS 98 A CYS 98 1_555 G ZN ZN . A ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc5 A SG CYS 106 A CYS 106 1_555 G ZN ZN . A ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc6 A OD2 ASP 153 A ASP 153 1_555 F ZN ZN . A ZN 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc7 B SG CYS 38 B CYS 38 1_555 I ZN ZN . B ZN 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 B NE2 HIS 62 B HIS 62 1_555 I ZN ZN . B ZN 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc9 B SG CYS 92 B CYS 92 1_555 K ZN ZN . B ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc10 B SG CYS 95 B CYS 95 1_555 K ZN ZN . B ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc11 B SG CYS 98 B CYS 98 1_555 K ZN ZN . B ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc12 B SG CYS 106 B CYS 106 1_555 K ZN ZN . B ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc13 B OD2 ASP 153 B ASP 153 1_555 I ZN ZN . B ZN 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc14 C SG CYS 38 C CYS 38 1_555 M ZN ZN . C ZN 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc15 C NE2 HIS 62 C HIS 62 1_555 M ZN ZN . C ZN 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc16 C SG CYS 92 C CYS 92 1_555 N ZN ZN . C ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc17 C SG CYS 95 C CYS 95 1_555 N ZN ZN . C ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc18 C SG CYS 98 C CYS 98 1_555 N ZN ZN . C ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc19 C SG CYS 106 C CYS 106 1_555 N ZN ZN . C ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc20 C OD2 ASP 153 C ASP 153 1_555 M ZN ZN . C ZN 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.707 ? metalc ? metalc21 D SG CYS 38 D CYS 38 1_555 Q ZN ZN . D ZN 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc22 D NE2 HIS 62 D HIS 62 1_555 Q ZN ZN . D ZN 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc23 D SG CYS 92 D CYS 92 1_555 S ZN ZN . D ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc24 D SG CYS 95 D CYS 95 1_555 S ZN ZN . D ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc25 D SG CYS 98 D CYS 98 1_555 S ZN ZN . D ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc26 D SG CYS 106 D CYS 106 1_555 S ZN ZN . D ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc27 D OD2 ASP 153 D ASP 153 1_555 Q ZN ZN . D ZN 1346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc28 Q ZN ZN . D ZN 1346 1_555 R O6 BU1 . D BU1 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BU1 sing 70 n n C1 O5 BU1 sing 71 n n C1 H11 BU1 sing 72 n n C1 H12 BU1 sing 73 n n C2 C3 BU1 sing 74 n n C2 H21 BU1 sing 75 n n C2 H22 BU1 sing 76 n n C3 C4 BU1 sing 77 n n C3 H31 BU1 sing 78 n n C3 H32 BU1 sing 79 n n C4 O6 BU1 sing 80 n n C4 H41 BU1 sing 81 n n C4 H42 BU1 sing 82 n n O5 HO5 BU1 sing 83 n n O6 HO6 BU1 sing 84 n n # _atom_sites.entry_id 2XAA _atom_sites.fract_transf_matrix[1][1] 0.015227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000338 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 503 503 NAD NAD . F 3 ZN A 1 1346 1346 ZN ZN . G 3 ZN A 1 1347 1347 ZN ZN . H 2 NAD B 1 503 503 NAD NAD . I 3 ZN B 1 1346 1346 ZN ZN . J 4 BU1 B 1 1347 1347 BU1 BU1 . K 3 ZN B 1 1348 1348 ZN ZN . L 2 NAD C 1 503 503 NAD NAD . M 3 ZN C 1 1346 1346 ZN ZN . N 3 ZN C 1 1347 1347 ZN ZN . O 4 BU1 C 1 1348 1348 BU1 BU1 . P 2 NAD D 1 503 503 NAD NAD . Q 3 ZN D 1 1346 1346 ZN ZN . R 4 BU1 D 1 1347 1347 BU1 BU1 . S 3 ZN D 1 1348 1348 ZN ZN . T 5 HOH A 1 2001 2001 HOH HOH . T 5 HOH A 2 2002 2002 HOH HOH . T 5 HOH A 3 2003 2003 HOH HOH . T 5 HOH A 4 2004 2004 HOH HOH . T 5 HOH A 5 2005 2005 HOH HOH . T 5 HOH A 6 2006 2006 HOH HOH . T 5 HOH A 7 2007 2007 HOH HOH . T 5 HOH A 8 2008 2008 HOH HOH . T 5 HOH A 9 2009 2009 HOH HOH . T 5 HOH A 10 2010 2010 HOH HOH . T 5 HOH A 11 2011 2011 HOH HOH . T 5 HOH A 12 2012 2012 HOH HOH . T 5 HOH A 13 2013 2013 HOH HOH . T 5 HOH A 14 2014 2014 HOH HOH . T 5 HOH A 15 2015 2015 HOH HOH . T 5 HOH A 16 2016 2016 HOH HOH . T 5 HOH A 17 2017 2017 HOH HOH . T 5 HOH A 18 2018 2018 HOH HOH . T 5 HOH A 19 2019 2019 HOH HOH . T 5 HOH A 20 2020 2020 HOH HOH . T 5 HOH A 21 2021 2021 HOH HOH . T 5 HOH A 22 2022 2022 HOH HOH . T 5 HOH A 23 2023 2023 HOH HOH . T 5 HOH A 24 2024 2024 HOH HOH . T 5 HOH A 25 2025 2025 HOH HOH . T 5 HOH A 26 2026 2026 HOH HOH . T 5 HOH A 27 2027 2027 HOH HOH . T 5 HOH A 28 2028 2028 HOH HOH . U 5 HOH B 1 2001 2001 HOH HOH . U 5 HOH B 2 2002 2002 HOH HOH . U 5 HOH B 3 2003 2003 HOH HOH . U 5 HOH B 4 2004 2004 HOH HOH . U 5 HOH B 5 2005 2005 HOH HOH . U 5 HOH B 6 2006 2006 HOH HOH . U 5 HOH B 7 2007 2007 HOH HOH . U 5 HOH B 8 2008 2008 HOH HOH . U 5 HOH B 9 2009 2009 HOH HOH . U 5 HOH B 10 2010 2010 HOH HOH . U 5 HOH B 11 2011 2011 HOH HOH . U 5 HOH B 12 2012 2012 HOH HOH . U 5 HOH B 13 2013 2013 HOH HOH . U 5 HOH B 14 2014 2014 HOH HOH . U 5 HOH B 15 2015 2015 HOH HOH . U 5 HOH B 16 2016 2016 HOH HOH . U 5 HOH B 17 2017 2017 HOH HOH . U 5 HOH B 18 2018 2018 HOH HOH . U 5 HOH B 19 2019 2019 HOH HOH . U 5 HOH B 20 2020 2020 HOH HOH . U 5 HOH B 21 2021 2021 HOH HOH . U 5 HOH B 22 2022 2022 HOH HOH . U 5 HOH B 23 2023 2023 HOH HOH . U 5 HOH B 24 2024 2024 HOH HOH . U 5 HOH B 25 2025 2025 HOH HOH . U 5 HOH B 26 2026 2026 HOH HOH . U 5 HOH B 27 2027 2027 HOH HOH . U 5 HOH B 28 2028 2028 HOH HOH . U 5 HOH B 29 2029 2029 HOH HOH . U 5 HOH B 30 2030 2030 HOH HOH . U 5 HOH B 31 2031 2031 HOH HOH . U 5 HOH B 32 2032 2032 HOH HOH . U 5 HOH B 33 2033 2033 HOH HOH . U 5 HOH B 34 2034 2034 HOH HOH . U 5 HOH B 35 2035 2035 HOH HOH . U 5 HOH B 36 2036 2036 HOH HOH . U 5 HOH B 37 2037 2037 HOH HOH . U 5 HOH B 38 2038 2038 HOH HOH . U 5 HOH B 39 2039 2039 HOH HOH . V 5 HOH C 1 2001 2001 HOH HOH . V 5 HOH C 2 2002 2002 HOH HOH . V 5 HOH C 3 2003 2003 HOH HOH . V 5 HOH C 4 2004 2004 HOH HOH . V 5 HOH C 5 2005 2005 HOH HOH . V 5 HOH C 6 2006 2006 HOH HOH . V 5 HOH C 7 2007 2007 HOH HOH . V 5 HOH C 8 2008 2008 HOH HOH . V 5 HOH C 9 2009 2009 HOH HOH . V 5 HOH C 10 2010 2010 HOH HOH . V 5 HOH C 11 2011 2011 HOH HOH . V 5 HOH C 12 2012 2012 HOH HOH . V 5 HOH C 13 2013 2013 HOH HOH . V 5 HOH C 14 2014 2014 HOH HOH . V 5 HOH C 15 2015 2015 HOH HOH . V 5 HOH C 16 2016 2016 HOH HOH . V 5 HOH C 17 2017 2017 HOH HOH . V 5 HOH C 18 2018 2018 HOH HOH . V 5 HOH C 19 2019 2019 HOH HOH . V 5 HOH C 20 2020 2020 HOH HOH . V 5 HOH C 21 2021 2021 HOH HOH . V 5 HOH C 22 2022 2022 HOH HOH . V 5 HOH C 23 2023 2023 HOH HOH . V 5 HOH C 24 2024 2024 HOH HOH . V 5 HOH C 25 2025 2025 HOH HOH . V 5 HOH C 26 2026 2026 HOH HOH . V 5 HOH C 27 2027 2027 HOH HOH . V 5 HOH C 28 2028 2028 HOH HOH . V 5 HOH C 29 2029 2029 HOH HOH . V 5 HOH C 30 2030 2030 HOH HOH . V 5 HOH C 31 2031 2031 HOH HOH . V 5 HOH C 32 2032 2032 HOH HOH . V 5 HOH C 33 2033 2033 HOH HOH . V 5 HOH C 34 2034 2034 HOH HOH . V 5 HOH C 35 2035 2035 HOH HOH . V 5 HOH C 36 2036 2036 HOH HOH . V 5 HOH C 37 2037 2037 HOH HOH . V 5 HOH C 38 2038 2038 HOH HOH . W 5 HOH D 1 2001 2001 HOH HOH . W 5 HOH D 2 2002 2002 HOH HOH . W 5 HOH D 3 2003 2003 HOH HOH . W 5 HOH D 4 2004 2004 HOH HOH . W 5 HOH D 5 2005 2005 HOH HOH . W 5 HOH D 6 2006 2006 HOH HOH . W 5 HOH D 7 2007 2007 HOH HOH . W 5 HOH D 8 2008 2008 HOH HOH . W 5 HOH D 9 2009 2009 HOH HOH . W 5 HOH D 10 2010 2010 HOH HOH . W 5 HOH D 11 2011 2011 HOH HOH . W 5 HOH D 12 2012 2012 HOH HOH . W 5 HOH D 13 2013 2013 HOH HOH . W 5 HOH D 14 2014 2014 HOH HOH . W 5 HOH D 15 2015 2015 HOH HOH . W 5 HOH D 16 2016 2016 HOH HOH . W 5 HOH D 17 2017 2017 HOH HOH . W 5 HOH D 18 2018 2018 HOH HOH . W 5 HOH D 19 2019 2019 HOH HOH . W 5 HOH D 20 2020 2020 HOH HOH . W 5 HOH D 21 2021 2021 HOH HOH . W 5 HOH D 22 2022 2022 HOH HOH . W 5 HOH D 23 2023 2023 HOH HOH . W 5 HOH D 24 2024 2024 HOH HOH . W 5 HOH D 25 2025 2025 HOH HOH . W 5 HOH D 26 2026 2026 HOH HOH . W 5 HOH D 27 2027 2027 HOH HOH . W 5 HOH D 28 2028 2028 HOH HOH . W 5 HOH D 29 2029 2029 HOH HOH . W 5 HOH D 30 2030 2030 HOH HOH . W 5 HOH D 31 2031 2031 HOH HOH . W 5 HOH D 32 2032 2032 HOH HOH . W 5 HOH D 33 2033 2033 HOH HOH . W 5 HOH D 34 2034 2034 HOH HOH . W 5 HOH D 35 2035 2035 HOH HOH . W 5 HOH D 36 2036 2036 HOH HOH . W 5 HOH D 37 2037 2037 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BU1 . . . O 4 24.901 23.98 30.402 1 40.93 ? C1 BU1 1348 C 1 HETATM 2 C C2 BU1 . . . O 4 24.593 24.03 28.895 1 41.3 ? C2 BU1 1348 C 1 HETATM 3 C C3 BU1 . . . O 4 23.525 25.066 28.521 1 43.52 ? C3 BU1 1348 C 1 HETATM 4 C C4 BU1 . . . O 4 24.084 26.503 28.595 1 45.74 ? C4 BU1 1348 C 1 HETATM 5 O O5 BU1 . . . O 4 26.129 23.29 30.672 1 38.94 ? O5 BU1 1348 C 1 HETATM 6 O O6 BU1 . . . O 4 23.094 27.545 28.71 1 44.91 ? O6 BU1 1348 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #