data_2XAG # _model_server_result.job_id UW0VEWKdJSLtaRgHwYEclg _model_server_result.datetime_utc '2024-11-04 22:57:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 2XAG # _exptl.entry_id 2XAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XAG _cell.length_a 116.47 _cell.length_b 178.03 _cell.length_c 236 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id N5 _struct_conn.ptnr1_label_comp_id FAD _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id FAD _struct_conn.ptnr1_auth_seq_id 900 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C1B _struct_conn.ptnr2_label_comp_id TCF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id TCF _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.491 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 2XAG _atom_sites.fract_transf_matrix[1][1] 0.008586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 900 900 FAD FAD . D 4 TCF A 1 901 901 TCF TCF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 3 -6.959 67.099 89.247 1 39.98 ? PA FAD 900 A 1 HETATM 2 O O1A FAD . . . C 3 -6.022 67.475 88.098 1 39.64 ? O1A FAD 900 A 1 HETATM 3 O O2A FAD . . . C 3 -8.357 66.498 89.053 1 40.58 ? O2A FAD 900 A 1 HETATM 4 O O5B FAD . . . C 3 -7.238 68.452 90.072 1 39.43 ? O5B FAD 900 A 1 HETATM 5 C C5B FAD . . . C 3 -6.22 69.457 90.093 1 36.26 ? C5B FAD 900 A 1 HETATM 6 C C4B FAD . . . C 3 -6.98 70.748 89.969 1 34.77 ? C4B FAD 900 A 1 HETATM 7 O O4B FAD . . . C 3 -6.122 71.819 90.275 1 33.21 ? O4B FAD 900 A 1 HETATM 8 C C3B FAD . . . C 3 -7.492 70.982 88.568 1 35.26 ? C3B FAD 900 A 1 HETATM 9 O O3B FAD . . . C 3 -8.902 71.246 88.674 1 36.54 ? O3B FAD 900 A 1 HETATM 10 C C2B FAD . . . C 3 -6.674 72.174 88.082 1 34.11 ? C2B FAD 900 A 1 HETATM 11 O O2B FAD . . . C 3 -7.334 72.971 87.095 1 32.17 ? O2B FAD 900 A 1 HETATM 12 C C1B FAD . . . C 3 -6.411 72.894 89.39 1 33.7 ? C1B FAD 900 A 1 HETATM 13 N N9A FAD . . . C 3 -5.233 73.807 89.364 1 35.16 ? N9A FAD 900 A 1 HETATM 14 C C8A FAD . . . C 3 -4.006 73.549 88.849 1 34.82 ? C8A FAD 900 A 1 HETATM 15 N N7A FAD . . . C 3 -3.209 74.628 89.041 1 34.25 ? N7A FAD 900 A 1 HETATM 16 C C5A FAD . . . C 3 -3.945 75.542 89.691 1 34.12 ? C5A FAD 900 A 1 HETATM 17 C C6A FAD . . . C 3 -3.626 76.798 90.125 1 34.63 ? C6A FAD 900 A 1 HETATM 18 N N6A FAD . . . C 3 -2.389 77.249 89.877 1 34.71 ? N6A FAD 900 A 1 HETATM 19 N N1A FAD . . . C 3 -4.532 77.543 90.782 1 36 ? N1A FAD 900 A 1 HETATM 20 C C2A FAD . . . C 3 -5.907 77.07 91.046 1 35.02 ? C2A FAD 900 A 1 HETATM 21 N N3A FAD . . . C 3 -6.175 75.735 90.541 1 32.88 ? N3A FAD 900 A 1 HETATM 22 C C4A FAD . . . C 3 -5.217 75.03 89.903 1 33.89 ? C4A FAD 900 A 1 HETATM 23 N N1 FAD . . . C 3 -8.482 57.403 86.141 1 57.96 ? N1 FAD 900 A 1 HETATM 24 C C2 FAD . . . C 3 -9.509 56.521 86.3 1 59.3 ? C2 FAD 900 A 1 HETATM 25 O O2 FAD . . . C 3 -9.92 56.188 87.551 1 57.6 ? O2 FAD 900 A 1 HETATM 26 N N3 FAD . . . C 3 -10.158 55.962 85.236 1 60.64 ? N3 FAD 900 A 1 HETATM 27 C C4 FAD . . . C 3 -9.85 56.279 83.957 1 60.1 ? C4 FAD 900 A 1 HETATM 28 O O4 FAD . . . C 3 -10.483 55.709 82.895 1 59.26 ? O4 FAD 900 A 1 HETATM 29 C C4X FAD . . . C 3 -8.667 57.13 83.729 1 60.29 ? C4X FAD 900 A 1 HETATM 30 N N5 FAD . . . C 3 -8.465 57.652 82.368 1 63.09 ? N5 FAD 900 A 1 HETATM 31 C C5X FAD . . . C 3 -7.745 58.879 82.308 1 61.69 ? C5X FAD 900 A 1 HETATM 32 C C6 FAD . . . C 3 -7.784 59.569 81.098 1 61.18 ? C6 FAD 900 A 1 HETATM 33 C C7 FAD . . . C 3 -7.169 60.798 80.942 1 62.42 ? C7 FAD 900 A 1 HETATM 34 C C7M FAD . . . C 3 -7.212 61.519 79.622 1 62.67 ? C7M FAD 900 A 1 HETATM 35 C C8 FAD . . . C 3 -6.508 61.366 82.007 1 62.37 ? C8 FAD 900 A 1 HETATM 36 C C8M FAD . . . C 3 -5.84 62.701 81.797 1 60.33 ? C8M FAD 900 A 1 HETATM 37 C C9 FAD . . . C 3 -6.472 60.686 83.234 1 62.08 ? C9 FAD 900 A 1 HETATM 38 C C9A FAD . . . C 3 -7.111 59.44 83.425 1 61.15 ? C9A FAD 900 A 1 HETATM 39 N N10 FAD . . . C 3 -7.024 58.718 84.683 1 58.86 ? N10 FAD 900 A 1 HETATM 40 C C10 FAD . . . C 3 -8.092 57.811 84.908 1 58.69 ? C10 FAD 900 A 1 HETATM 41 C C1' FAD . . . C 3 -6.605 59.533 85.866 1 54.86 ? C1' FAD 900 A 1 HETATM 42 C C2' FAD . . . C 3 -7.598 60.478 86.568 1 50.82 ? C2' FAD 900 A 1 HETATM 43 O O2' FAD . . . C 3 -8.308 61.231 85.585 1 48.61 ? O2' FAD 900 A 1 HETATM 44 C C3' FAD . . . C 3 -6.834 61.397 87.541 1 48.08 ? C3' FAD 900 A 1 HETATM 45 O O3' FAD . . . C 3 -5.893 60.642 88.315 1 47.71 ? O3' FAD 900 A 1 HETATM 46 C C4' FAD . . . C 3 -7.665 62.156 88.565 1 45.9 ? C4' FAD 900 A 1 HETATM 47 O O4' FAD . . . C 3 -8.797 62.775 87.933 1 45.88 ? O4' FAD 900 A 1 HETATM 48 C C5' FAD . . . C 3 -6.739 63.163 89.299 1 44.33 ? C5' FAD 900 A 1 HETATM 49 O O5' FAD . . . C 3 -7.425 63.989 90.27 1 41.23 ? O5' FAD 900 A 1 HETATM 50 P P FAD . . . C 3 -6.732 65.098 91.23 1 39.3 ? P FAD 900 A 1 HETATM 51 O O1P FAD . . . C 3 -5.531 64.549 91.998 1 35.89 ? O1P FAD 900 A 1 HETATM 52 O O2P FAD . . . C 3 -7.911 65.743 91.979 1 38.22 ? O2P FAD 900 A 1 HETATM 53 O O3P FAD . . . C 3 -6.071 66.166 90.218 1 37.81 ? O3P FAD 900 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #