data_2XAH # _model_server_result.job_id y0D15hLrGGIPvDkiYqWXPA _model_server_result.datetime_utc '2024-11-08 04:38:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 2XAH # _exptl.entry_id 2XAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XAH _cell.length_a 119.959 _cell.length_b 181.498 _cell.length_c 234.706 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id N5 _struct_conn.ptnr1_label_comp_id FAD _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id FAD _struct_conn.ptnr1_auth_seq_id 900 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id CB _struct_conn.ptnr2_label_comp_id 3PL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 3PL _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.511 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 103 n n PA O2A FAD sing 104 n n PA O5B FAD sing 105 n n PA O3P FAD sing 106 n n O2A HOA2 FAD sing 107 n n O5B C5B FAD sing 108 n n C5B C4B FAD sing 109 n n C5B H51A FAD sing 110 n n C5B H52A FAD sing 111 n n C4B O4B FAD sing 112 n n C4B C3B FAD sing 113 n n C4B H4B FAD sing 114 n n O4B C1B FAD sing 115 n n C3B O3B FAD sing 116 n n C3B C2B FAD sing 117 n n C3B H3B FAD sing 118 n n O3B HO3A FAD sing 119 n n C2B O2B FAD sing 120 n n C2B C1B FAD sing 121 n n C2B H2B FAD sing 122 n n O2B HO2A FAD sing 123 n n C1B N9A FAD sing 124 n n C1B H1B FAD sing 125 n n N9A C8A FAD sing 126 n y N9A C4A FAD sing 127 n y C8A N7A FAD doub 128 n y C8A H8A FAD sing 129 n n N7A C5A FAD sing 130 n y C5A C6A FAD sing 131 n y C5A C4A FAD doub 132 n y C6A N6A FAD sing 133 n n C6A N1A FAD doub 134 n y N6A H61A FAD sing 135 n n N6A H62A FAD sing 136 n n N1A C2A FAD sing 137 n y C2A N3A FAD doub 138 n y C2A H2A FAD sing 139 n n N3A C4A FAD sing 140 n y N1 C2 FAD sing 141 n n N1 C10 FAD doub 142 n n C2 O2 FAD doub 143 n n C2 N3 FAD sing 144 n n N3 C4 FAD sing 145 n n N3 HN3 FAD sing 146 n n C4 O4 FAD doub 147 n n C4 C4X FAD sing 148 n n C4X N5 FAD doub 149 n n C4X C10 FAD sing 150 n n N5 C5X FAD sing 151 n n C5X C6 FAD doub 152 n y C5X C9A FAD sing 153 n y C6 C7 FAD sing 154 n y C6 H6 FAD sing 155 n n C7 C7M FAD sing 156 n n C7 C8 FAD doub 157 n y C7M HM71 FAD sing 158 n n C7M HM72 FAD sing 159 n n C7M HM73 FAD sing 160 n n C8 C8M FAD sing 161 n n C8 C9 FAD sing 162 n y C8M HM81 FAD sing 163 n n C8M HM82 FAD sing 164 n n C8M HM83 FAD sing 165 n n C9 C9A FAD doub 166 n y C9 H9 FAD sing 167 n n C9A N10 FAD sing 168 n n N10 C10 FAD sing 169 n n N10 C1' FAD sing 170 n n C1' C2' FAD sing 171 n n C1' "H1'1" FAD sing 172 n n C1' "H1'2" FAD sing 173 n n C2' O2' FAD sing 174 n n C2' C3' FAD sing 175 n n C2' H2' FAD sing 176 n n O2' HO2' FAD sing 177 n n C3' O3' FAD sing 178 n n C3' C4' FAD sing 179 n n C3' H3' FAD sing 180 n n O3' HO3' FAD sing 181 n n C4' O4' FAD sing 182 n n C4' C5' FAD sing 183 n n C4' H4' FAD sing 184 n n O4' HO4' FAD sing 185 n n C5' O5' FAD sing 186 n n C5' "H5'1" FAD sing 187 n n C5' "H5'2" FAD sing 188 n n O5' P FAD sing 189 n n P O1P FAD doub 190 n n P O2P FAD sing 191 n n P O3P FAD sing 192 n n O2P HOP2 FAD sing 193 n n # _atom_sites.entry_id 2XAH _atom_sites.fract_transf_matrix[1][1] 0.008336 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 900 900 FAD FAD . D 4 3PL A 1 901 901 3PL 3PL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 3 -6.574 68.758 88.211 1 28.33 ? PA FAD 900 A 1 HETATM 2 O O1A FAD . . . C 3 -5.548 69.152 87.125 1 28.46 ? O1A FAD 900 A 1 HETATM 3 O O2A FAD . . . C 3 -7.936 68.111 87.936 1 23.07 ? O2A FAD 900 A 1 HETATM 4 O O5B FAD . . . C 3 -7.007 70.15 88.957 1 29.52 ? O5B FAD 900 A 1 HETATM 5 C C5B FAD . . . C 3 -6.099 71.208 89.316 1 26.5 ? C5B FAD 900 A 1 HETATM 6 C C4B FAD . . . C 3 -6.771 72.553 89.091 1 25.41 ? C4B FAD 900 A 1 HETATM 7 O O4B FAD . . . C 3 -5.842 73.595 89.373 1 25.41 ? O4B FAD 900 A 1 HETATM 8 C C3B FAD . . . C 3 -7.184 72.76 87.655 1 25.68 ? C3B FAD 900 A 1 HETATM 9 O O3B FAD . . . C 3 -8.537 73.186 87.688 1 26.65 ? O3B FAD 900 A 1 HETATM 10 C C2B FAD . . . C 3 -6.294 73.872 87.142 1 25.66 ? C2B FAD 900 A 1 HETATM 11 O O2B FAD . . . C 3 -6.927 74.678 86.153 1 25.31 ? O2B FAD 900 A 1 HETATM 12 C C1B FAD . . . C 3 -6.005 74.633 88.416 1 25.51 ? C1B FAD 900 A 1 HETATM 13 N N9A FAD . . . C 3 -4.787 75.452 88.312 1 25.84 ? N9A FAD 900 A 1 HETATM 14 C C8A FAD . . . C 3 -3.652 75.109 87.681 1 27 ? C8A FAD 900 A 1 HETATM 15 N N7A FAD . . . C 3 -2.765 76.129 87.806 1 29.16 ? N7A FAD 900 A 1 HETATM 16 C C5A FAD . . . C 3 -3.372 77.1 88.54 1 28.61 ? C5A FAD 900 A 1 HETATM 17 C C6A FAD . . . C 3 -2.947 78.358 88.982 1 28.98 ? C6A FAD 900 A 1 HETATM 18 N N6A FAD . . . C 3 -1.69 78.795 88.654 1 29.9 ? N6A FAD 900 A 1 HETATM 19 N N1A FAD . . . C 3 -3.83 79.106 89.713 1 27.66 ? N1A FAD 900 A 1 HETATM 20 C C2A FAD . . . C 3 -5.082 78.654 90.007 1 24.47 ? C2A FAD 900 A 1 HETATM 21 N N3A FAD . . . C 3 -5.503 77.452 89.595 1 23.11 ? N3A FAD 900 A 1 HETATM 22 C C4A FAD . . . C 3 -4.662 76.665 88.859 1 26.11 ? C4A FAD 900 A 1 HETATM 23 N N1 FAD . . . C 3 -8.411 59.003 85.587 1 47.13 ? N1 FAD 900 A 1 HETATM 24 C C2 FAD . . . C 3 -9.463 58.146 85.747 1 48.07 ? C2 FAD 900 A 1 HETATM 25 O O2 FAD . . . C 3 -9.883 57.827 86.874 1 47.8 ? O2 FAD 900 A 1 HETATM 26 N N3 FAD . . . C 3 -10.105 57.61 84.686 1 48.33 ? N3 FAD 900 A 1 HETATM 27 C C4 FAD . . . C 3 -9.757 57.905 83.421 1 47.16 ? C4 FAD 900 A 1 HETATM 28 O O4 FAD . . . C 3 -10.397 57.397 82.479 1 45.43 ? O4 FAD 900 A 1 HETATM 29 C C4X FAD . . . C 3 -8.711 58.775 83.182 1 47.99 ? C4X FAD 900 A 1 HETATM 30 N N5 FAD . . . C 3 -8.256 58.978 81.868 1 51.41 ? N5 FAD 900 A 1 HETATM 31 C C5X FAD . . . C 3 -7.57 60.19 81.699 1 49.39 ? C5X FAD 900 A 1 HETATM 32 C C6 FAD . . . C 3 -7.578 60.731 80.418 1 48.26 ? C6 FAD 900 A 1 HETATM 33 C C7 FAD . . . C 3 -6.943 61.937 80.173 1 48.31 ? C7 FAD 900 A 1 HETATM 34 C C7M FAD . . . C 3 -6.958 62.513 78.782 1 47.86 ? C7M FAD 900 A 1 HETATM 35 C C8 FAD . . . C 3 -6.298 62.602 81.213 1 48.57 ? C8 FAD 900 A 1 HETATM 36 C C8M FAD . . . C 3 -5.611 63.926 80.959 1 46.99 ? C8M FAD 900 A 1 HETATM 37 C C9 FAD . . . C 3 -6.29 62.05 82.498 1 48.11 ? C9 FAD 900 A 1 HETATM 38 C C9A FAD . . . C 3 -6.945 60.842 82.771 1 47.84 ? C9A FAD 900 A 1 HETATM 39 N N10 FAD . . . C 3 -6.902 60.24 84.082 1 45.76 ? N10 FAD 900 A 1 HETATM 40 C C10 FAD . . . C 3 -7.994 59.363 84.343 1 46.38 ? C10 FAD 900 A 1 HETATM 41 C C1' FAD . . . C 3 -6.418 61.155 85.165 1 41.3 ? C1' FAD 900 A 1 HETATM 42 C C2' FAD . . . C 3 -7.4 62.012 85.956 1 38.35 ? C2' FAD 900 A 1 HETATM 43 O O2' FAD . . . C 3 -8.223 62.768 85.069 1 37.82 ? O2' FAD 900 A 1 HETATM 44 C C3' FAD . . . C 3 -6.62 62.989 86.827 1 36.59 ? C3' FAD 900 A 1 HETATM 45 O O3' FAD . . . C 3 -5.666 62.287 87.631 1 34.43 ? O3' FAD 900 A 1 HETATM 46 C C4' FAD . . . C 3 -7.494 63.843 87.759 1 36.9 ? C4' FAD 900 A 1 HETATM 47 O O4' FAD . . . C 3 -8.706 64.383 87.133 1 34.37 ? O4' FAD 900 A 1 HETATM 48 C C5' FAD . . . C 3 -6.568 64.9 88.428 1 35.3 ? C5' FAD 900 A 1 HETATM 49 O O5' FAD . . . C 3 -7.27 65.793 89.314 1 31.25 ? O5' FAD 900 A 1 HETATM 50 P P FAD . . . C 3 -6.444 66.814 90.227 1 28.66 ? P FAD 900 A 1 HETATM 51 O O1P FAD . . . C 3 -7.601 67.481 90.965 1 32.8 ? O1P FAD 900 A 1 HETATM 52 O O2P FAD . . . C 3 -5.347 66.115 91.037 1 26.49 ? O2P FAD 900 A 1 HETATM 53 O O3P FAD . . . C 3 -5.736 67.894 89.277 1 25.53 ? O3P FAD 900 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #