data_2XAL # _model_server_result.job_id lJFiAtaKFKqLsf5ygufmHg _model_server_result.datetime_utc '2024-11-23 12:01:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2XAL # _exptl.entry_id 2XAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XAL _cell.length_a 58.063 _cell.length_b 110.971 _cell.length_c 138.694 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 330 B CYS 330 1_555 B SG CYS 333 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc1 A ND1 HIS 320 A HIS 320 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc2 A SG CYS 330 A CYS 330 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc3 A SG CYS 333 A CYS 333 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 A NE2 HIS 346 A HIS 346 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 A OD2 ASP 407 A ASP 407 1_555 D PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 A OD1 ASP 407 A ASP 407 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc7 A OD2 ASP 407 A ASP 407 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc8 A OG SER 409 A SER 409 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc9 C O23 IHP . A IHP 500 1_555 D PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc10 C O43 IHP . A IHP 500 1_555 D PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc11 C O43 IHP . A IHP 500 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc12 D PB PB . A PB 501 1_555 F O2B ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? metalc ? metalc13 D PB PB . A PB 501 1_555 F O3B ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc14 D PB PB . A PB 501 1_555 F O2A ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc15 E PB PB . A PB 502 1_555 F O2B ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc16 B ND1 HIS 320 B HIS 320 1_555 L ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc17 B SG CYS 330 B CYS 330 1_555 L ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc18 B NE2 HIS 346 B HIS 346 1_555 L ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? metalc ? metalc19 B OD2 ASP 407 B ASP 407 1_555 I PB PB . B PB 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc20 B OD1 ASP 407 B ASP 407 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc21 B OD2 ASP 407 B ASP 407 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc22 B OG SER 409 B SER 409 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc23 H O23 IHP . B IHP 500 1_555 I PB PB . B PB 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc24 H O43 IHP . B IHP 500 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc25 I PB PB . B PB 503 1_555 K O1B ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc26 I PB PB . B PB 503 1_555 K O1A ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc27 J PB PB . B PB 504 1_555 K O2B ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc28 J PB PB . B PB 504 1_555 K O1B ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 194 n n C1 C6 IHP sing 195 n n C1 O11 IHP sing 196 n n C1 H1 IHP sing 197 n n C2 C3 IHP sing 198 n n C2 O12 IHP sing 199 n n C2 H2 IHP sing 200 n n C3 C4 IHP sing 201 n n C3 O13 IHP sing 202 n n C3 H3 IHP sing 203 n n C4 C5 IHP sing 204 n n C4 O14 IHP sing 205 n n C4 H4 IHP sing 206 n n C5 C6 IHP sing 207 n n C5 O15 IHP sing 208 n n C5 H5 IHP sing 209 n n C6 O16 IHP sing 210 n n C6 H6 IHP sing 211 n n O11 P1 IHP sing 212 n n P1 O21 IHP doub 213 n n P1 O31 IHP sing 214 n n P1 O41 IHP sing 215 n n O31 H31 IHP sing 216 n n O41 H41 IHP sing 217 n n O12 P2 IHP sing 218 n n P2 O22 IHP doub 219 n n P2 O32 IHP sing 220 n n P2 O42 IHP sing 221 n n O32 H32 IHP sing 222 n n O42 H42 IHP sing 223 n n O13 P3 IHP sing 224 n n P3 O23 IHP doub 225 n n P3 O33 IHP sing 226 n n P3 O43 IHP sing 227 n n O33 H33 IHP sing 228 n n O43 H43 IHP sing 229 n n O14 P4 IHP sing 230 n n P4 O24 IHP doub 231 n n P4 O34 IHP sing 232 n n P4 O44 IHP sing 233 n n O34 H34 IHP sing 234 n n O44 H44 IHP sing 235 n n O15 P5 IHP sing 236 n n P5 O25 IHP doub 237 n n P5 O35 IHP sing 238 n n P5 O45 IHP sing 239 n n O35 H35 IHP sing 240 n n O45 H45 IHP sing 241 n n O16 P6 IHP sing 242 n n P6 O26 IHP doub 243 n n P6 O36 IHP sing 244 n n P6 O46 IHP sing 245 n n O36 H36 IHP sing 246 n n O46 H46 IHP sing 247 n n # _atom_sites.entry_id 2XAL _atom_sites.fract_transf_matrix[1][1] 0.017223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHP A 1 500 500 IHP I6P . D 3 PB A 1 501 501 PB PB . E 3 PB A 1 502 502 PB PB . F 4 ADP A 1 600 600 ADP ADP . G 5 ZN A 1 700 700 ZN ZN . H 2 IHP B 1 500 500 IHP I6P . I 3 PB B 1 503 503 PB PB . J 3 PB B 1 504 504 PB PB . K 4 ADP B 1 600 600 ADP ADP . L 5 ZN B 1 700 700 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . C 2 37.809 66.977 46.351 1 12.97 ? C1 IHP 500 A 1 HETATM 2 C C2 IHP . . . C 2 38.984 67.202 45.436 1 14.43 ? C2 IHP 500 A 1 HETATM 3 C C3 IHP . . . C 2 39.233 68.674 45.208 1 14.81 ? C3 IHP 500 A 1 HETATM 4 C C4 IHP . . . C 2 39.514 69.363 46.539 1 15.25 ? C4 IHP 500 A 1 HETATM 5 C C5 IHP . . . C 2 38.367 69.13 47.515 1 13.01 ? C5 IHP 500 A 1 HETATM 6 C C6 IHP . . . C 2 38.057 67.663 47.66 1 12.09 ? C6 IHP 500 A 1 HETATM 7 O O11 IHP . . . C 2 37.813 65.61 46.685 1 13.33 ? O11 IHP 500 A 1 HETATM 8 P P1 IHP . . . C 2 36.625 64.64 46.21 1 13.76 ? P1 IHP 500 A 1 HETATM 9 O O21 IHP . . . C 2 35.907 64.339 47.499 1 14.83 ? O21 IHP 500 A 1 HETATM 10 O O31 IHP . . . C 2 35.812 65.479 45.252 1 10.96 ? O31 IHP 500 A 1 HETATM 11 O O41 IHP . . . C 2 37.351 63.426 45.643 1 12.46 ? O41 IHP 500 A 1 HETATM 12 O O12 IHP . . . C 2 38.716 66.653 44.16 1 16.16 ? O12 IHP 500 A 1 HETATM 13 P P2 IHP . . . C 2 39.993 66.411 43.218 1 17.12 ? P2 IHP 500 A 1 HETATM 14 O O22 IHP . . . C 2 40.066 67.705 42.43 1 17.72 ? O22 IHP 500 A 1 HETATM 15 O O32 IHP . . . C 2 41.109 66.181 44.221 1 17.54 ? O32 IHP 500 A 1 HETATM 16 O O42 IHP . . . C 2 39.657 65.179 42.421 1 16.8 ? O42 IHP 500 A 1 HETATM 17 O O13 IHP . . . C 2 38.116 69.214 44.488 1 13.03 ? O13 IHP 500 A 1 HETATM 18 P P3 IHP . . . C 2 38.442 70.042 43.144 1 11.74 ? P3 IHP 500 A 1 HETATM 19 O O23 IHP . . . C 2 38.368 71.466 43.643 1 12.76 ? O23 IHP 500 A 1 HETATM 20 O O33 IHP . . . C 2 39.852 69.623 42.772 1 11.12 ? O33 IHP 500 A 1 HETATM 21 O O43 IHP . . . C 2 37.375 69.667 42.15 1 9.98 ? O43 IHP 500 A 1 HETATM 22 O O14 IHP . . . C 2 39.747 70.75 46.294 1 19.36 ? O14 IHP 500 A 1 HETATM 23 P P4 IHP . . . C 2 41.033 71.488 46.944 1 22.22 ? P4 IHP 500 A 1 HETATM 24 O O24 IHP . . . C 2 42.261 70.939 46.235 1 21.65 ? O24 IHP 500 A 1 HETATM 25 O O34 IHP . . . C 2 40.877 71.101 48.389 1 22.21 ? O34 IHP 500 A 1 HETATM 26 O O44 IHP . . . C 2 40.771 72.965 46.71 1 24.13 ? O44 IHP 500 A 1 HETATM 27 O O15 IHP . . . C 2 38.681 69.547 48.834 1 10.47 ? O15 IHP 500 A 1 HETATM 28 P P5 IHP . . . C 2 37.701 70.592 49.561 1 10.43 ? P5 IHP 500 A 1 HETATM 29 O O25 IHP . . . C 2 37.45 70.046 50.934 1 10.8 ? O25 IHP 500 A 1 HETATM 30 O O35 IHP . . . C 2 38.602 71.807 49.502 1 9.48 ? O35 IHP 500 A 1 HETATM 31 O O45 IHP . . . C 2 36.404 70.675 48.758 1 9.91 ? O45 IHP 500 A 1 HETATM 32 O O16 IHP . . . C 2 36.868 67.571 48.405 1 10.92 ? O16 IHP 500 A 1 HETATM 33 P P6 IHP . . . C 2 36.841 66.727 49.764 1 10.95 ? P6 IHP 500 A 1 HETATM 34 O O26 IHP . . . C 2 35.365 66.73 50.06 1 11.11 ? O26 IHP 500 A 1 HETATM 35 O O36 IHP . . . C 2 37.443 65.387 49.406 1 10.87 ? O36 IHP 500 A 1 HETATM 36 O O46 IHP . . . C 2 37.673 67.477 50.784 1 12.21 ? O46 IHP 500 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #