data_2XAL
#
_model_server_result.job_id            HpLq4JBQj21OPfTruEumGg 
_model_server_result.datetime_utc      '2024-11-23 12:31:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xal 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":500}' 
#
_entry.id    2XAL 
#
_exptl.entry_id    2XAL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              660.035 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'INOSITOL HEXAKISPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2XAL 
_cell.length_a            58.063 
_cell.length_b            110.971 
_cell.length_c            138.694 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XAL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G 1 1 
B,H,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 330 B CYS 330 1_555 B SG CYS 333 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc1 A ND1 HIS 320 A HIS 320 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc2 A SG CYS 330 A CYS 330 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc3 A SG CYS 333 A CYS 333 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc4 A NE2 HIS 346 A HIS 346 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc5 A OD2 ASP 407 A ASP 407 1_555 D PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc6 A OD1 ASP 407 A ASP 407 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc7 A OD2 ASP 407 A ASP 407 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc8 A OG SER 409 A SER 409 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? 
metalc ? metalc9 C O23 IHP . A IHP 500 1_555 D PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? 
metalc ? metalc10 C O43 IHP . A IHP 500 1_555 D PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? 
metalc ? metalc11 C O43 IHP . A IHP 500 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc12 D PB PB . A PB 501 1_555 F O2B ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? 
metalc ? metalc13 D PB PB . A PB 501 1_555 F O3B ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc14 D PB PB . A PB 501 1_555 F O2A ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc15 E PB PB . A PB 502 1_555 F O2B ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc16 B ND1 HIS 320 B HIS 320 1_555 L ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc17 B SG CYS 330 B CYS 330 1_555 L ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc18 B NE2 HIS 346 B HIS 346 1_555 L ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? 
metalc ? metalc19 B OD2 ASP 407 B ASP 407 1_555 I PB PB . B PB 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc20 B OD1 ASP 407 B ASP 407 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc21 B OD2 ASP 407 B ASP 407 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc22 B OG SER 409 B SER 409 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc23 H O23 IHP . B IHP 500 1_555 I PB PB . B PB 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc24 H O43 IHP . B IHP 500 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc25 I PB PB . B PB 503 1_555 K O1B ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc26 I PB PB . B PB 503 1_555 K O1A ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc27 J PB PB . B PB 504 1_555 K O2B ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? 
metalc ? metalc28 J PB PB . B PB 504 1_555 K O1B ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
#
_chem_comp.formula           'C6 H18 O24 P6' 
_chem_comp.formula_weight    660.035 
_chem_comp.id                IHP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'INOSITOL HEXAKISPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IHP sing 194 n n 
C1 C6 IHP sing 195 n n 
C1 O11 IHP sing 196 n n 
C1 H1 IHP sing 197 n n 
C2 C3 IHP sing 198 n n 
C2 O12 IHP sing 199 n n 
C2 H2 IHP sing 200 n n 
C3 C4 IHP sing 201 n n 
C3 O13 IHP sing 202 n n 
C3 H3 IHP sing 203 n n 
C4 C5 IHP sing 204 n n 
C4 O14 IHP sing 205 n n 
C4 H4 IHP sing 206 n n 
C5 C6 IHP sing 207 n n 
C5 O15 IHP sing 208 n n 
C5 H5 IHP sing 209 n n 
C6 O16 IHP sing 210 n n 
C6 H6 IHP sing 211 n n 
O11 P1 IHP sing 212 n n 
P1 O21 IHP doub 213 n n 
P1 O31 IHP sing 214 n n 
P1 O41 IHP sing 215 n n 
O31 H31 IHP sing 216 n n 
O41 H41 IHP sing 217 n n 
O12 P2 IHP sing 218 n n 
P2 O22 IHP doub 219 n n 
P2 O32 IHP sing 220 n n 
P2 O42 IHP sing 221 n n 
O32 H32 IHP sing 222 n n 
O42 H42 IHP sing 223 n n 
O13 P3 IHP sing 224 n n 
P3 O23 IHP doub 225 n n 
P3 O33 IHP sing 226 n n 
P3 O43 IHP sing 227 n n 
O33 H33 IHP sing 228 n n 
O43 H43 IHP sing 229 n n 
O14 P4 IHP sing 230 n n 
P4 O24 IHP doub 231 n n 
P4 O34 IHP sing 232 n n 
P4 O44 IHP sing 233 n n 
O34 H34 IHP sing 234 n n 
O44 H44 IHP sing 235 n n 
O15 P5 IHP sing 236 n n 
P5 O25 IHP doub 237 n n 
P5 O35 IHP sing 238 n n 
P5 O45 IHP sing 239 n n 
O35 H35 IHP sing 240 n n 
O45 H45 IHP sing 241 n n 
O16 P6 IHP sing 242 n n 
P6 O26 IHP doub 243 n n 
P6 O36 IHP sing 244 n n 
P6 O46 IHP sing 245 n n 
O36 H36 IHP sing 246 n n 
O46 H46 IHP sing 247 n n 
#
_atom_sites.entry_id                     2XAL 
_atom_sites.fract_transf_matrix[1][1]    0.017223 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009011 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00721 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IHP A 1 500 500 IHP I6P . 
D 3 PB A 1 501 501 PB PB . 
E 3 PB A 1 502 502 PB PB . 
F 4 ADP A 1 600 600 ADP ADP . 
G 5 ZN A 1 700 700 ZN ZN . 
H 2 IHP B 1 500 500 IHP I6P . 
I 3 PB B 1 503 503 PB PB . 
J 3 PB B 1 504 504 PB PB . 
K 4 ADP B 1 600 600 ADP ADP . 
L 5 ZN B 1 700 700 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IHP . . . H 2 66.698 55.753 64.11 1 14.41 ? C1 IHP 500 B 1 
HETATM 2 C C2 IHP . . . H 2 67.815 55.437 65.048 1 15.13 ? C2 IHP 500 B 1 
HETATM 3 C C3 IHP . . . H 2 68.126 53.973 65.201 1 14.09 ? C3 IHP 500 B 1 
HETATM 4 C C4 IHP . . . H 2 68.507 53.482 63.837 1 13.94 ? C4 IHP 500 B 1 
HETATM 5 C C5 IHP . . . H 2 67.369 53.736 62.89 1 13.03 ? C5 IHP 500 B 1 
HETATM 6 C C6 IHP . . . H 2 67.048 55.198 62.774 1 13.77 ? C6 IHP 500 B 1 
HETATM 7 O O11 IHP . . . H 2 66.745 57.169 64.001 1 15.07 ? O11 IHP 500 B 1 
HETATM 8 P P1 IHP . . . H 2 65.461 58.103 64.23 1 13.69 ? P1 IHP 500 B 1 
HETATM 9 O O21 IHP . . . H 2 65.003 58.277 62.82 1 15.14 ? O21 IHP 500 B 1 
HETATM 10 O O31 IHP . . . H 2 64.51 57.271 65.047 1 13.26 ? O31 IHP 500 B 1 
HETATM 11 O O41 IHP . . . H 2 66.022 59.362 64.855 1 12.95 ? O41 IHP 500 B 1 
HETATM 12 O O12 IHP . . . H 2 67.356 55.946 66.26 1 17.19 ? O12 IHP 500 B 1 
HETATM 13 P P2 IHP . . . H 2 68.483 56.197 67.342 1 18.49 ? P2 IHP 500 B 1 
HETATM 14 O O22 IHP . . . H 2 69.239 54.874 67.259 1 16.81 ? O22 IHP 500 B 1 
HETATM 15 O O32 IHP . . . H 2 69.301 57.388 66.888 1 18.56 ? O32 IHP 500 B 1 
HETATM 16 O O42 IHP . . . H 2 67.569 56.504 68.526 1 18.86 ? O42 IHP 500 B 1 
HETATM 17 O O13 IHP . . . H 2 67.011 53.244 65.697 1 13.08 ? O13 IHP 500 B 1 
HETATM 18 P P3 IHP . . . H 2 67.119 52.673 67.198 1 12.69 ? P3 IHP 500 B 1 
HETATM 19 O O23 IHP . . . H 2 66.511 51.308 67.214 1 12.88 ? O23 IHP 500 B 1 
HETATM 20 O O33 IHP . . . H 2 68.596 52.659 67.465 1 13.48 ? O33 IHP 500 B 1 
HETATM 21 O O43 IHP . . . H 2 66.323 53.671 68.002 1 15.05 ? O43 IHP 500 B 1 
HETATM 22 O O14 IHP . . . H 2 68.688 52.087 63.957 1 15.68 ? O14 IHP 500 B 1 
HETATM 23 P P4 IHP . . . H 2 69.906 51.35 63.217 1 16.48 ? P4 IHP 500 B 1 
HETATM 24 O O24 IHP . . . H 2 70.996 51.29 64.27 1 15.12 ? O24 IHP 500 B 1 
HETATM 25 O O34 IHP . . . H 2 70.194 52.212 62.014 1 15.88 ? O34 IHP 500 B 1 
HETATM 26 O O44 IHP . . . H 2 69.253 50.021 62.866 1 18.22 ? O44 IHP 500 B 1 
HETATM 27 O O15 IHP . . . H 2 67.794 53.325 61.617 1 12.52 ? O15 IHP 500 B 1 
HETATM 28 P P5 IHP . . . H 2 66.734 52.526 60.732 1 13.15 ? P5 IHP 500 B 1 
HETATM 29 O O25 IHP . . . H 2 66.767 53.298 59.427 1 11.06 ? O25 IHP 500 B 1 
HETATM 30 O O35 IHP . . . H 2 67.252 51.098 60.748 1 12.86 ? O35 IHP 500 B 1 
HETATM 31 O O45 IHP . . . H 2 65.467 52.661 61.539 1 13.25 ? O45 IHP 500 B 1 
HETATM 32 O O16 IHP . . . H 2 65.856 55.341 62.043 1 14.71 ? O16 IHP 500 B 1 
HETATM 33 P P6 IHP . . . H 2 65.783 56.143 60.651 1 15.01 ? P6 IHP 500 B 1 
HETATM 34 O O26 IHP . . . H 2 64.484 55.608 60.085 1 14.99 ? O26 IHP 500 B 1 
HETATM 35 O O36 IHP . . . H 2 65.748 57.594 61.019 1 13.93 ? O36 IHP 500 B 1 
HETATM 36 O O46 IHP . . . H 2 67.036 55.742 59.9 1 15.46 ? O46 IHP 500 B 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           36 
#