data_2XAL # _model_server_result.job_id 1BTQWCCyUsKU3g8XSZgl6g _model_server_result.datetime_utc '2024-11-23 12:16:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 2XAL # _exptl.entry_id 2XAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.2 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LEAD (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XAL _cell.length_a 58.063 _cell.length_b 110.971 _cell.length_c 138.694 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 330 B CYS 330 1_555 B SG CYS 333 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc1 A ND1 HIS 320 A HIS 320 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc2 A SG CYS 330 A CYS 330 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc3 A SG CYS 333 A CYS 333 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 A NE2 HIS 346 A HIS 346 1_555 G ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 A OD2 ASP 407 A ASP 407 1_555 D PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 A OD1 ASP 407 A ASP 407 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc7 A OD2 ASP 407 A ASP 407 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc8 A OG SER 409 A SER 409 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc9 C O23 IHP . A IHP 500 1_555 D PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc10 C O43 IHP . A IHP 500 1_555 D PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc11 C O43 IHP . A IHP 500 1_555 E PB PB . A PB 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc12 D PB PB . A PB 501 1_555 F O2B ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? metalc ? metalc13 D PB PB . A PB 501 1_555 F O3B ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc14 D PB PB . A PB 501 1_555 F O2A ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc15 E PB PB . A PB 502 1_555 F O2B ADP . A ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc16 B ND1 HIS 320 B HIS 320 1_555 L ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc17 B SG CYS 330 B CYS 330 1_555 L ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc18 B NE2 HIS 346 B HIS 346 1_555 L ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? metalc ? metalc19 B OD2 ASP 407 B ASP 407 1_555 I PB PB . B PB 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc20 B OD1 ASP 407 B ASP 407 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc21 B OD2 ASP 407 B ASP 407 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc22 B OG SER 409 B SER 409 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc23 H O23 IHP . B IHP 500 1_555 I PB PB . B PB 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc24 H O43 IHP . B IHP 500 1_555 J PB PB . B PB 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc25 I PB PB . B PB 503 1_555 K O1B ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc26 I PB PB . B PB 503 1_555 K O1A ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc27 J PB PB . B PB 504 1_555 K O2B ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc28 J PB PB . B PB 504 1_555 K O1B ADP . B ADP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'Pb 2' _chem_comp.formula_weight 207.2 _chem_comp.id PB _chem_comp.mon_nstd_flag . _chem_comp.name 'LEAD (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2XAL _atom_sites.fract_transf_matrix[1][1] 0.017223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHP A 1 500 500 IHP I6P . D 3 PB A 1 501 501 PB PB . E 3 PB A 1 502 502 PB PB . F 4 ADP A 1 600 600 ADP ADP . G 5 ZN A 1 700 700 ZN ZN . H 2 IHP B 1 500 500 IHP I6P . I 3 PB B 1 503 503 PB PB . J 3 PB B 1 504 504 PB PB . K 4 ADP B 1 600 600 ADP ADP . L 5 ZN B 1 700 700 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PB _atom_site.label_atom_id PB _atom_site.label_comp_id PB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 37.326 _atom_site.Cartn_y 68.482 _atom_site.Cartn_z 40.069 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PB _atom_site.auth_comp_id PB _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #