data_2XAO # _model_server_result.job_id ZmAS20CXURrKRhCb55fHjQ _model_server_result.datetime_utc '2024-11-13 04:44:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2XAO # _exptl.entry_id 2XAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.055 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MYO-INOSITOL-(1,3,4,5,6)-PENTAKISPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XAO _cell.length_a 58.761 _cell.length_b 112.737 _cell.length_c 144.454 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 320 A HIS 320 1_555 D ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc2 A SG CYS 330 A CYS 330 1_555 D ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc3 A SG CYS 333 A CYS 333 1_555 D ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 A NE2 HIS 346 A HIS 346 1_555 D ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 B ND1 HIS 320 B HIS 320 1_555 F ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc6 B SG CYS 330 B CYS 330 1_555 F ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc7 B SG CYS 333 B CYS 333 1_555 F ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc8 B NE2 HIS 346 B HIS 346 1_555 F ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C6 H17 O21 P5' _chem_comp.formula_weight 580.055 _chem_comp.id 5MY _chem_comp.mon_nstd_flag . _chem_comp.name MYO-INOSITOL-(1,3,4,5,6)-PENTAKISPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 P1 5MY sing 1 n n P1 O21 5MY sing 2 n n P1 O41 5MY doub 3 n n P1 O11 5MY sing 4 n n O11 C1 5MY sing 5 n n C1 C2 5MY sing 6 n n C1 C6 5MY sing 7 n n C2 O12 5MY sing 8 n n C2 C3 5MY sing 9 n n C3 O13 5MY sing 10 n n C3 C4 5MY sing 11 n n O13 P3 5MY sing 12 n n P3 O23 5MY sing 13 n n P3 O33 5MY doub 14 n n P3 O43 5MY sing 15 n n C6 O16 5MY sing 16 n n C6 C5 5MY sing 17 n n O16 P6 5MY sing 18 n n P6 O26 5MY sing 19 n n P6 O36 5MY doub 20 n n P6 O46 5MY sing 21 n n C5 O15 5MY sing 22 n n C5 C4 5MY sing 23 n n O15 P5 5MY sing 24 n n P5 O25 5MY sing 25 n n P5 O35 5MY doub 26 n n P5 O45 5MY sing 27 n n C4 O14 5MY sing 28 n n O14 P4 5MY sing 29 n n P4 O34 5MY doub 30 n n P4 O44 5MY sing 31 n n P4 O24 5MY sing 32 n n O31 H31 5MY sing 33 n n O21 H21 5MY sing 34 n n C1 H1 5MY sing 35 n n C2 H2 5MY sing 36 n n C6 H6 5MY sing 37 n n O12 H12 5MY sing 38 n n C3 H3 5MY sing 39 n n C4 H4 5MY sing 40 n n O23 H23 5MY sing 41 n n O43 H43 5MY sing 42 n n C5 H5 5MY sing 43 n n O26 H26 5MY sing 44 n n O46 H46 5MY sing 45 n n O25 H25 5MY sing 46 n n O45 H45 5MY sing 47 n n O44 H44 5MY sing 48 n n O24 H24 5MY sing 49 n n # _atom_sites.entry_id 2XAO _atom_sites.fract_transf_matrix[1][1] 0.017018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5MY A 1 500 500 5MY 5MY . D 3 ZN A 1 700 700 ZN ZN . E 2 5MY B 1 500 500 5MY 5MY . F 3 ZN B 1 700 700 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O31 5MY . . . C 2 43.013 73.832 47.954 1 24.15 ? O31 5MY 500 A 1 HETATM 2 P P1 5MY . . . C 2 43.112 72.535 48.732 1 23.66 ? P1 5MY 500 A 1 HETATM 3 O O21 5MY . . . C 2 44.104 71.51 48.228 1 22.42 ? O21 5MY 500 A 1 HETATM 4 O O41 5MY . . . C 2 43.105 72.737 50.229 1 22.82 ? O41 5MY 500 A 1 HETATM 5 O O11 5MY . . . C 2 41.711 71.84 48.381 1 23.53 ? O11 5MY 500 A 1 HETATM 6 C C1 5MY . . . C 2 41.591 70.44 48.56 1 22.43 ? C1 5MY 500 A 1 HETATM 7 C C2 5MY . . . C 2 41.336 69.803 47.201 1 22.77 ? C2 5MY 500 A 1 HETATM 8 O O12 5MY . . . C 2 40.275 70.501 46.53 1 21.92 ? O12 5MY 500 A 1 HETATM 9 C C3 5MY . . . C 2 41.047 68.302 47.362 1 23.49 ? C3 5MY 500 A 1 HETATM 10 O O13 5MY . . . C 2 40.62 67.716 46.135 1 26.23 ? O13 5MY 500 A 1 HETATM 11 P P3 5MY . . . C 2 41.633 67.429 44.908 1 28.8 ? P3 5MY 500 A 1 HETATM 12 O O23 5MY . . . C 2 40.828 66.433 44.083 1 26.92 ? O23 5MY 500 A 1 HETATM 13 O O33 5MY . . . C 2 42.902 66.863 45.521 1 27.94 ? O33 5MY 500 A 1 HETATM 14 O O43 5MY . . . C 2 41.851 68.787 44.271 1 26.94 ? O43 5MY 500 A 1 HETATM 15 C C6 5MY . . . C 2 40.482 70.175 49.574 1 21.41 ? C6 5MY 500 A 1 HETATM 16 O O16 5MY . . . C 2 40.828 70.661 50.875 1 20.5 ? O16 5MY 500 A 1 HETATM 17 P P6 5MY . . . C 2 39.947 71.767 51.654 1 18.75 ? P6 5MY 500 A 1 HETATM 18 O O26 5MY . . . C 2 38.827 72.163 50.717 1 19.36 ? O26 5MY 500 A 1 HETATM 19 O O36 5MY . . . C 2 40.933 72.878 51.928 1 16.75 ? O36 5MY 500 A 1 HETATM 20 O O46 5MY . . . C 2 39.481 71.031 52.879 1 17.91 ? O46 5MY 500 A 1 HETATM 21 C C5 5MY . . . C 2 40.209 68.699 49.731 1 20.6 ? C5 5MY 500 A 1 HETATM 22 O O15 5MY . . . C 2 39.005 68.673 50.472 1 18.34 ? O15 5MY 500 A 1 HETATM 23 P P5 5MY . . . C 2 38.869 67.934 51.883 1 15.77 ? P5 5MY 500 A 1 HETATM 24 O O25 5MY . . . C 2 39.834 68.646 52.817 1 13.42 ? O25 5MY 500 A 1 HETATM 25 O O35 5MY . . . C 2 39.256 66.506 51.592 1 13.34 ? O35 5MY 500 A 1 HETATM 26 O O45 5MY . . . C 2 37.393 68.149 52.141 1 14.09 ? O45 5MY 500 A 1 HETATM 27 C C4 5MY . . . C 2 39.972 67.998 48.401 1 22.1 ? C4 5MY 500 A 1 HETATM 28 O O14 5MY . . . C 2 40.022 66.604 48.649 1 22.33 ? O14 5MY 500 A 1 HETATM 29 P P4 5MY . . . C 2 38.776 65.619 48.476 1 21.72 ? P4 5MY 500 A 1 HETATM 30 O O34 5MY . . . C 2 38.304 65.359 49.873 1 22.31 ? O34 5MY 500 A 1 HETATM 31 O O44 5MY . . . C 2 37.776 66.381 47.652 1 21.39 ? O44 5MY 500 A 1 HETATM 32 O O24 5MY . . . C 2 39.423 64.419 47.82 1 21.86 ? O24 5MY 500 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #