data_2XAR # _model_server_result.job_id VsitVgP5F5B9MAiLfLw1sA _model_server_result.datetime_utc '2024-11-17 05:27:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xar # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2XAR # _exptl.entry_id 2XAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XAR _cell.length_a 57.67 _cell.length_b 112.501 _cell.length_c 139.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 320 A HIS 320 1_555 D ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 A SG CYS 330 A CYS 330 1_555 D ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A SG CYS 333 A CYS 333 1_555 D ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc4 A NE2 HIS 346 A HIS 346 1_555 D ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc5 B ND1 HIS 320 B HIS 320 1_555 F ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 B SG CYS 330 B CYS 330 1_555 F ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc7 B SG CYS 333 B CYS 333 1_555 F ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc8 B NE2 HIS 346 B HIS 346 1_555 F ZN ZN . B ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 150 n n C1 C6 IHP sing 151 n n C1 O11 IHP sing 152 n n C1 H1 IHP sing 153 n n C2 C3 IHP sing 154 n n C2 O12 IHP sing 155 n n C2 H2 IHP sing 156 n n C3 C4 IHP sing 157 n n C3 O13 IHP sing 158 n n C3 H3 IHP sing 159 n n C4 C5 IHP sing 160 n n C4 O14 IHP sing 161 n n C4 H4 IHP sing 162 n n C5 C6 IHP sing 163 n n C5 O15 IHP sing 164 n n C5 H5 IHP sing 165 n n C6 O16 IHP sing 166 n n C6 H6 IHP sing 167 n n O11 P1 IHP sing 168 n n P1 O21 IHP doub 169 n n P1 O31 IHP sing 170 n n P1 O41 IHP sing 171 n n O31 H31 IHP sing 172 n n O41 H41 IHP sing 173 n n O12 P2 IHP sing 174 n n P2 O22 IHP doub 175 n n P2 O32 IHP sing 176 n n P2 O42 IHP sing 177 n n O32 H32 IHP sing 178 n n O42 H42 IHP sing 179 n n O13 P3 IHP sing 180 n n P3 O23 IHP doub 181 n n P3 O33 IHP sing 182 n n P3 O43 IHP sing 183 n n O33 H33 IHP sing 184 n n O43 H43 IHP sing 185 n n O14 P4 IHP sing 186 n n P4 O24 IHP doub 187 n n P4 O34 IHP sing 188 n n P4 O44 IHP sing 189 n n O34 H34 IHP sing 190 n n O44 H44 IHP sing 191 n n O15 P5 IHP sing 192 n n P5 O25 IHP doub 193 n n P5 O35 IHP sing 194 n n P5 O45 IHP sing 195 n n O35 H35 IHP sing 196 n n O45 H45 IHP sing 197 n n O16 P6 IHP sing 198 n n P6 O26 IHP doub 199 n n P6 O36 IHP sing 200 n n P6 O46 IHP sing 201 n n O36 H36 IHP sing 202 n n O46 H46 IHP sing 203 n n # _atom_sites.entry_id 2XAR _atom_sites.fract_transf_matrix[1][1] 0.01734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHP A 1 500 500 IHP I6P . D 3 ZN A 1 700 700 ZN ZN . E 2 IHP B 1 500 500 IHP I6P . F 3 ZN B 1 700 700 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . C 2 37.79 67.991 46.651 1 36.21 ? C1 IHP 500 A 1 HETATM 2 C C2 IHP . . . C 2 39.019 68.234 45.779 1 37.56 ? C2 IHP 500 A 1 HETATM 3 C C3 IHP . . . C 2 39.287 69.73 45.694 1 37.62 ? C3 IHP 500 A 1 HETATM 4 C C4 IHP . . . C 2 39.484 70.381 47.057 1 36 ? C4 IHP 500 A 1 HETATM 5 C C5 IHP . . . C 2 38.281 70.143 47.935 1 35.02 ? C5 IHP 500 A 1 HETATM 6 C C6 IHP . . . C 2 37.917 68.675 48.004 1 35.03 ? C6 IHP 500 A 1 HETATM 7 O O11 IHP . . . C 2 37.634 66.604 46.913 1 36.86 ? O11 IHP 500 A 1 HETATM 8 P P1 IHP . . . C 2 36.386 65.779 46.331 1 36.78 ? P1 IHP 500 A 1 HETATM 9 O O21 IHP . . . C 2 37.013 64.48 45.864 1 35.99 ? O21 IHP 500 A 1 HETATM 10 O O31 IHP . . . C 2 35.454 65.611 47.5 1 36.94 ? O31 IHP 500 A 1 HETATM 11 O O41 IHP . . . C 2 35.871 66.694 45.245 1 36.53 ? O41 IHP 500 A 1 HETATM 12 O O12 IHP . . . C 2 38.812 67.749 44.449 1 38.77 ? O12 IHP 500 A 1 HETATM 13 P P2 IHP . . . C 2 40.038 67.42 43.44 1 39.91 ? P2 IHP 500 A 1 HETATM 14 O O22 IHP . . . C 2 39.443 66.366 42.535 1 39.14 ? O22 IHP 500 A 1 HETATM 15 O O32 IHP . . . C 2 41.151 66.939 44.359 1 39.15 ? O32 IHP 500 A 1 HETATM 16 O O42 IHP . . . C 2 40.362 68.693 42.688 1 38.76 ? O42 IHP 500 A 1 HETATM 17 O O13 IHP . . . C 2 38.185 70.35 45.032 1 38.85 ? O13 IHP 500 A 1 HETATM 18 P P3 IHP . . . C 2 38.414 71.02 43.593 1 40.25 ? P3 IHP 500 A 1 HETATM 19 O O23 IHP . . . C 2 37.701 72.34 43.754 1 40.42 ? O23 IHP 500 A 1 HETATM 20 O O33 IHP . . . C 2 39.913 71.154 43.435 1 39.68 ? O33 IHP 500 A 1 HETATM 21 O O43 IHP . . . C 2 37.789 70.035 42.63 1 39.93 ? O43 IHP 500 A 1 HETATM 22 O O14 IHP . . . C 2 39.515 71.781 46.881 1 35.52 ? O14 IHP 500 A 1 HETATM 23 P P4 IHP . . . C 2 40.858 72.643 46.753 1 34.83 ? P4 IHP 500 A 1 HETATM 24 O O24 IHP . . . C 2 40.306 73.732 45.857 1 34.14 ? O24 IHP 500 A 1 HETATM 25 O O34 IHP . . . C 2 41.118 73.046 48.178 1 33.95 ? O34 IHP 500 A 1 HETATM 26 O O44 IHP . . . C 2 41.929 71.748 46.148 1 34.13 ? O44 IHP 500 A 1 HETATM 27 O O15 IHP . . . C 2 38.54 70.651 49.239 1 34.56 ? O15 IHP 500 A 1 HETATM 28 P P5 IHP . . . C 2 37.662 71.877 49.803 1 35.65 ? P5 IHP 500 A 1 HETATM 29 O O25 IHP . . . C 2 36.48 72.003 48.857 1 35.41 ? O25 IHP 500 A 1 HETATM 30 O O35 IHP . . . C 2 38.586 73.081 49.788 1 33.7 ? O35 IHP 500 A 1 HETATM 31 O O45 IHP . . . C 2 37.257 71.399 51.177 1 35.47 ? O45 IHP 500 A 1 HETATM 32 O O16 IHP . . . C 2 36.642 68.643 48.594 1 33.55 ? O16 IHP 500 A 1 HETATM 33 P P6 IHP . . . C 2 36.444 67.887 49.977 1 32.29 ? P6 IHP 500 A 1 HETATM 34 O O26 IHP . . . C 2 37.228 68.717 50.965 1 32.73 ? O26 IHP 500 A 1 HETATM 35 O O36 IHP . . . C 2 37.031 66.513 49.702 1 31.57 ? O36 IHP 500 A 1 HETATM 36 O O46 IHP . . . C 2 34.949 67.97 50.163 1 30.79 ? O46 IHP 500 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #