data_2XAS # _model_server_result.job_id EL7hNxaMaFqLDDMue6j-2Q _model_server_result.datetime_utc '2024-11-08 02:59:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 2XAS # _exptl.entry_id 2XAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.495 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[4-({N-[(BENZYLOXY)CARBONYL]-L-PHENYLALANYL}AMINO)PHENYL]PROPANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XAS _cell.length_a 118.317 _cell.length_b 179.693 _cell.length_c 235.257 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id N5 _struct_conn.ptnr1_label_comp_id FAD _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id FAD _struct_conn.ptnr1_auth_seq_id 900 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C1B _struct_conn.ptnr2_label_comp_id M80 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id M80 _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.462 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H26 N2 O5' _chem_comp.formula_weight 446.495 _chem_comp.id M80 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[4-({N-[(BENZYLOXY)CARBONYL]-L-PHENYLALANYL}AMINO)PHENYL]PROPANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B O1B M80 doub 307 n n C1B C2B M80 sing 308 n n C1B OXT M80 sing 309 n n C2B C3B M80 sing 310 n n C3B CB1 M80 sing 311 n n CB1 CB6 M80 sing 312 n y CB1 CB2 M80 doub 313 n y CB6 CB5 M80 doub 314 n y CB5 CB4 M80 sing 315 n y CB2 CB3 M80 sing 316 n y CB3 CB4 M80 doub 317 n y CB4 NB4 M80 sing 318 n n NB4 C4B M80 sing 319 n n C4B O4B M80 doub 320 n n C4B CW M80 sing 321 n n CW CW1 M80 sing 322 n n CW NW M80 sing 323 n n CW1 CW2 M80 sing 324 n n CW2 CW3 M80 sing 325 n y CW2 CW7 M80 doub 326 n y CW3 CW4 M80 doub 327 n y CW4 CW5 M80 sing 328 n y CW5 CW6 M80 doub 329 n y CW6 CW7 M80 sing 330 n y NW CY M80 sing 331 n n CY OY1 M80 doub 332 n n CY OY2 M80 sing 333 n n OY2 CZ M80 sing 334 n n CZ CZ1 M80 sing 335 n n CZ1 CZ2 M80 sing 336 n y CZ1 CZ6 M80 doub 337 n y CZ2 CZ3 M80 doub 338 n y CZ3 CZ4 M80 sing 339 n y CZ4 CZ5 M80 doub 340 n y CZ5 CZ6 M80 sing 341 n y C2B H2B1 M80 sing 342 n n C2B H2B2 M80 sing 343 n n OXT HXT M80 sing 344 n n C3B H3B1 M80 sing 345 n n C3B H3B2 M80 sing 346 n n CB6 HB6 M80 sing 347 n n CB2 HB2 M80 sing 348 n n CB5 HB5 M80 sing 349 n n CB3 HB3 M80 sing 350 n n NB4 HB4 M80 sing 351 n n CW HW M80 sing 352 n n CW1 HW11 M80 sing 353 n n CW1 HW12 M80 sing 354 n n NW HA M80 sing 355 n n CW3 HW3 M80 sing 356 n n CW7 HW7 M80 sing 357 n n CW4 HW4 M80 sing 358 n n CW5 HW5 M80 sing 359 n n CW6 HW6 M80 sing 360 n n CZ HZ1C M80 sing 361 n n CZ HZ2C M80 sing 362 n n CZ2 HZ2 M80 sing 363 n n CZ6 HZ6 M80 sing 364 n n CZ3 HZ3 M80 sing 365 n n CZ4 HZ4 M80 sing 366 n n CZ5 HZ5 M80 sing 367 n n # _atom_sites.entry_id 2XAS _atom_sites.fract_transf_matrix[1][1] 0.008452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 900 900 FAD FAD . D 4 M80 A 1 901 901 M80 M80 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B M80 . . . D 4 -7.888 57.29 81.276 1 66.07 ? C1B M80 901 A 1 HETATM 2 O O1B M80 . . . D 4 -8.465 57.255 80.184 1 66.51 ? O1B M80 901 A 1 HETATM 3 C C2B M80 . . . D 4 -6.923 56.204 81.7 1 68.52 ? C2B M80 901 A 1 HETATM 4 C C3B M80 . . . D 4 -6.048 56.643 82.856 1 73.2 ? C3B M80 901 A 1 HETATM 5 C CB1 M80 . . . D 4 -6.062 55.531 83.873 1 78.13 ? CB1 M80 901 A 1 HETATM 6 C CB6 M80 . . . D 4 -7.266 54.923 84.214 1 79.88 ? CB6 M80 901 A 1 HETATM 7 C CB5 M80 . . . D 4 -7.289 53.888 85.145 1 83.38 ? CB5 M80 901 A 1 HETATM 8 C CB2 M80 . . . D 4 -4.867 55.095 84.456 1 80.52 ? CB2 M80 901 A 1 HETATM 9 C CB3 M80 . . . D 4 -4.889 54.058 85.385 1 83.66 ? CB3 M80 901 A 1 HETATM 10 C CB4 M80 . . . D 4 -6.109 53.449 85.753 1 86.64 ? CB4 M80 901 A 1 HETATM 11 N NB4 M80 . . . D 4 -6.173 52.365 86.681 1 92.23 ? NB4 M80 901 A 1 HETATM 12 C C4B M80 . . . D 4 -5.073 51.864 87.278 1 97.96 ? C4B M80 901 A 1 HETATM 13 O O4B M80 . . . D 4 -3.941 52.334 87.087 1 99.14 ? O4B M80 901 A 1 HETATM 14 C CW M80 . . . D 4 -5.222 50.676 88.205 1 100.89 ? CW M80 901 A 1 HETATM 15 C CW1 M80 . . . D 4 -3.802 50.087 88.322 1 102.73 ? CW1 M80 901 A 1 HETATM 16 C CW2 M80 . . . D 4 -3.615 48.662 88.807 1 103.47 ? CW2 M80 901 A 1 HETATM 17 C CW3 M80 . . . D 4 -3.162 47.686 87.913 1 104.29 ? CW3 M80 901 A 1 HETATM 18 C CW4 M80 . . . D 4 -2.964 46.374 88.349 1 104.3 ? CW4 M80 901 A 1 HETATM 19 C CW5 M80 . . . D 4 -3.195 46.052 89.685 1 103.61 ? CW5 M80 901 A 1 HETATM 20 C CW6 M80 . . . D 4 -3.627 47.028 90.578 1 103.07 ? CW6 M80 901 A 1 HETATM 21 C CW7 M80 . . . D 4 -3.837 48.333 90.144 1 103.28 ? CW7 M80 901 A 1 HETATM 22 N NW M80 . . . D 4 -6.09 49.626 87.671 1 103.74 ? NW M80 901 A 1 HETATM 23 C CY M80 . . . D 4 -5.908 48.931 86.515 1 106.37 ? CY M80 901 A 1 HETATM 24 O OY1 M80 . . . D 4 -6.738 48.067 86.213 1 108.29 ? OY1 M80 901 A 1 HETATM 25 O OY2 M80 . . . D 4 -4.737 49.159 85.61 1 105.96 ? OY2 M80 901 A 1 HETATM 26 C CZ M80 . . . D 4 -4.688 48.87 84.19 1 104.04 ? CZ M80 901 A 1 HETATM 27 C CZ1 M80 . . . D 4 -5.323 49.93 83.28 1 102.76 ? CZ1 M80 901 A 1 HETATM 28 C CZ2 M80 . . . D 4 -6.66 49.794 82.854 1 102.12 ? CZ2 M80 901 A 1 HETATM 29 C CZ3 M80 . . . D 4 -7.262 50.745 82.019 1 101.06 ? CZ3 M80 901 A 1 HETATM 30 C CZ4 M80 . . . D 4 -6.509 51.848 81.607 1 101.17 ? CZ4 M80 901 A 1 HETATM 31 C CZ5 M80 . . . D 4 -5.174 51.994 82.016 1 100.84 ? CZ5 M80 901 A 1 HETATM 32 C CZ6 M80 . . . D 4 -4.579 51.041 82.848 1 101.39 ? CZ6 M80 901 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #