data_2XAT # _model_server_result.job_id UJQb9MgBBzatfOWjmC45Tg _model_server_result.datetime_utc '2024-10-15 06:13:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 2XAT # _exptl.entry_id 2XAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 735.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DESULFO-COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XAT _cell.length_a 154.8 _cell.length_b 154.8 _cell.length_c 154.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3' _chem_comp.formula_weight 735.469 _chem_comp.id DCA _chem_comp.mon_nstd_flag . _chem_comp.name 'DESULFO-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A DCA sing 115 n y N1A C6A DCA doub 116 n y C2A N3A DCA doub 117 n y C2A H2A DCA sing 118 n n N3A C4A DCA sing 119 n y C4A C5A DCA doub 120 n y C4A N9A DCA sing 121 n y C5A C6A DCA sing 122 n y C5A N7A DCA sing 123 n y C6A N6A DCA sing 124 n n N6A H61A DCA sing 125 n n N6A H62A DCA sing 126 n n N7A C8A DCA doub 127 n y C8A N9A DCA sing 128 n y C8A H8A DCA sing 129 n n N9A C1B DCA sing 130 n n C1B C2B DCA sing 131 n n C1B O4B DCA sing 132 n n C1B H1B DCA sing 133 n n C2B O2B DCA sing 134 n n C2B C3B DCA sing 135 n n C2B H2B DCA sing 136 n n O2B HO2A DCA sing 137 n n C3B O3B DCA sing 138 n n C3B C4B DCA sing 139 n n C3B H3B DCA sing 140 n n O3B P3B DCA sing 141 n n P3B O7A DCA doub 142 n n P3B O8A DCA sing 143 n n P3B O9A DCA sing 144 n n O8A HOA8 DCA sing 145 n n O9A HOA9 DCA sing 146 n n C4B O4B DCA sing 147 n n C4B C5B DCA sing 148 n n C4B H4B DCA sing 149 n n C5B O5B DCA sing 150 n n C5B H51A DCA sing 151 n n C5B H52A DCA sing 152 n n O5B P1A DCA sing 153 n n P1A O1A DCA doub 154 n n P1A O2A DCA sing 155 n n P1A O3A DCA sing 156 n n O2A HOA2 DCA sing 157 n n O3A P2A DCA sing 158 n n P2A O4A DCA doub 159 n n P2A O5A DCA sing 160 n n P2A O6A DCA sing 161 n n O5A HOA5 DCA sing 162 n n O6A CCP DCA sing 163 n n CBP CCP DCA sing 164 n n CBP CDP DCA sing 165 n n CBP CEP DCA sing 166 n n CBP CAP DCA sing 167 n n CCP H121 DCA sing 168 n n CCP H122 DCA sing 169 n n CDP H131 DCA sing 170 n n CDP H132 DCA sing 171 n n CDP H133 DCA sing 172 n n CEP H141 DCA sing 173 n n CEP H142 DCA sing 174 n n CEP H143 DCA sing 175 n n CAP OAP DCA sing 176 n n CAP C9P DCA sing 177 n n CAP H10 DCA sing 178 n n OAP HO1 DCA sing 179 n n C9P O9P DCA doub 180 n n C9P N8P DCA sing 181 n n N8P C7P DCA sing 182 n n N8P HN8 DCA sing 183 n n C7P C6P DCA sing 184 n n C7P H71 DCA sing 185 n n C7P H72 DCA sing 186 n n C6P C5P DCA sing 187 n n C6P H61 DCA sing 188 n n C6P H62 DCA sing 189 n n C5P O5P DCA doub 190 n n C5P N4P DCA sing 191 n n N4P C3P DCA sing 192 n n N4P HN4 DCA sing 193 n n C3P C2P DCA sing 194 n n C3P H31 DCA sing 195 n n C3P H32 DCA sing 196 n n C2P H21 DCA sing 197 n n C2P H22 DCA sing 198 n n C2P H23 DCA sing 199 n n # _atom_sites.entry_id 2XAT _atom_sites.fract_transf_matrix[1][1] 0.00646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLM A 1 301 301 CLM CLM . C 3 DCA A 1 302 302 DCA DCA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A DCA . . . C 3 47.635 37.572 38.429 1 38.04 ? N1A DCA 302 A 1 HETATM 2 C C2A DCA . . . C 3 46.719 36.958 37.627 1 38.04 ? C2A DCA 302 A 1 HETATM 3 N N3A DCA . . . C 3 46.904 36.467 36.38 1 38.04 ? N3A DCA 302 A 1 HETATM 4 C C4A DCA . . . C 3 48.174 36.657 35.963 1 38.04 ? C4A DCA 302 A 1 HETATM 5 C C5A DCA . . . C 3 49.225 37.271 36.663 1 38.04 ? C5A DCA 302 A 1 HETATM 6 C C6A DCA . . . C 3 48.919 37.75 37.975 1 38.04 ? C6A DCA 302 A 1 HETATM 7 N N6A DCA . . . C 3 49.799 38.349 38.774 1 38.04 ? N6A DCA 302 A 1 HETATM 8 N N7A DCA . . . C 3 50.373 37.276 35.899 1 38.04 ? N7A DCA 302 A 1 HETATM 9 C C8A DCA . . . C 3 50.009 36.679 34.779 1 38.04 ? C8A DCA 302 A 1 HETATM 10 N N9A DCA . . . C 3 48.706 36.288 34.758 1 38.04 ? N9A DCA 302 A 1 HETATM 11 C C1B DCA . . . C 3 47.974 35.592 33.667 1 38.04 ? C1B DCA 302 A 1 HETATM 12 C C2B DCA . . . C 3 47.744 36.388 32.305 1 38.04 ? C2B DCA 302 A 1 HETATM 13 O O2B DCA . . . C 3 46.596 37.209 32.433 1 38.04 ? O2B DCA 302 A 1 HETATM 14 C C3B DCA . . . C 3 47.661 35.325 31.24 1 38.04 ? C3B DCA 302 A 1 HETATM 15 O O3B DCA . . . C 3 46.429 34.88 30.582 1 38.04 ? O3B DCA 302 A 1 HETATM 16 P P3B DCA . . . C 3 45.23 35.68 29.647 1 38.04 ? P3B DCA 302 A 1 HETATM 17 O O7A DCA . . . C 3 44.294 34.574 29.246 1 38.04 ? O7A DCA 302 A 1 HETATM 18 O O8A DCA . . . C 3 45.909 36.311 28.431 1 38.04 ? O8A DCA 302 A 1 HETATM 19 O O9A DCA . . . C 3 44.536 36.7 30.536 1 38.04 ? O9A DCA 302 A 1 HETATM 20 C C4B DCA . . . C 3 48.381 34.155 31.907 1 38.04 ? C4B DCA 302 A 1 HETATM 21 O O4B DCA . . . C 3 48.703 34.494 33.293 1 38.04 ? O4B DCA 302 A 1 HETATM 22 C C5B DCA . . . C 3 49.6 33.834 31.177 1 38.04 ? C5B DCA 302 A 1 HETATM 23 O O5B DCA . . . C 3 50.269 34.963 30.921 1 38.04 ? O5B DCA 302 A 1 HETATM 24 P P1A DCA . . . C 3 51.795 34.811 30.998 1 38.04 ? P1A DCA 302 A 1 HETATM 25 O O1A DCA . . . C 3 52.4 36.201 30.777 1 38.04 ? O1A DCA 302 A 1 HETATM 26 O O2A DCA . . . C 3 52.077 33.63 30.033 1 38.04 ? O2A DCA 302 A 1 HETATM 27 O O3A DCA . . . C 3 52.116 34.421 32.534 1 38.04 ? O3A DCA 302 A 1 HETATM 28 P P2A DCA . . . C 3 53.648 34.008 32.667 1 38.04 ? P2A DCA 302 A 1 HETATM 29 O O4A DCA . . . C 3 54.476 34.943 31.764 1 38.04 ? O4A DCA 302 A 1 HETATM 30 O O5A DCA . . . C 3 53.808 32.5 32.452 1 38.04 ? O5A DCA 302 A 1 HETATM 31 O O6A DCA . . . C 3 53.998 34.328 34.216 1 38.04 ? O6A DCA 302 A 1 HETATM 32 C CBP DCA . . . C 3 53.732 35.384 36.422 1 38.04 ? CBP DCA 302 A 1 HETATM 33 C CCP DCA . . . C 3 53.592 35.477 34.905 1 38.04 ? CCP DCA 302 A 1 HETATM 34 C CDP DCA . . . C 3 52.426 34.771 36.972 1 38.04 ? CDP DCA 302 A 1 HETATM 35 C CEP DCA . . . C 3 54.921 34.491 36.764 1 38.04 ? CEP DCA 302 A 1 HETATM 36 C CAP DCA . . . C 3 53.947 36.846 36.907 1 38.04 ? CAP DCA 302 A 1 HETATM 37 O OAP DCA . . . C 3 52.973 37.693 36.367 1 38.04 ? OAP DCA 302 A 1 HETATM 38 C C9P DCA . . . C 3 54.244 37.135 38.38 1 38.04 ? C9P DCA 302 A 1 HETATM 39 O O9P DCA . . . C 3 53.373 37.113 39.23 1 38.04 ? O9P DCA 302 A 1 HETATM 40 N N8P DCA . . . C 3 55.545 37.433 38.612 1 38.04 ? N8P DCA 302 A 1 HETATM 41 C C7P DCA . . . C 3 56.099 37.785 39.914 1 38.04 ? C7P DCA 302 A 1 HETATM 42 C C6P DCA . . . C 3 56.883 39.12 39.83 1 38.04 ? C6P DCA 302 A 1 HETATM 43 C C5P DCA . . . C 3 56.98 39.879 41.154 1 38.04 ? C5P DCA 302 A 1 HETATM 44 O O5P DCA . . . C 3 55.965 40.236 41.786 1 38.04 ? O5P DCA 302 A 1 HETATM 45 N N4P DCA . . . C 3 58.251 40.129 41.577 1 38.04 ? N4P DCA 302 A 1 HETATM 46 C C3P DCA . . . C 3 58.566 40.837 42.812 1 38.04 ? C3P DCA 302 A 1 HETATM 47 C C2P DCA . . . C 3 59.56 40.038 43.675 1 38.04 ? C2P DCA 302 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 47 #