data_2XB1 # _model_server_result.job_id Fh5hPXif6f3g3dC3p5S0Vw _model_server_result.datetime_utc '2024-11-04 18:54:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 2XB1 # _exptl.entry_id 2XB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XB1 _cell.length_a 38.75 _cell.length_b 69.73 _cell.length_c 82.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 6 A CYS 330 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A SG CYS 9 A CYS 333 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A SG CYS 22 A CYS 346 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc4 A SG CYS 26 A CYS 350 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 A ND1 HIS 31 A HIS 355 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc6 A SG CYS 34 A CYS 358 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 A SG CYS 55 A CYS 379 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc8 A SG CYS 58 A CYS 382 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc9 B SG CYS 6 C CYS 330 1_555 F ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc10 B SG CYS 9 C CYS 333 1_555 F ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc11 B SG CYS 22 C CYS 346 1_555 G ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc12 B SG CYS 26 C CYS 350 1_555 G ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc13 B ND1 HIS 31 C HIS 355 1_555 F ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc14 B SG CYS 34 C CYS 358 1_555 F ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc15 B SG CYS 55 C CYS 379 1_555 G ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc16 B SG CYS 58 C CYS 382 1_555 G ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2XB1 _atom_sites.fract_transf_matrix[1][1] 0.025806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 1390 ZN ZN . D 2 ZN A 1 402 1391 ZN ZN . E 3 GOL A 1 403 1392 GOL GOL . F 2 ZN C 1 401 1390 ZN ZN . G 2 ZN C 1 402 1391 ZN ZN . H 4 PEG C 1 403 1392 PEG PEG . I 3 GOL C 1 404 1393 GOL GOL . J 5 HOH A 1 2001 2001 HOH HOH . J 5 HOH A 2 2002 2048 HOH HOH . J 5 HOH A 3 2003 2047 HOH HOH . J 5 HOH A 4 2004 2055 HOH HOH . J 5 HOH A 5 2005 2030 HOH HOH . J 5 HOH A 6 2006 2015 HOH HOH . J 5 HOH A 7 2007 2005 HOH HOH . J 5 HOH A 8 2008 2011 HOH HOH . J 5 HOH A 9 2009 2030 HOH HOH . J 5 HOH A 10 2010 2008 HOH HOH . J 5 HOH A 11 2011 2009 HOH HOH . J 5 HOH A 12 2012 2040 HOH HOH . J 5 HOH A 13 2013 2052 HOH HOH . J 5 HOH A 14 2014 2039 HOH HOH . J 5 HOH A 15 2015 2033 HOH HOH . J 5 HOH A 16 2016 2026 HOH HOH . J 5 HOH A 17 2017 2035 HOH HOH . J 5 HOH A 18 2018 2004 HOH HOH . J 5 HOH A 19 2019 2012 HOH HOH . J 5 HOH A 20 2020 2042 HOH HOH . J 5 HOH A 21 2021 2016 HOH HOH . J 5 HOH A 22 2022 2032 HOH HOH . J 5 HOH A 23 2023 2037 HOH HOH . J 5 HOH A 24 2024 2003 HOH HOH . J 5 HOH A 25 2025 2032 HOH HOH . J 5 HOH A 26 2026 2059 HOH HOH . J 5 HOH A 27 2027 2020 HOH HOH . J 5 HOH A 28 2028 2028 HOH HOH . J 5 HOH A 29 2029 2041 HOH HOH . J 5 HOH A 30 2030 2050 HOH HOH . J 5 HOH A 31 2031 2045 HOH HOH . J 5 HOH A 32 2032 2003 HOH HOH . J 5 HOH A 33 2033 2007 HOH HOH . J 5 HOH A 34 2034 2017 HOH HOH . J 5 HOH A 35 2035 2025 HOH HOH . J 5 HOH A 36 2036 2053 HOH HOH . J 5 HOH A 37 2037 2022 HOH HOH . J 5 HOH A 38 2038 2044 HOH HOH . J 5 HOH A 39 2039 2010 HOH HOH . J 5 HOH A 40 2040 2025 HOH HOH . J 5 HOH A 41 2041 2051 HOH HOH . J 5 HOH A 42 2042 2013 HOH HOH . J 5 HOH A 43 2043 2024 HOH HOH . J 5 HOH A 44 2044 2036 HOH HOH . J 5 HOH A 45 2045 2043 HOH HOH . J 5 HOH A 46 2046 2008 HOH HOH . J 5 HOH A 47 2047 2005 HOH HOH . J 5 HOH A 48 2048 2004 HOH HOH . J 5 HOH A 49 2049 2006 HOH HOH . J 5 HOH A 50 2050 2058 HOH HOH . J 5 HOH A 51 2051 2021 HOH HOH . J 5 HOH A 52 2052 2031 HOH HOH . J 5 HOH A 53 2053 2011 HOH HOH . J 5 HOH A 54 2054 2022 HOH HOH . J 5 HOH A 55 2055 2028 HOH HOH . J 5 HOH A 56 2056 2002 HOH HOH . J 5 HOH A 57 2057 2006 HOH HOH . J 5 HOH A 58 2058 2046 HOH HOH . J 5 HOH A 59 2059 2014 HOH HOH . J 5 HOH A 60 2060 2023 HOH HOH . J 5 HOH A 61 2061 2056 HOH HOH . J 5 HOH A 62 2062 2023 HOH HOH . J 5 HOH A 63 2063 2026 HOH HOH . J 5 HOH A 64 2064 2018 HOH HOH . J 5 HOH A 65 2065 2020 HOH HOH . J 5 HOH A 66 2066 2013 HOH HOH . J 5 HOH A 67 2067 2027 HOH HOH . J 5 HOH A 68 2068 2002 HOH HOH . J 5 HOH A 69 2069 2049 HOH HOH . J 5 HOH A 70 2070 2001 HOH HOH . J 5 HOH A 71 2071 2038 HOH HOH . J 5 HOH A 72 2072 2033 HOH HOH . J 5 HOH A 73 2073 2034 HOH HOH . J 5 HOH A 74 2074 2029 HOH HOH . J 5 HOH A 75 2075 2010 HOH HOH . J 5 HOH A 76 2076 2029 HOH HOH . J 5 HOH A 77 2077 2027 HOH HOH . J 5 HOH A 78 2078 2034 HOH HOH . J 5 HOH A 79 2079 2016 HOH HOH . J 5 HOH A 80 2080 2057 HOH HOH . J 5 HOH A 81 2081 2015 HOH HOH . J 5 HOH A 82 2082 2021 HOH HOH . J 5 HOH A 83 2083 2054 HOH HOH . J 5 HOH A 84 2084 2009 HOH HOH . J 5 HOH A 85 2085 2018 HOH HOH . J 5 HOH A 86 2086 2014 HOH HOH . J 5 HOH A 87 2087 2019 HOH HOH . J 5 HOH A 88 2088 2007 HOH HOH . J 5 HOH A 89 2089 2017 HOH HOH . J 5 HOH A 90 2090 2031 HOH HOH . J 5 HOH A 91 2091 2024 HOH HOH . J 5 HOH A 92 2092 2012 HOH HOH . K 5 HOH C 1 501 2004 HOH HOH . K 5 HOH C 2 502 2062 HOH HOH . K 5 HOH C 3 503 2006 HOH HOH . K 5 HOH C 4 504 2066 HOH HOH . K 5 HOH C 5 505 2023 HOH HOH . K 5 HOH C 6 506 2008 HOH HOH . K 5 HOH C 7 507 2046 HOH HOH . K 5 HOH C 8 508 2055 HOH HOH . K 5 HOH C 9 509 2003 HOH HOH . K 5 HOH C 10 510 2015 HOH HOH . K 5 HOH C 11 511 2047 HOH HOH . K 5 HOH C 12 512 2019 HOH HOH . K 5 HOH C 13 513 2010 HOH HOH . K 5 HOH C 14 514 2013 HOH HOH . K 5 HOH C 15 515 2049 HOH HOH . K 5 HOH C 16 516 2040 HOH HOH . K 5 HOH C 17 517 2010 HOH HOH . K 5 HOH C 18 518 2037 HOH HOH . K 5 HOH C 19 519 2038 HOH HOH . K 5 HOH C 20 520 2009 HOH HOH . K 5 HOH C 21 521 2036 HOH HOH . K 5 HOH C 22 522 2002 HOH HOH . K 5 HOH C 23 523 2052 HOH HOH . K 5 HOH C 24 524 2002 HOH HOH . K 5 HOH C 25 525 2005 HOH HOH . K 5 HOH C 26 526 2031 HOH HOH . K 5 HOH C 27 527 2044 HOH HOH . K 5 HOH C 28 528 2045 HOH HOH . K 5 HOH C 29 529 2027 HOH HOH . K 5 HOH C 30 530 2024 HOH HOH . K 5 HOH C 31 531 2014 HOH HOH . K 5 HOH C 32 532 2025 HOH HOH . K 5 HOH C 33 533 2032 HOH HOH . K 5 HOH C 34 534 2058 HOH HOH . K 5 HOH C 35 535 2059 HOH HOH . K 5 HOH C 36 536 2021 HOH HOH . K 5 HOH C 37 537 2011 HOH HOH . K 5 HOH C 38 538 2050 HOH HOH . K 5 HOH C 39 539 2057 HOH HOH . K 5 HOH C 40 540 2024 HOH HOH . K 5 HOH C 41 541 2012 HOH HOH . K 5 HOH C 42 542 2051 HOH HOH . K 5 HOH C 43 543 2064 HOH HOH . K 5 HOH C 44 544 2007 HOH HOH . K 5 HOH C 45 545 2028 HOH HOH . K 5 HOH C 46 546 2016 HOH HOH . K 5 HOH C 47 547 2023 HOH HOH . K 5 HOH C 48 548 2026 HOH HOH . K 5 HOH C 49 549 2056 HOH HOH . K 5 HOH C 50 550 2004 HOH HOH . K 5 HOH C 51 551 2014 HOH HOH . K 5 HOH C 52 552 2005 HOH HOH . K 5 HOH C 53 553 2026 HOH HOH . K 5 HOH C 54 554 2042 HOH HOH . K 5 HOH C 55 555 2006 HOH HOH . K 5 HOH C 56 556 2035 HOH HOH . K 5 HOH C 57 557 2048 HOH HOH . K 5 HOH C 58 558 2020 HOH HOH . K 5 HOH C 59 559 2067 HOH HOH . K 5 HOH C 60 560 2065 HOH HOH . K 5 HOH C 61 561 2022 HOH HOH . K 5 HOH C 62 562 2013 HOH HOH . K 5 HOH C 63 563 2027 HOH HOH . K 5 HOH C 64 564 2017 HOH HOH . K 5 HOH C 65 565 2009 HOH HOH . K 5 HOH C 66 566 2030 HOH HOH . K 5 HOH C 67 567 2020 HOH HOH . K 5 HOH C 68 568 2003 HOH HOH . K 5 HOH C 69 569 2054 HOH HOH . K 5 HOH C 70 570 2028 HOH HOH . K 5 HOH C 71 571 2007 HOH HOH . K 5 HOH C 72 572 2015 HOH HOH . K 5 HOH C 73 573 2060 HOH HOH . K 5 HOH C 74 574 2033 HOH HOH . K 5 HOH C 75 575 2018 HOH HOH . K 5 HOH C 76 576 2021 HOH HOH . K 5 HOH C 77 577 2068 HOH HOH . K 5 HOH C 78 578 2041 HOH HOH . K 5 HOH C 79 579 2001 HOH HOH . K 5 HOH C 80 580 2061 HOH HOH . K 5 HOH C 81 581 2019 HOH HOH . K 5 HOH C 82 582 2039 HOH HOH . K 5 HOH C 83 583 2001 HOH HOH . K 5 HOH C 84 584 2012 HOH HOH . K 5 HOH C 85 585 2018 HOH HOH . K 5 HOH C 86 586 2011 HOH HOH . K 5 HOH C 87 587 2053 HOH HOH . K 5 HOH C 88 588 2008 HOH HOH . K 5 HOH C 89 589 2063 HOH HOH . K 5 HOH C 90 590 2022 HOH HOH . K 5 HOH C 91 591 2029 HOH HOH . K 5 HOH C 92 592 2043 HOH HOH . K 5 HOH C 93 593 2034 HOH HOH . K 5 HOH C 94 594 2016 HOH HOH . K 5 HOH C 95 595 2025 HOH HOH . K 5 HOH C 96 596 2019 HOH HOH . K 5 HOH C 97 597 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -5.995 -23.271 37.322 1 33 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . E 3 -6.479 -21.941 37.431 1 20.84 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . E 3 -6.902 -24.292 36.626 1 36.81 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . E 3 -8.266 -23.877 36.625 1 41.81 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . E 3 -6.872 -25.646 37.344 1 41.14 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . E 3 -6.165 -25.559 38.572 1 45.37 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #