data_2XB5 # _model_server_result.job_id krJ5WfzVj7s-p0hLLWxK_A _model_server_result.datetime_utc '2024-11-06 17:34:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":222}' # _entry.id 2XB5 # _exptl.entry_id 2XB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 540.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-IODOTETRACYCLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XB5 _cell.length_a 68.86 _cell.length_b 68.86 _cell.length_c 180.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 68.86 68.86 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 100 1_555 C MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc2 B O12 I7T . A I7T 222 1_555 C MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 B O11 I7T . A I7T 222 1_555 C MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc4 C MG MG . A MG 223 1_555 E O HOH . A HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc5 C MG MG . A MG 223 1_555 E O HOH . A HOH 2029 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc6 C MG MG . A MG 223 1_555 E O HOH . A HOH 2039 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? # _chem_comp.formula 'C21 H21 I N2 O7' _chem_comp.formula_weight 540.305 _chem_comp.id I7T _chem_comp.mon_nstd_flag . _chem_comp.name 7-IODOTETRACYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C12 I7T sing 139 n n C12 C1B I7T doub 140 n n C12 C1C I7T sing 141 n n C1B C11 I7T sing 142 n n C1B C5A I7T sing 143 n n C11 O11 I7T doub 144 n n C11 C1A I7T sing 145 n n C1A C10 I7T sing 146 n y C1A C61 I7T doub 147 n y C10 O10 I7T sing 148 n n C10 C9 I7T doub 149 n y C9 C8 I7T sing 150 n y C8 C7 I7T doub 151 n y C7 C61 I7T sing 152 n y C7 I7 I7T sing 153 n n C61 C6 I7T sing 154 n n C6 C5A I7T sing 155 n n C5 C41 I7T sing 156 n n C5 C5A I7T sing 157 n n C1C C1 I7T sing 158 n n C1C O1C I7T sing 159 n n C1C C41 I7T sing 160 n n C1 O1 I7T doub 161 n n C1 C2 I7T sing 162 n n C41 C4 I7T sing 163 n n C4 N4 I7T sing 164 n n C4 C3 I7T sing 165 n n N4 C43 I7T sing 166 n n N4 C42 I7T sing 167 n n C3 O3 I7T sing 168 n n C3 C2 I7T doub 169 n n C2 C21 I7T sing 170 n n C21 O21 I7T doub 171 n n C21 N21 I7T sing 172 n n O12 H12 I7T sing 173 n n C5A H5A I7T sing 174 n n O10 H10 I7T sing 175 n n C9 H9 I7T sing 176 n n C8 H8 I7T sing 177 n n C6 H61C I7T sing 178 n n C6 H62C I7T sing 179 n n C5 H51C I7T sing 180 n n C5 H52C I7T sing 181 n n C41 H41 I7T sing 182 n n O1C H1C I7T sing 183 n n C4 H4 I7T sing 184 n n C43 H431 I7T sing 185 n n C43 H432 I7T sing 186 n n C43 H433 I7T sing 187 n n C42 H421 I7T sing 188 n n C42 H422 I7T sing 189 n n C42 H423 I7T sing 190 n n O3 H3 I7T sing 191 n n N21 H211 I7T sing 192 n n N21 H212 I7T sing 193 n n # _atom_sites.entry_id 2XB5 _atom_sites.fract_transf_matrix[1][1] 0.014522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I7T A 1 222 222 I7T I7T . C 3 MG A 1 223 223 MG MG . D 4 CL A 1 1209 1209 CL CL . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 I7T . . . B 2 22.545 35.67 32.374 1 16.49 ? O12 I7T 222 A 1 HETATM 2 C C12 I7T . . . B 2 22.133 35.931 33.631 1 17.77 ? C12 I7T 222 A 1 HETATM 3 C C1B I7T . . . B 2 22.125 37.184 34.105 1 18.69 ? C1B I7T 222 A 1 HETATM 4 C C11 I7T . . . B 2 22.58 38.313 33.295 1 20.36 ? C11 I7T 222 A 1 HETATM 5 O O11 I7T . . . B 2 23.008 38.188 32.106 1 18.63 ? O11 I7T 222 A 1 HETATM 6 C C1A I7T . . . B 2 22.351 39.677 33.875 1 22.52 ? C1A I7T 222 A 1 HETATM 7 C C10 I7T . . . B 2 22.996 40.738 33.316 1 23.08 ? C10 I7T 222 A 1 HETATM 8 O O10 I7T . . . B 2 23.718 40.508 32.26 1 26 ? O10 I7T 222 A 1 HETATM 9 C C9 I7T . . . B 2 22.852 42.026 33.793 1 28.19 ? C9 I7T 222 A 1 HETATM 10 C C8 I7T . . . B 2 22.049 42.276 34.874 1 29.21 ? C8 I7T 222 A 1 HETATM 11 C C7 I7T . . . B 2 21.412 41.228 35.486 1 29.44 ? C7 I7T 222 A 1 HETATM 12 C C61 I7T . . . B 2 21.56 39.91 34.996 1 25.23 ? C61 I7T 222 A 1 HETATM 13 C C6 I7T . . . B 2 20.869 38.751 35.636 1 22.49 ? C6 I7T 222 A 1 HETATM 14 C C5 I7T . . . B 2 21.066 36.35 36.262 1 19.39 ? C5 I7T 222 A 1 HETATM 15 C C1C I7T . . . B 2 21.651 34.781 34.497 1 19.74 ? C1C I7T 222 A 1 HETATM 16 C C1 I7T . . . B 2 20.185 34.512 34.242 1 21.94 ? C1 I7T 222 A 1 HETATM 17 O O1 I7T . . . B 2 19.624 35.029 33.278 1 25.92 ? O1 I7T 222 A 1 HETATM 18 O O1C I7T . . . B 2 22.395 33.595 34.173 1 26.19 ? O1C I7T 222 A 1 HETATM 19 C C41 I7T . . . B 2 21.8 35.056 35.966 1 19.67 ? C41 I7T 222 A 1 HETATM 20 C C4 I7T . . . B 2 21.266 33.927 36.861 1 21 ? C4 I7T 222 A 1 HETATM 21 N N4 I7T . . . B 2 22.291 33.097 37.576 1 26.84 ? N4 I7T 222 A 1 HETATM 22 C C42 I7T . . . B 2 22.757 33.932 38.713 1 25.75 ? C42 I7T 222 A 1 HETATM 23 C C43 I7T . . . B 2 23.421 32.643 36.749 1 25.3 ? C43 I7T 222 A 1 HETATM 24 C C3 I7T . . . B 2 20.135 33.172 36.233 1 20.05 ? C3 I7T 222 A 1 HETATM 25 O O3 I7T . . . B 2 19.633 32.216 36.956 1 26.31 ? O3 I7T 222 A 1 HETATM 26 C C2 I7T . . . B 2 19.539 33.49 35.077 1 22.25 ? C2 I7T 222 A 1 HETATM 27 C C21 I7T . . . B 2 18.288 32.815 34.569 1 27.21 ? C21 I7T 222 A 1 HETATM 28 C C5A I7T . . . B 2 21.745 37.516 35.535 1 20.05 ? C5A I7T 222 A 1 HETATM 29 O O21 I7T . . . B 2 17.559 32.067 35.243 1 27.57 ? O21 I7T 222 A 1 HETATM 30 I I7 I7T . . . B 2 20.23 41.767 37.144 1 38.7 ? I7 I7T 222 A 1 HETATM 31 N N21 I7T . . . B 2 17.812 33.153 33.37 1 29.71 ? N21 I7T 222 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #