data_2XB8 # _model_server_result.job_id QpXsbTmryz8El7KvYJvvuQ _model_server_result.datetime_utc '2024-10-12 14:32:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1144}' # _entry.id 2XB8 # _exptl.entry_id 2XB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.299 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2R,4S,5R)-1,4,5-TRIHYDROXY-2-(4-METHOXYBENZYL)-3-OXOCYCLOHEXANECARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XB8 _cell.length_a 126.52 _cell.length_b 126.52 _cell.length_c 126.52 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 22_545 -y,z-1/2,-x+1/2 0 -1 0 0 0 1 -1 0 0 0 -63.26 63.26 3 'crystal symmetry operation' 30_455 z-1/2,-x,-y+1/2 0 0 1 -1 0 0 0 -1 0 -63.26 0 63.26 4 'crystal symmetry operation' 31_555 -z+1/2,-x,y+1/2 0 0 -1 -1 0 0 0 1 0 63.26 0 63.26 5 'crystal symmetry operation' 29_455 z-1/2,x,y+1/2 0 0 1 1 0 0 0 1 0 -63.26 0 63.26 6 'crystal symmetry operation' 21_545 y,z-1/2,x+1/2 0 1 0 0 0 1 1 0 0 0 -63.26 63.26 7 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 8 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 126.52 9 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 126.52 10 'crystal symmetry operation' 32_555 -z+1/2,x,-y+1/2 0 0 -1 1 0 0 0 -1 0 63.26 0 63.26 11 'crystal symmetry operation' 23_555 y,-z+1/2,-x+1/2 0 1 0 0 0 -1 -1 0 0 0 63.26 63.26 12 'crystal symmetry operation' 24_555 -y,-z+1/2,x+1/2 0 -1 0 0 0 -1 1 0 0 0 63.26 63.26 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H18 O7' _chem_comp.formula_weight 310.299 _chem_comp.id XNW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2R,4S,5R)-1,4,5-TRIHYDROXY-2-(4-METHOXYBENZYL)-3-OXOCYCLOHEXANECARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-METHOXYBENZYL-3-DEHYDROQUINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA OAN XNW sing 380 n n OAN CAR XNW sing 381 n n CAR CAK XNW sing 382 n y CAR CAJ XNW doub 383 n y CAK CAI XNW doub 384 n y CAI CAQ XNW sing 385 n y CAJ CAH XNW sing 386 n y CAH CAQ XNW doub 387 n y CAQ CAL XNW sing 388 n n CAL CAU XNW sing 389 n n CAU CAP XNW sing 390 n n CAU CAV XNW sing 391 n n CAP OAC XNW doub 392 n n CAP CAT XNW sing 393 n n CAT OAF XNW sing 394 n n CAT CAS XNW sing 395 n n CAS OAE XNW sing 396 n n CAS CAM XNW sing 397 n n CAM CAV XNW sing 398 n n CAV CAO XNW sing 399 n n CAV OAG XNW sing 400 n n CAO OAD XNW sing 401 n n CAO OAB XNW doub 402 n n CAA HAA1 XNW sing 403 n n CAA HAA2 XNW sing 404 n n CAA HAA3 XNW sing 405 n n CAK HAK XNW sing 406 n n CAJ HAJ XNW sing 407 n n CAI HAI XNW sing 408 n n CAH HAH XNW sing 409 n n CAL HAL1 XNW sing 410 n n CAL HAL2 XNW sing 411 n n CAU HAU XNW sing 412 n n CAT HAT XNW sing 413 n n OAF HAF XNW sing 414 n n CAS HAS XNW sing 415 n n OAE HAE XNW sing 416 n n CAM HAM1 XNW sing 417 n n CAM HAM2 XNW sing 418 n n OAG HAG XNW sing 419 n n OAD HAD XNW sing 420 n n # _atom_sites.entry_id 2XB8 _atom_sites.fract_transf_matrix[1][1] 0.007904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XNW A 1 1144 1144 XNW XNW . C 3 SO4 A 1 1145 1145 SO4 SO4 . D 3 SO4 A 1 1146 1146 SO4 SO4 . E 3 SO4 A 1 1147 1147 SO4 SO4 . F 3 SO4 A 1 1148 1148 SO4 SO4 . G 3 SO4 A 1 1149 1149 SO4 SO4 . H 3 SO4 A 1 1150 1150 SO4 SO4 . I 3 SO4 A 1 1151 1151 SO4 SO4 . J 4 TRS A 1 1152 1152 TRS TRS . K 5 HOH A 1 2001 2001 HOH HOH . K 5 HOH A 2 2002 2002 HOH HOH . K 5 HOH A 3 2003 2003 HOH HOH . K 5 HOH A 4 2004 2004 HOH HOH . K 5 HOH A 5 2005 2005 HOH HOH . K 5 HOH A 6 2006 2006 HOH HOH . K 5 HOH A 7 2007 2007 HOH HOH . K 5 HOH A 8 2008 2008 HOH HOH . K 5 HOH A 9 2009 2009 HOH HOH . K 5 HOH A 10 2010 2010 HOH HOH . K 5 HOH A 11 2011 2011 HOH HOH . K 5 HOH A 12 2012 2012 HOH HOH . K 5 HOH A 13 2013 2013 HOH HOH . K 5 HOH A 14 2014 2014 HOH HOH . K 5 HOH A 15 2015 2015 HOH HOH . K 5 HOH A 16 2016 2016 HOH HOH . K 5 HOH A 17 2017 2017 HOH HOH . K 5 HOH A 18 2018 2018 HOH HOH . K 5 HOH A 19 2019 2019 HOH HOH . K 5 HOH A 20 2020 2020 HOH HOH . K 5 HOH A 21 2021 2021 HOH HOH . K 5 HOH A 22 2022 2022 HOH HOH . K 5 HOH A 23 2023 2023 HOH HOH . K 5 HOH A 24 2024 2024 HOH HOH . K 5 HOH A 25 2025 2025 HOH HOH . K 5 HOH A 26 2026 2026 HOH HOH . K 5 HOH A 27 2027 2027 HOH HOH . K 5 HOH A 28 2028 2028 HOH HOH . K 5 HOH A 29 2029 2029 HOH HOH . K 5 HOH A 30 2030 2030 HOH HOH . K 5 HOH A 31 2031 2031 HOH HOH . K 5 HOH A 32 2032 2032 HOH HOH . K 5 HOH A 33 2033 2033 HOH HOH . K 5 HOH A 34 2034 2034 HOH HOH . K 5 HOH A 35 2035 2035 HOH HOH . K 5 HOH A 36 2036 2036 HOH HOH . K 5 HOH A 37 2037 2037 HOH HOH . K 5 HOH A 38 2038 2038 HOH HOH . K 5 HOH A 39 2039 2039 HOH HOH . K 5 HOH A 40 2040 2040 HOH HOH . K 5 HOH A 41 2041 2041 HOH HOH . K 5 HOH A 42 2042 2042 HOH HOH . K 5 HOH A 43 2043 2043 HOH HOH . K 5 HOH A 44 2044 2044 HOH HOH . K 5 HOH A 45 2045 2045 HOH HOH . K 5 HOH A 46 2046 2046 HOH HOH . K 5 HOH A 47 2047 2047 HOH HOH . K 5 HOH A 48 2048 2048 HOH HOH . K 5 HOH A 49 2049 2049 HOH HOH . K 5 HOH A 50 2050 2050 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA XNW . . . B 2 20.244 1.668 36.833 1 29.91 ? CAA XNW 1144 A 1 HETATM 2 O OAN XNW . . . B 2 19.13 1.471 35.962 1 27.43 ? OAN XNW 1144 A 1 HETATM 3 C CAR XNW . . . B 2 17.974 2.016 36.494 1 25.92 ? CAR XNW 1144 A 1 HETATM 4 C CAK XNW . . . B 2 16.801 1.694 35.864 1 25.44 ? CAK XNW 1144 A 1 HETATM 5 C CAI XNW . . . B 2 15.568 2.155 36.286 1 24.52 ? CAI XNW 1144 A 1 HETATM 6 C CAJ XNW . . . B 2 17.885 2.858 37.601 1 23.44 ? CAJ XNW 1144 A 1 HETATM 7 C CAH XNW . . . B 2 16.624 3.333 38.023 1 24.28 ? CAH XNW 1144 A 1 HETATM 8 C CAQ XNW . . . B 2 15.449 2.984 37.36 1 20.9 ? CAQ XNW 1144 A 1 HETATM 9 C CAL XNW . . . B 2 14.032 3.454 37.703 1 19.39 ? CAL XNW 1144 A 1 HETATM 10 C CAU XNW . . . B 2 13.369 2.705 38.852 1 15.79 ? CAU XNW 1144 A 1 HETATM 11 C CAP XNW . . . B 2 13.762 3.375 40.168 1 14.58 ? CAP XNW 1144 A 1 HETATM 12 O OAC XNW . . . B 2 14.528 4.341 40.2 1 14.33 ? OAC XNW 1144 A 1 HETATM 13 C CAT XNW . . . B 2 13.182 2.849 41.463 1 14.42 ? CAT XNW 1144 A 1 HETATM 14 O OAF XNW . . . B 2 13.444 3.812 42.508 1 12.17 ? OAF XNW 1144 A 1 HETATM 15 C CAS XNW . . . B 2 11.667 2.729 41.295 1 14.75 ? CAS XNW 1144 A 1 HETATM 16 O OAE XNW . . . B 2 11.138 2.043 42.437 1 13.58 ? OAE XNW 1144 A 1 HETATM 17 C CAM XNW . . . B 2 11.243 2.027 39.981 1 15.12 ? CAM XNW 1144 A 1 HETATM 18 C CAV XNW . . . B 2 11.843 2.666 38.721 1 13.65 ? CAV XNW 1144 A 1 HETATM 19 C CAO XNW . . . B 2 11.461 1.807 37.496 1 13.91 ? CAO XNW 1144 A 1 HETATM 20 O OAD XNW . . . B 2 11.501 0.552 37.64 1 14.65 ? OAD XNW 1144 A 1 HETATM 21 O OAB XNW . . . B 2 11.061 2.42 36.467 1 10.29 ? OAB XNW 1144 A 1 HETATM 22 O OAG XNW . . . B 2 11.276 3.995 38.54 1 11.73 ? OAG XNW 1144 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #