data_2XBA # _model_server_result.job_id zbFfOrlcEJ_EZyafPIXl5A _model_server_result.datetime_utc '2024-10-15 06:12:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 2XBA # _exptl.entry_id 2XBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.52 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(2R)-2-hydroxy-2-phenylacetyl]-3-({[4-(4-methylpiperazin-1-yl)phenyl]carbonyl}amino)-1,6-dihydropyrrolo[3,4-c]pyrazol-5-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XBA _cell.length_a 51.884 _cell.length_b 57.013 _cell.length_c 105.541 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H27 N6 O3 1' _chem_comp.formula_weight 459.52 _chem_comp.id 571 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(2R)-2-hydroxy-2-phenylacetyl]-3-({[4-(4-methylpiperazin-1-yl)phenyl]carbonyl}amino)-1,6-dihydropyrrolo[3,4-c]pyrazol-5-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C15 571 doub 1 n n N1 C16 571 sing 2 n n N1 C25 571 sing 3 n n N2 N4 571 sing 4 n y N2 C13 571 sing 5 n y C3 N4 571 doub 6 n y C3 N5 571 sing 7 n n C3 C14 571 sing 8 n y N5 C6 571 sing 9 n n C6 C7 571 sing 10 n n C6 O8 571 doub 11 n n C7 C9 571 sing 12 n y C7 C12 571 doub 13 n y C9 C10 571 doub 14 n y C10 C24 571 sing 15 n y C11 C12 571 sing 16 n y C11 C24 571 doub 17 n y C13 C14 571 doub 18 n y C13 C16 571 sing 19 n n C14 C15 571 sing 20 n n N17 C18 571 sing 21 n n N17 C22 571 sing 22 n n N17 C24 571 sing 23 n n C18 C19 571 sing 24 n n C19 N20 571 sing 25 n n N20 C21 571 sing 26 n n N20 C23 571 sing 27 n n C21 C22 571 sing 28 n n C25 O26 571 doub 29 n n C25 C20 571 sing 30 n n C27 C28 571 doub 31 n y C27 C29 571 sing 32 n y C27 C20 571 sing 33 n n C28 C31 571 sing 34 n y C29 C33 571 doub 35 n y C31 C35 571 doub 36 n y C33 C35 571 sing 37 n y C20 O34 571 sing 38 n n C15 H15 571 sing 39 n n C16 H161 571 sing 40 n n C16 H162 571 sing 41 n n N2 H2 571 sing 42 n n N5 H5 571 sing 43 n n C9 H9 571 sing 44 n n C12 H12 571 sing 45 n n C10 H10 571 sing 46 n n C11 H11 571 sing 47 n n C18 H181 571 sing 48 n n C18 H182 571 sing 49 n n C22 H221 571 sing 50 n n C22 H222 571 sing 51 n n C19 H191 571 sing 52 n n C19 H192 571 sing 53 n n C21 H211 571 sing 54 n n C21 H212 571 sing 55 n n C23 H231 571 sing 56 n n C23 H232 571 sing 57 n n C23 H233 571 sing 58 n n C20 H20 571 sing 59 n n C28 H28 571 sing 60 n n C29 H29 571 sing 61 n n C31 H31 571 sing 62 n n C33 H33 571 sing 63 n n C35 H35 571 sing 64 n n O34 H34 571 sing 65 n n # _atom_sites.entry_id 2XBA _atom_sites.fract_transf_matrix[1][1] 0.019274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 571 A 1 1501 1501 571 571 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . C 3 HOH A 109 2109 2109 HOH HOH . C 3 HOH A 110 2110 2110 HOH HOH . C 3 HOH A 111 2111 2111 HOH HOH . C 3 HOH A 112 2112 2112 HOH HOH . C 3 HOH A 113 2113 2113 HOH HOH . C 3 HOH A 114 2114 2114 HOH HOH . C 3 HOH A 115 2115 2115 HOH HOH . C 3 HOH A 116 2116 2116 HOH HOH . C 3 HOH A 117 2117 2117 HOH HOH . C 3 HOH A 118 2118 2118 HOH HOH . C 3 HOH A 119 2119 2119 HOH HOH . C 3 HOH A 120 2120 2120 HOH HOH . C 3 HOH A 121 2121 2121 HOH HOH . C 3 HOH A 122 2122 2122 HOH HOH . C 3 HOH A 123 2123 2123 HOH HOH . C 3 HOH A 124 2124 2124 HOH HOH . C 3 HOH A 125 2125 2125 HOH HOH . C 3 HOH A 126 2126 2126 HOH HOH . C 3 HOH A 127 2127 2127 HOH HOH . C 3 HOH A 128 2128 2128 HOH HOH . C 3 HOH A 129 2129 2129 HOH HOH . C 3 HOH A 130 2130 2130 HOH HOH . C 3 HOH A 131 2131 2131 HOH HOH . C 3 HOH A 132 2132 2132 HOH HOH . C 3 HOH A 133 2133 2133 HOH HOH . C 3 HOH A 134 2134 2134 HOH HOH . C 3 HOH A 135 2135 2135 HOH HOH . C 3 HOH A 136 2136 2136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 571 . . . B 2 5.643 14.589 9.059 1 19.79 ? N1 571 1501 A 1 HETATM 2 N N2 571 . . . B 2 2.381 14.756 10.333 1 16.8 ? N2 571 1501 A 1 HETATM 3 C C3 571 . . . B 2 2.599 16.635 9.205 1 17.4 ? C3 571 1501 A 1 HETATM 4 N N4 571 . . . B 2 1.779 15.959 9.925 1 18.4 ? N4 571 1501 A 1 HETATM 5 N N5 571 . . . B 2 2.272 17.935 8.638 1 20.97 ? N5 571 1501 A 1 HETATM 6 C C6 571 . . . B 2 2.891 18.599 7.635 1 22.48 ? C6 571 1501 A 1 HETATM 7 C C7 571 . . . B 2 2.438 19.913 7.241 1 24.73 ? C7 571 1501 A 1 HETATM 8 O O8 571 . . . B 2 3.84 18.092 7.036 1 24.5 ? O8 571 1501 A 1 HETATM 9 C C9 571 . . . B 2 3.292 20.751 6.461 1 27.76 ? C9 571 1501 A 1 HETATM 10 C C10 571 . . . B 2 2.858 22.044 6.074 1 27.76 ? C10 571 1501 A 1 HETATM 11 C C11 571 . . . B 2 0.712 21.642 7.25 1 28.52 ? C11 571 1501 A 1 HETATM 12 C C12 571 . . . B 2 1.151 20.361 7.632 1 25.76 ? C12 571 1501 A 1 HETATM 13 C C13 571 . . . B 2 3.56 14.74 9.843 1 18.64 ? C13 571 1501 A 1 HETATM 14 C C14 571 . . . B 2 3.793 15.822 9.147 1 17.72 ? C14 571 1501 A 1 HETATM 15 C C15 571 . . . B 2 5.128 15.884 8.555 1 16.25 ? C15 571 1501 A 1 HETATM 16 C C16 571 . . . B 2 4.682 13.78 9.898 1 16.47 ? C16 571 1501 A 1 HETATM 17 N N17 571 . . . B 2 1.12 23.783 6.091 1 35.55 ? N17 571 1501 A 1 HETATM 18 C C18 571 . . . B 2 1.6 24.418 4.852 1 38.02 ? C18 571 1501 A 1 HETATM 19 C C19 571 . . . B 2 1.854 25.952 4.995 1 40.5 ? C19 571 1501 A 1 HETATM 20 N N20 571 . . . B 2 0.943 26.605 5.927 1 40.8 ? N20 571 1501 A 1 HETATM 21 C C21 571 . . . B 2 0.544 25.97 7.158 1 40.61 ? C21 571 1501 A 1 HETATM 22 C C22 571 . . . B 2 0.162 24.493 6.942 1 38.74 ? C22 571 1501 A 1 HETATM 23 C C23 571 . . . B 2 0.442 27.915 5.621 1 41.91 ? C23 571 1501 A 1 HETATM 24 C C24 571 . . . B 2 1.565 22.501 6.465 1 32.26 ? C24 571 1501 A 1 HETATM 25 C C25 571 . . . B 2 6.954 14.157 8.807 1 20.68 ? C25 571 1501 A 1 HETATM 26 O O26 571 . . . B 2 7.313 13.045 9.203 1 19.12 ? O26 571 1501 A 1 HETATM 27 C C27 571 . . . B 2 8.428 16.192 9.041 1 21.94 ? C27 571 1501 A 1 HETATM 28 C C29 571 . . . B 2 8.486 17.518 8.545 1 22.04 ? C29 571 1501 A 1 HETATM 29 C C28 571 . . . B 2 8.761 15.935 10.41 1 18.85 ? C28 571 1501 A 1 HETATM 30 C C33 571 . . . B 2 8.876 18.579 9.409 1 22.66 ? C33 571 1501 A 1 HETATM 31 C C31 571 . . . B 2 9.144 16.988 11.266 1 18.91 ? C31 571 1501 A 1 HETATM 32 C C20 571 . . . B 2 7.979 15.064 8.1 1 21.38 ? C20 571 1501 A 1 HETATM 33 C C35 571 . . . B 2 9.202 18.315 10.771 1 19.09 ? C35 571 1501 A 1 HETATM 34 O O34 571 . . . B 2 9.101 14.323 7.708 1 24.07 ? O34 571 1501 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 34 #