data_2XCN # _model_server_result.job_id t_yQYgerUXlGqw56kJC7xQ _model_server_result.datetime_utc '2025-02-27 18:46:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1181}' # _entry.id 2XCN # _exptl.entry_id 2XCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 583.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(CYCLOPENTYLOXY)CARBONYL]-3-METHYL-L-VALYL-(4R)-N-{(1R)-3-HYDROXY-1-[HYDROXY(OXIDO)BORANYL]PROPYL}-4-(ISOQUINOLIN-1-YLOXY)-L-PROLINAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XCN _cell.length_a 231.37 _cell.length_b 231.37 _cell.length_c 75.667 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 149 A SER 139 1_555 E B C8D . A C8D 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale2 B OG SER 149 B SER 139 1_555 H B C8D . B C8D 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? metalc ? metalc1 A O THR 14 A THR 4 1_555 J MG MG . C MG 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A OG1 THR 14 A THR 4 1_555 J MG MG . C MG 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc3 A O ALA 15 A ALA 5 1_555 F MG MG . A MG 1182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc4 A SG CYS 107 A CYS 97 1_555 G ZN ZN . A ZN 1183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 A SG CYS 109 A CYS 99 1_555 G ZN ZN . A ZN 1183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc6 A O ALA 121 A ALA 111 1_555 F MG MG . A MG 1182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc7 A SG CYS 155 A CYS 145 1_555 G ZN ZN . A ZN 1183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc8 F MG MG . A MG 1182 1_555 K O HOH . A HOH 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc9 F MG MG . A MG 1182 1_555 L O HOH . B HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc10 G ZN ZN . A ZN 1183 1_555 K O HOH . A HOH 2024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc11 B SG CYS 107 B CYS 97 1_555 I ZN ZN . B ZN 1182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc12 B SG CYS 109 B CYS 99 1_555 I ZN ZN . B ZN 1182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc13 B SG CYS 155 B CYS 145 1_555 I ZN ZN . B ZN 1182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc14 I ZN ZN . B ZN 1182 1_555 L O HOH . B HOH 2021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc15 C O LEU 13 C LEU 31 1_555 J MG MG . C MG 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc16 C O GLY 15 C GLY 33 1_555 J MG MG . C MG 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc17 J MG MG . C MG 1041 1_555 M O HOH . C HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? # _chem_comp.formula 'C29 H40 B N4 O8 -1' _chem_comp.formula_weight 583.461 _chem_comp.id C8D _chem_comp.mon_nstd_flag . _chem_comp.name N-[(CYCLOPENTYLOXY)CARBONYL]-3-METHYL-L-VALYL-(4R)-N-{(1R)-3-HYDROXY-1-[HYDROXY(OXIDO)BORANYL]PROPYL}-4-(ISOQUINOLIN-1-YLOXY)-L-PROLINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C6 C8D doub 70 n n C6 O2 C8D sing 71 n n C6 N1 C8D sing 72 n n O2 C7 C8D sing 73 n n C7 C8 C8D sing 74 n n C7 C11 C8D sing 75 n n C8 C9 C8D sing 76 n n C9 C10 C8D sing 77 n n C10 C11 C8D sing 78 n n N1 C5 C8D sing 79 n n C5 C2 C8D sing 80 n n C5 C12 C8D sing 81 n n C2 C1 C8D sing 82 n n C2 C3 C8D sing 83 n n C2 C4 C8D sing 84 n n C12 O3 C8D doub 85 n n C12 N2 C8D sing 86 n n N2 C16 C8D sing 87 n n N2 C13 C8D sing 88 n n C16 C17 C8D sing 89 n n C16 C15 C8D sing 90 n n C17 N3 C8D sing 91 n n C17 O4 C8D doub 92 n n N3 C18 C8D sing 93 n n C18 C19 C8D sing 94 n n C18 B C8D sing 95 n n C19 C20 C8D sing 96 n n C20 O5 C8D sing 97 n n B O6 C8D sing 98 n n B O8 C8D sing 99 n n C13 C14 C8D sing 100 n n C14 C15 C8D sing 101 n n C14 O7 C8D sing 102 n n O7 C21 C8D sing 103 n n C21 N4 C8D sing 104 n y C21 C29 C8D doub 105 n y N4 C22 C8D doub 106 n y C22 C23 C8D sing 107 n y C23 C24 C8D doub 108 n y C24 C29 C8D sing 109 n y C24 C25 C8D sing 110 n y C29 C28 C8D sing 111 n y C25 C26 C8D doub 112 n y C26 C27 C8D sing 113 n y C27 C28 C8D doub 114 n y N1 H1 C8D sing 115 n n C7 H7 C8D sing 116 n n C8 H81C C8D sing 117 n n C8 H82C C8D sing 118 n n C11 H111 C8D sing 119 n n C11 H112 C8D sing 120 n n C9 H91C C8D sing 121 n n C9 H92C C8D sing 122 n n C10 H101 C8D sing 123 n n C10 H102 C8D sing 124 n n C5 H5 C8D sing 125 n n C1 H11C C8D sing 126 n n C1 H12C C8D sing 127 n n C1 H13C C8D sing 128 n n C3 H31C C8D sing 129 n n C3 H32C C8D sing 130 n n C3 H33C C8D sing 131 n n C4 H41C C8D sing 132 n n C4 H42C C8D sing 133 n n C4 H43C C8D sing 134 n n C16 H16 C8D sing 135 n n C13 H131 C8D sing 136 n n C13 H132 C8D sing 137 n n C15 H151 C8D sing 138 n n C15 H152 C8D sing 139 n n N3 H3 C8D sing 140 n n C18 H18 C8D sing 141 n n C19 H191 C8D sing 142 n n C19 H192 C8D sing 143 n n C20 H201 C8D sing 144 n n C20 H202 C8D sing 145 n n O5 HA C8D sing 146 n n O6 H6 C8D sing 147 n n C14 H14 C8D sing 148 n n C22 H22 C8D sing 149 n n C23 H23 C8D sing 150 n n C25 H25 C8D sing 151 n n C28 H28 C8D sing 152 n n C26 H26 C8D sing 153 n n C27 H27 C8D sing 154 n n # _atom_sites.entry_id 2XCN _atom_sites.fract_transf_matrix[1][1] 0.004322 _atom_sites.fract_transf_matrix[1][2] 0.002495 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 C8D A 1 1181 1181 C8D C8D . F 4 MG A 1 1182 1182 MG MG . G 5 ZN A 1 1183 1183 ZN ZN . H 3 C8D B 1 1181 1181 C8D C8D . I 5 ZN B 1 1182 1182 ZN ZN . J 4 MG C 1 1041 1041 MG MG . K 6 HOH A 1 2001 2001 HOH HOH . K 6 HOH A 2 2002 2002 HOH HOH . K 6 HOH A 3 2003 2003 HOH HOH . K 6 HOH A 4 2004 2004 HOH HOH . K 6 HOH A 5 2005 2005 HOH HOH . K 6 HOH A 6 2006 2006 HOH HOH . K 6 HOH A 7 2007 2007 HOH HOH . K 6 HOH A 8 2008 2008 HOH HOH . K 6 HOH A 9 2009 2009 HOH HOH . K 6 HOH A 10 2010 2010 HOH HOH . K 6 HOH A 11 2011 2011 HOH HOH . K 6 HOH A 12 2012 2012 HOH HOH . K 6 HOH A 13 2013 2013 HOH HOH . K 6 HOH A 14 2014 2014 HOH HOH . K 6 HOH A 15 2015 2015 HOH HOH . K 6 HOH A 16 2016 2016 HOH HOH . K 6 HOH A 17 2017 2017 HOH HOH . K 6 HOH A 18 2018 2018 HOH HOH . K 6 HOH A 19 2019 2019 HOH HOH . K 6 HOH A 20 2020 2020 HOH HOH . K 6 HOH A 21 2021 2021 HOH HOH . K 6 HOH A 22 2022 2022 HOH HOH . K 6 HOH A 23 2023 2023 HOH HOH . K 6 HOH A 24 2024 2024 HOH HOH . L 6 HOH B 1 2001 2001 HOH HOH . L 6 HOH B 2 2002 2002 HOH HOH . L 6 HOH B 3 2003 2003 HOH HOH . L 6 HOH B 4 2004 2004 HOH HOH . L 6 HOH B 5 2005 2005 HOH HOH . L 6 HOH B 6 2006 2006 HOH HOH . L 6 HOH B 7 2007 2007 HOH HOH . L 6 HOH B 8 2008 2008 HOH HOH . L 6 HOH B 9 2009 2009 HOH HOH . L 6 HOH B 10 2010 2010 HOH HOH . L 6 HOH B 11 2011 2011 HOH HOH . L 6 HOH B 12 2012 2012 HOH HOH . L 6 HOH B 13 2013 2013 HOH HOH . L 6 HOH B 14 2014 2014 HOH HOH . L 6 HOH B 15 2015 2015 HOH HOH . L 6 HOH B 16 2016 2016 HOH HOH . L 6 HOH B 17 2017 2017 HOH HOH . L 6 HOH B 18 2018 2018 HOH HOH . L 6 HOH B 19 2019 2019 HOH HOH . L 6 HOH B 20 2020 2020 HOH HOH . L 6 HOH B 21 2021 2021 HOH HOH . M 6 HOH C 1 2001 2001 HOH HOH . M 6 HOH C 2 2002 2002 HOH HOH . M 6 HOH C 3 2003 2003 HOH HOH . M 6 HOH C 4 2004 2004 HOH HOH . M 6 HOH C 5 2005 2005 HOH HOH . N 6 HOH D 1 2001 2001 HOH HOH . N 6 HOH D 2 2002 2002 HOH HOH . N 6 HOH D 3 2003 2003 HOH HOH . N 6 HOH D 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 C8D . . . E 3 6.581 33.618 11.817 1 63.39 ? O1 C8D 1181 A 1 HETATM 2 C C6 C8D . . . E 3 7.676 33.579 11.344 1 65.12 ? C6 C8D 1181 A 1 HETATM 3 O O2 C8D . . . E 3 8.512 34.626 11.365 1 64.34 ? O2 C8D 1181 A 1 HETATM 4 C C7 C8D . . . E 3 8.211 35.866 12.033 1 63.44 ? C7 C8D 1181 A 1 HETATM 5 C C8 C8D . . . E 3 9.442 36.759 11.957 1 63.79 ? C8 C8D 1181 A 1 HETATM 6 C C9 C8D . . . E 3 10.202 36.564 13.273 1 64.18 ? C9 C8D 1181 A 1 HETATM 7 C C10 C8D . . . E 3 9.154 36.183 14.319 1 64.12 ? C10 C8D 1181 A 1 HETATM 8 C C11 C8D . . . E 3 7.926 35.689 13.537 1 64.72 ? C11 C8D 1181 A 1 HETATM 9 N N1 C8D . . . E 3 8.192 32.469 10.753 1 66.27 ? N1 C8D 1181 A 1 HETATM 10 C C5 C8D . . . E 3 7.373 31.243 10.682 1 68.65 ? C5 C8D 1181 A 1 HETATM 11 C C2 C8D . . . E 3 7.08 30.751 9.21 1 69.38 ? C2 C8D 1181 A 1 HETATM 12 C C1 C8D . . . E 3 6.894 29.227 9 1 67.48 ? C1 C8D 1181 A 1 HETATM 13 C C3 C8D . . . E 3 5.803 31.487 8.725 1 71.04 ? C3 C8D 1181 A 1 HETATM 14 C C4 C8D . . . E 3 8.218 31.143 8.269 1 68.82 ? C4 C8D 1181 A 1 HETATM 15 C C12 C8D . . . E 3 8.042 30.214 11.667 1 69.83 ? C12 C8D 1181 A 1 HETATM 16 O O3 C8D . . . E 3 9.259 30.031 11.723 1 71.54 ? O3 C8D 1181 A 1 HETATM 17 N N2 C8D . . . E 3 7.165 29.542 12.467 1 68 ? N2 C8D 1181 A 1 HETATM 18 C C16 C8D . . . E 3 7.567 28.567 13.501 1 67.32 ? C16 C8D 1181 A 1 HETATM 19 C C17 C8D . . . E 3 8.14 27.251 12.961 1 67.59 ? C17 C8D 1181 A 1 HETATM 20 N N3 C8D . . . E 3 8.713 26.418 13.877 1 66.47 ? N3 C8D 1181 A 1 HETATM 21 C C18 C8D . . . E 3 9.288 25.124 13.479 1 62.18 ? C18 C8D 1181 A 1 HETATM 22 C C19 C8D . . . E 3 10.824 25.166 13.212 1 62.7 ? C19 C8D 1181 A 1 HETATM 23 C C20 C8D . . . E 3 11.198 26.437 12.403 1 64.24 ? C20 C8D 1181 A 1 HETATM 24 O O5 C8D . . . E 3 10.874 26.211 11.035 1 64.7 ? O5 C8D 1181 A 1 HETATM 25 B B C8D . . . E 3 8.978 23.986 14.55 1 57.48 ? B C8D 1181 A 1 HETATM 26 O O6 C8D . . . E 3 7.744 23.499 14.718 1 49.76 ? O6 C8D 1181 A 1 HETATM 27 O O8 C8D . . . E 3 9.725 22.713 14.149 1 58.12 ? O8 C8D 1181 A 1 HETATM 28 O O4 C8D . . . E 3 8.059 27.02 11.766 1 71.26 ? O4 C8D 1181 A 1 HETATM 29 C C13 C8D . . . E 3 5.722 29.76 12.404 1 65.52 ? C13 C8D 1181 A 1 HETATM 30 C C14 C8D . . . E 3 5.328 29.451 13.842 1 64.38 ? C14 C8D 1181 A 1 HETATM 31 C C15 C8D . . . E 3 6.226 28.229 14.155 1 66.64 ? C15 C8D 1181 A 1 HETATM 32 O O7 C8D . . . E 3 5.735 30.599 14.554 1 60.53 ? O7 C8D 1181 A 1 HETATM 33 C C21 C8D . . . E 3 5.132 30.809 15.794 1 59.53 ? C21 C8D 1181 A 1 HETATM 34 N N4 C8D . . . E 3 4.112 30.01 16.253 1 59.96 ? N4 C8D 1181 A 1 HETATM 35 C C22 C8D . . . E 3 3.6 30.19 17.504 1 58.86 ? C22 C8D 1181 A 1 HETATM 36 C C23 C8D . . . E 3 4.069 31.186 18.378 1 57.11 ? C23 C8D 1181 A 1 HETATM 37 C C24 C8D . . . E 3 5.109 32.031 17.936 1 55.92 ? C24 C8D 1181 A 1 HETATM 38 C C29 C8D . . . E 3 5.649 31.845 16.63 1 57.4 ? C29 C8D 1181 A 1 HETATM 39 C C25 C8D . . . E 3 5.605 33.037 18.791 1 54.18 ? C25 C8D 1181 A 1 HETATM 40 C C26 C8D . . . E 3 6.64 33.863 18.333 1 54.06 ? C26 C8D 1181 A 1 HETATM 41 C C27 C8D . . . E 3 7.171 33.688 17.038 1 54.98 ? C27 C8D 1181 A 1 HETATM 42 C C28 C8D . . . E 3 6.695 32.686 16.18 1 54.49 ? C28 C8D 1181 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 441 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #