data_2XE7
#
_model_server_result.job_id            YIvO5Gtx07co_u5IXMw83Q 
_model_server_result.datetime_utc      '2024-11-28 03:25:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xe7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1418}' 
#
_entry.id    2XE7 
#
_exptl.entry_id    2XE7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2XE7 
_cell.length_a            58.62 
_cell.length_b            73.45 
_cell.length_c            93.44 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XE7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 18 n n 
PB O2B ADP sing 19 n n 
PB O3B ADP sing 20 n n 
PB O3A ADP sing 21 n n 
O2B HOB2 ADP sing 22 n n 
O3B HOB3 ADP sing 23 n n 
PA O1A ADP doub 24 n n 
PA O2A ADP sing 25 n n 
PA O3A ADP sing 26 n n 
PA O5' ADP sing 27 n n 
O2A HOA2 ADP sing 28 n n 
O5' C5' ADP sing 29 n n 
C5' C4' ADP sing 30 n n 
C5' "H5'1" ADP sing 31 n n 
C5' "H5'2" ADP sing 32 n n 
C4' O4' ADP sing 33 n n 
C4' C3' ADP sing 34 n n 
C4' H4' ADP sing 35 n n 
O4' C1' ADP sing 36 n n 
C3' O3' ADP sing 37 n n 
C3' C2' ADP sing 38 n n 
C3' H3' ADP sing 39 n n 
O3' HO3' ADP sing 40 n n 
C2' O2' ADP sing 41 n n 
C2' C1' ADP sing 42 n n 
C2' H2' ADP sing 43 n n 
O2' HO2' ADP sing 44 n n 
C1' N9 ADP sing 45 n n 
C1' H1' ADP sing 46 n n 
N9 C8 ADP sing 47 n y 
N9 C4 ADP sing 48 n y 
C8 N7 ADP doub 49 n y 
C8 H8 ADP sing 50 n n 
N7 C5 ADP sing 51 n y 
C5 C6 ADP sing 52 n y 
C5 C4 ADP doub 53 n y 
C6 N6 ADP sing 54 n n 
C6 N1 ADP doub 55 n y 
N6 HN61 ADP sing 56 n n 
N6 HN62 ADP sing 57 n n 
N1 C2 ADP sing 58 n y 
C2 N3 ADP doub 59 n y 
C2 H2 ADP sing 60 n n 
N3 C4 ADP sing 61 n y 
#
_atom_sites.entry_id                     2XE7 
_atom_sites.fract_transf_matrix[1][1]    0.017059 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013615 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010702 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 3PG A 1 1417 1417 3PG 3PG . 
C 3 ADP A 1 1418 1418 ADP ADP . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
D 4 HOH A 33 2033 2033 HOH HOH . 
D 4 HOH A 34 2034 2034 HOH HOH . 
D 4 HOH A 35 2035 2035 HOH HOH . 
D 4 HOH A 36 2036 2036 HOH HOH . 
D 4 HOH A 37 2037 2037 HOH HOH . 
D 4 HOH A 38 2038 2038 HOH HOH . 
D 4 HOH A 39 2039 2039 HOH HOH . 
D 4 HOH A 40 2040 2040 HOH HOH . 
D 4 HOH A 41 2041 2041 HOH HOH . 
D 4 HOH A 42 2042 2042 HOH HOH . 
D 4 HOH A 43 2043 2043 HOH HOH . 
D 4 HOH A 44 2044 2044 HOH HOH . 
D 4 HOH A 45 2045 2045 HOH HOH . 
D 4 HOH A 46 2046 2046 HOH HOH . 
D 4 HOH A 47 2047 2047 HOH HOH . 
D 4 HOH A 48 2048 2048 HOH HOH . 
D 4 HOH A 49 2049 2049 HOH HOH . 
D 4 HOH A 50 2050 2050 HOH HOH . 
D 4 HOH A 51 2051 2051 HOH HOH . 
D 4 HOH A 52 2052 2052 HOH HOH . 
D 4 HOH A 53 2053 2053 HOH HOH . 
D 4 HOH A 54 2054 2054 HOH HOH . 
D 4 HOH A 55 2055 2055 HOH HOH . 
D 4 HOH A 56 2056 2056 HOH HOH . 
D 4 HOH A 57 2057 2057 HOH HOH . 
D 4 HOH A 58 2058 2058 HOH HOH . 
D 4 HOH A 59 2059 2059 HOH HOH . 
D 4 HOH A 60 2060 2060 HOH HOH . 
D 4 HOH A 61 2061 2061 HOH HOH . 
D 4 HOH A 62 2062 2062 HOH HOH . 
D 4 HOH A 63 2063 2063 HOH HOH . 
D 4 HOH A 64 2064 2064 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 -6.023 -21.384 -19.8 1 48.27 ? PB ADP 1418 A 1 
HETATM 2 O O1B ADP . . . C 3 -6.54 -19.962 -19.85 1 47.6 ? O1B ADP 1418 A 1 
HETATM 3 O O2B ADP . . . C 3 -4.962 -21.582 -18.751 1 48.64 ? O2B ADP 1418 A 1 
HETATM 4 O O3B ADP . . . C 3 -5.561 -21.986 -21.139 1 46.77 ? O3B ADP 1418 A 1 
HETATM 5 P PA ADP . . . C 3 -7.392 -23.849 -19.326 1 45.02 ? PA ADP 1418 A 1 
HETATM 6 O O1A ADP . . . C 3 -6.464 -24.322 -20.472 1 41.66 ? O1A ADP 1418 A 1 
HETATM 7 O O2A ADP . . . C 3 -7.156 -24.301 -17.912 1 41.17 ? O2A ADP 1418 A 1 
HETATM 8 O O3A ADP . . . C 3 -7.338 -22.228 -19.314 1 43.96 ? O3A ADP 1418 A 1 
HETATM 9 O O5' ADP . . . C 3 -8.933 -24.253 -19.662 1 40.13 ? O5' ADP 1418 A 1 
HETATM 10 C C5' ADP . . . C 3 -9.856 -23.431 -20.385 1 39.04 ? C5' ADP 1418 A 1 
HETATM 11 C C4' ADP . . . C 3 -11.019 -24.333 -20.853 1 39.52 ? C4' ADP 1418 A 1 
HETATM 12 O O4' ADP . . . C 3 -11.928 -24.539 -19.765 1 38.08 ? O4' ADP 1418 A 1 
HETATM 13 C C3' ADP . . . C 3 -11.867 -23.799 -21.996 1 38.09 ? C3' ADP 1418 A 1 
HETATM 14 O O3' ADP . . . C 3 -11.765 -24.724 -23.091 1 38.5 ? O3' ADP 1418 A 1 
HETATM 15 C C2' ADP . . . C 3 -13.282 -23.72 -21.417 1 38.59 ? C2' ADP 1418 A 1 
HETATM 16 O O2' ADP . . . C 3 -14.309 -24.046 -22.355 1 37.58 ? O2' ADP 1418 A 1 
HETATM 17 C C1' ADP . . . C 3 -13.239 -24.711 -20.266 1 37.47 ? C1' ADP 1418 A 1 
HETATM 18 N N9 ADP . . . C 3 -14.187 -24.466 -19.159 1 37.02 ? N9 ADP 1418 A 1 
HETATM 19 C C8 ADP . . . C 3 -14.305 -23.333 -18.427 1 39.67 ? C8 ADP 1418 A 1 
HETATM 20 N N7 ADP . . . C 3 -15.283 -23.438 -17.486 1 36.9 ? N7 ADP 1418 A 1 
HETATM 21 C C5 ADP . . . C 3 -15.787 -24.676 -17.602 1 36.4 ? C5 ADP 1418 A 1 
HETATM 22 C C6 ADP . . . C 3 -16.861 -25.456 -16.941 1 37.01 ? C6 ADP 1418 A 1 
HETATM 23 N N6 ADP . . . C 3 -17.583 -24.924 -15.906 1 35.36 ? N6 ADP 1418 A 1 
HETATM 24 N N1 ADP . . . C 3 -17.057 -26.729 -17.377 1 35.58 ? N1 ADP 1418 A 1 
HETATM 25 C C2 ADP . . . C 3 -16.352 -27.275 -18.376 1 35.24 ? C2 ADP 1418 A 1 
HETATM 26 N N3 ADP . . . C 3 -15.397 -26.613 -19.044 1 35.11 ? N3 ADP 1418 A 1 
HETATM 27 C C4 ADP . . . C 3 -15.066 -25.346 -18.702 1 36.78 ? C4 ADP 1418 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           27 
#