data_2XJ0 # _model_server_result.job_id br4i8nOnPL94dzDsuMHGZA _model_server_result.datetime_utc '2024-11-24 17:46:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1307}' # _entry.id 2XJ0 # _exptl.entry_id 2XJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.149 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(E)-3-(2-AMINO-PYRIDINE-5YL)-ACRYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XJ0 _cell.length_a 96.239 _cell.length_b 96.239 _cell.length_c 80.457 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N3 O2' _chem_comp.formula_weight 165.149 _chem_comp.id XJ0 _chem_comp.mon_nstd_flag . _chem_comp.name '(E)-3-(2-AMINO-PYRIDINE-5YL)-ACRYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2E)-3-(2-AMINOPYRIMIDIN-5-YL)PROP-2-ENOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OB C XJ0 doub 376 n n C OA XJ0 sing 377 n n C CA XJ0 sing 378 n n CA CB XJ0 doub 379 n n CB CG XJ0 sing 380 e n CG CD XJ0 sing 381 n y CG C10 XJ0 doub 382 n y CD NE XJ0 doub 383 n y NE CZ XJ0 sing 384 n y CZ NH2 XJ0 sing 385 n n CZ NH1 XJ0 doub 386 n y NH1 C10 XJ0 sing 387 n y OA HA XJ0 sing 388 n n CA HB XJ0 sing 389 n n CB HC XJ0 sing 390 n n CD HD XJ0 sing 391 n n C10 H10 XJ0 sing 392 n n NH2 HH21 XJ0 sing 393 n n NH2 HH22 XJ0 sing 394 n n # _atom_sites.entry_id 2XJ0 _atom_sites.fract_transf_matrix[1][1] 0.010391 _atom_sites.fract_transf_matrix[1][2] 0.005999 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XJ0 A 1 1307 1307 XJ0 XJ0 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OB XJ0 . . . B 2 -20.694 -30.691 0.549 1 69.89 ? OB XJ0 1307 A 1 HETATM 2 C C XJ0 . . . B 2 -21.106 -31.706 1.152 1 69.33 ? C XJ0 1307 A 1 HETATM 3 O OA XJ0 . . . B 2 -21.304 -31.757 2.386 1 68.6 ? OA XJ0 1307 A 1 HETATM 4 C CA XJ0 . . . B 2 -21.36 -32.847 0.4 1 64.58 ? CA XJ0 1307 A 1 HETATM 5 C CB XJ0 . . . B 2 -21.824 -34.002 1.019 1 60.74 ? CB XJ0 1307 A 1 HETATM 6 C CG XJ0 . . . B 2 -22.093 -35.17 0.312 1 56.95 ? CG XJ0 1307 A 1 HETATM 7 C CD XJ0 . . . B 2 -21.916 -35.26 -1.065 1 54.63 ? CD XJ0 1307 A 1 HETATM 8 N NE XJ0 . . . B 2 -22.185 -36.393 -1.69 1 52.23 ? NE XJ0 1307 A 1 HETATM 9 C CZ XJ0 . . . B 2 -22.633 -37.465 -1.018 1 52.88 ? CZ XJ0 1307 A 1 HETATM 10 N NH2 XJ0 . . . B 2 -22.902 -38.59 -1.674 1 48.26 ? NH2 XJ0 1307 A 1 HETATM 11 N NH1 XJ0 . . . B 2 -22.812 -37.404 0.31 1 48.63 ? NH1 XJ0 1307 A 1 HETATM 12 C C10 XJ0 . . . B 2 -22.555 -36.296 0.983 1 56.75 ? C10 XJ0 1307 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #