data_2XJ1 # _model_server_result.job_id kpTzoTp9D9Sp1MjkqNGu1w _model_server_result.datetime_utc '2024-11-28 10:33:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1307}' # _entry.id 2XJ1 # _exptl.entry_id 2XJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.404 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-3-(3-{6-[(TRANS-4-AMINOCYCLOHEXYL)AMINO]PYRAZIN-2-YL}PHENYL)PROP-2-ENOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XJ1 _cell.length_a 95.75 _cell.length_b 95.75 _cell.length_c 80.932 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 248 A SER 260 1_555 A N SEP 249 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C SEP 249 A SEP 261 1_555 A N GLU 250 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C19 H22 N4 O2' _chem_comp.formula_weight 338.404 _chem_comp.id XJ1 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-3-(3-{6-[(TRANS-4-AMINOCYCLOHEXYL)AMINO]PYRAZIN-2-YL}PHENYL)PROP-2-ENOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 XJ1 sing 394 n n C3 C2 XJ1 sing 395 n n C4 C5 XJ1 sing 396 n n C5 N8 XJ1 sing 397 n n C5 C6 XJ1 sing 398 n n C6 C7 XJ1 sing 399 n n C7 C2 XJ1 sing 400 n n C2 N1 XJ1 sing 401 n n N1 C9 XJ1 sing 402 n n C9 N10 XJ1 doub 403 n y C9 C14 XJ1 sing 404 n y N10 C11 XJ1 sing 405 n y C14 N13 XJ1 doub 406 n y N13 C12 XJ1 sing 407 n y C12 C11 XJ1 doub 408 n y C11 C15 XJ1 sing 409 n y C15 C16 XJ1 sing 410 n y C15 C20 XJ1 doub 411 n y C16 C17 XJ1 doub 412 n y C20 C19 XJ1 sing 413 n y C19 C18 XJ1 doub 414 n y C18 C17 XJ1 sing 415 n y C17 C21 XJ1 sing 416 n n C21 C22 XJ1 doub 417 n n C22 C23 XJ1 sing 418 n n C23 O25 XJ1 doub 419 n n C23 O24 XJ1 sing 420 n n C3 H31C XJ1 sing 421 n n C3 H32C XJ1 sing 422 n n C4 H41C XJ1 sing 423 n n C4 H42C XJ1 sing 424 n n C2 H2 XJ1 sing 425 n n C5 H5 XJ1 sing 426 n n N8 H81N XJ1 sing 427 n n N8 H82N XJ1 sing 428 n n C6 H61C XJ1 sing 429 n n C6 H62C XJ1 sing 430 n n C7 H71C XJ1 sing 431 n n C7 H72C XJ1 sing 432 n n N1 H1 XJ1 sing 433 n n C14 H14 XJ1 sing 434 n n C12 H12 XJ1 sing 435 n n C16 H16 XJ1 sing 436 e n C20 H20 XJ1 sing 437 n n C19 H19 XJ1 sing 438 n n C18 H18 XJ1 sing 439 n n C21 H21 XJ1 sing 440 n n C22 H22 XJ1 sing 441 n n O24 H24 XJ1 sing 442 n n # _atom_sites.entry_id 2XJ1 _atom_sites.fract_transf_matrix[1][1] 0.010444 _atom_sites.fract_transf_matrix[1][2] 0.00603 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XJ1 A 1 1307 1307 XJ1 XJ1 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 XJ1 . . . B 2 -20.482 -32.17 -4.756 1 53.45 ? C3 XJ1 1307 A 1 HETATM 2 C C4 XJ1 . . . B 2 -20.709 -30.643 -4.742 1 56.59 ? C4 XJ1 1307 A 1 HETATM 3 C C5 XJ1 . . . B 2 -21.646 -30.235 -3.591 1 56.27 ? C5 XJ1 1307 A 1 HETATM 4 N N8 XJ1 . . . B 2 -21.883 -28.774 -3.57 1 58.5 ? N8 XJ1 1307 A 1 HETATM 5 C C6 XJ1 . . . B 2 -22.964 -30.99 -3.754 1 55.78 ? C6 XJ1 1307 A 1 HETATM 6 C C7 XJ1 . . . B 2 -22.771 -32.52 -3.811 1 53.8 ? C7 XJ1 1307 A 1 HETATM 7 C C2 XJ1 . . . B 2 -21.826 -32.908 -4.949 1 59.94 ? C2 XJ1 1307 A 1 HETATM 8 N N1 XJ1 . . . B 2 -21.593 -34.368 -5.088 1 44.99 ? N1 XJ1 1307 A 1 HETATM 9 C C9 XJ1 . . . B 2 -22.116 -35.422 -4.448 1 50.64 ? C9 XJ1 1307 A 1 HETATM 10 N N10 XJ1 . . . B 2 -22.08 -35.519 -3.103 1 49.16 ? N10 XJ1 1307 A 1 HETATM 11 C C14 XJ1 . . . B 2 -22.633 -36.488 -5.19 1 41.95 ? C14 XJ1 1307 A 1 HETATM 12 N N13 XJ1 . . . B 2 -23.101 -37.565 -4.562 1 50.16 ? N13 XJ1 1307 A 1 HETATM 13 C C12 XJ1 . . . B 2 -23.091 -37.652 -3.221 1 45.93 ? C12 XJ1 1307 A 1 HETATM 14 C C11 XJ1 . . . B 2 -22.551 -36.612 -2.453 1 44.53 ? C11 XJ1 1307 A 1 HETATM 15 C C15 XJ1 . . . B 2 -22.537 -36.625 -1.033 1 42.03 ? C15 XJ1 1307 A 1 HETATM 16 C C16 XJ1 . . . B 2 -22.362 -35.414 -0.359 1 40.91 ? C16 XJ1 1307 A 1 HETATM 17 C C20 XJ1 . . . B 2 -22.736 -37.777 -0.268 1 45.42 ? C20 XJ1 1307 A 1 HETATM 18 C C19 XJ1 . . . B 2 -22.745 -37.709 1.14 1 42.38 ? C19 XJ1 1307 A 1 HETATM 19 C C18 XJ1 . . . B 2 -22.559 -36.485 1.782 1 37.27 ? C18 XJ1 1307 A 1 HETATM 20 C C17 XJ1 . . . B 2 -22.347 -35.327 1.032 1 39.36 ? C17 XJ1 1307 A 1 HETATM 21 C C21 XJ1 . . . B 2 -22.19 -34.087 1.665 1 34.69 ? C21 XJ1 1307 A 1 HETATM 22 C C22 XJ1 . . . B 2 -21.483 -32.992 1.162 1 42.04 ? C22 XJ1 1307 A 1 HETATM 23 C C23 XJ1 . . . B 2 -21.424 -31.788 1.882 1 42.06 ? C23 XJ1 1307 A 1 HETATM 24 O O25 XJ1 . . . B 2 -20.768 -30.865 1.376 1 47.08 ? O25 XJ1 1307 A 1 HETATM 25 O O24 XJ1 . . . B 2 -22.035 -31.67 2.976 1 50.07 ? O24 XJ1 1307 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 471 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #