data_2XJ2 # _model_server_result.job_id mpjDSF4RqpYQwpUJ1djbLw _model_server_result.datetime_utc '2024-11-28 10:51:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xj2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 2XJ2 # _exptl.entry_id 2XJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.404 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-3-{3-[6-(4-methyl-1,4-diazepan-1-yl)pyrazin-2-yl]phenyl}prop-2-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XJ2 _cell.length_a 96.167 _cell.length_b 96.167 _cell.length_c 80.785 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 248 A SER 260 1_555 A N SEP 249 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C SEP 249 A SEP 261 1_555 A N GLU 250 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C19 H22 N4 O2' _chem_comp.formula_weight 338.404 _chem_comp.id 985 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-3-{3-[6-(4-methyl-1,4-diazepan-1-yl)pyrazin-2-yl]phenyl}prop-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C1 985 sing 1 n y C1 N2 985 doub 2 n y C1 C6 985 sing 3 n y N2 C3 985 sing 4 n y C3 N1 985 sing 5 n n C3 C4 985 doub 6 n y N5 C4 985 sing 7 n y C4 H4 985 sing 8 n n C6 N5 985 doub 9 n y C6 H6 985 sing 10 n n C2 N1 985 sing 11 n n N1 C7 985 sing 12 n n C11 C2 985 sing 13 n n C2 H2 985 sing 14 n n C2 H2A 985 sing 15 n n C11 N3 985 sing 16 n n C11 H11 985 sing 17 n n C11 H11A 985 sing 18 n n C8 N3 985 sing 19 n n N3 C5 985 sing 20 n n C5 C14 985 sing 21 n n C5 H5 985 sing 22 n n C5 H5A 985 sing 23 n n C7 C14 985 sing 24 n n C14 H14 985 sing 25 n n C14 H14A 985 sing 26 n n C7 H7 985 sing 27 n n C7 H7A 985 sing 28 n n C8 H8 985 sing 29 n n C8 H8A 985 sing 30 n n C8 H8B 985 sing 31 n n C10 C16 985 doub 32 n y C10 C15 985 sing 33 n y C10 H10 985 sing 34 n n C16 C12 985 sing 35 n y C16 H16 985 sing 36 n n C12 C13 985 doub 37 n y C12 H12 985 sing 38 n n C17 C13 985 sing 39 n y C15 C17 985 doub 40 n y C17 H17 985 sing 41 n n C18 C15 985 sing 42 n n C18 C19 985 doub 43 e n C18 H18 985 sing 44 n n C9 C19 985 sing 45 n n C19 H19 985 sing 46 n n O2 C9 985 doub 47 n n C9 O1 985 sing 48 n n O1 HO1 985 sing 49 n n # _atom_sites.entry_id 2XJ2 _atom_sites.fract_transf_matrix[1][1] 0.010399 _atom_sites.fract_transf_matrix[1][2] 0.006004 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 985 A 1 1001 1001 985 985 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . C 3 HOH A 109 2109 2109 HOH HOH . C 3 HOH A 110 2110 2110 HOH HOH . C 3 HOH A 111 2111 2111 HOH HOH . C 3 HOH A 112 2112 2112 HOH HOH . C 3 HOH A 113 2113 2113 HOH HOH . C 3 HOH A 114 2114 2114 HOH HOH . C 3 HOH A 115 2115 2115 HOH HOH . C 3 HOH A 116 2116 2116 HOH HOH . C 3 HOH A 117 2117 2117 HOH HOH . C 3 HOH A 118 2118 2118 HOH HOH . C 3 HOH A 119 2119 2119 HOH HOH . C 3 HOH A 120 2120 2120 HOH HOH . C 3 HOH A 121 2121 2121 HOH HOH . C 3 HOH A 122 2122 2122 HOH HOH . C 3 HOH A 123 2123 2123 HOH HOH . C 3 HOH A 124 2124 2124 HOH HOH . C 3 HOH A 125 2125 2125 HOH HOH . C 3 HOH A 126 2126 2126 HOH HOH . C 3 HOH A 127 2127 2127 HOH HOH . C 3 HOH A 128 2128 2128 HOH HOH . C 3 HOH A 129 2129 2129 HOH HOH . C 3 HOH A 130 2130 2130 HOH HOH . C 3 HOH A 131 2131 2131 HOH HOH . C 3 HOH A 132 2132 2132 HOH HOH . C 3 HOH A 133 2133 2133 HOH HOH . C 3 HOH A 134 2134 2134 HOH HOH . C 3 HOH A 135 2135 2135 HOH HOH . C 3 HOH A 136 2136 2136 HOH HOH . C 3 HOH A 137 2137 2137 HOH HOH . C 3 HOH A 138 2138 2138 HOH HOH . C 3 HOH A 139 2139 2139 HOH HOH . C 3 HOH A 140 2140 2140 HOH HOH . C 3 HOH A 141 2141 2141 HOH HOH . C 3 HOH A 142 2142 2142 HOH HOH . C 3 HOH A 143 2143 2143 HOH HOH . C 3 HOH A 144 2144 2144 HOH HOH . C 3 HOH A 145 2145 2145 HOH HOH . C 3 HOH A 146 2146 2146 HOH HOH . C 3 HOH A 147 2147 2147 HOH HOH . C 3 HOH A 148 2148 2148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 985 . . . B 2 -22.547 -36.67 -2.528 1 14.32 ? C1 985 1001 A 1 HETATM 2 N N2 985 . . . B 2 -21.962 -35.64 -3.169 1 16.51 ? N2 985 1001 A 1 HETATM 3 C C3 985 . . . B 2 -21.953 -35.517 -4.508 1 17.46 ? C3 985 1001 A 1 HETATM 4 C C4 985 . . . B 2 -22.613 -36.485 -5.264 1 15.86 ? C4 985 1001 A 1 HETATM 5 N N5 985 . . . B 2 -23.205 -37.501 -4.637 1 21.46 ? N5 985 1001 A 1 HETATM 6 C C6 985 . . . B 2 -23.209 -37.618 -3.307 1 16.79 ? C6 985 1001 A 1 HETATM 7 N N1 985 . . . B 2 -21.328 -34.468 -5.071 1 17.86 ? N1 985 1001 A 1 HETATM 8 C C2 985 . . . B 2 -20.486 -33.619 -4.206 1 21.65 ? C2 985 1001 A 1 HETATM 9 C C11 985 . . . B 2 -21.322 -32.471 -3.589 1 18.27 ? C11 985 1001 A 1 HETATM 10 N N3 985 . . . B 2 -22.368 -31.897 -4.481 1 20.96 ? N3 985 1001 A 1 HETATM 11 C C5 985 . . . B 2 -21.932 -31.714 -5.885 1 21.7 ? C5 985 1001 A 1 HETATM 12 C C14 985 . . . B 2 -22.392 -32.91 -6.752 1 17.7 ? C14 985 1001 A 1 HETATM 13 C C7 985 . . . B 2 -21.523 -34.174 -6.519 1 23.63 ? C7 985 1001 A 1 HETATM 14 C C8 985 . . . B 2 -22.747 -30.568 -3.956 1 17.57 ? C8 985 1001 A 1 HETATM 15 C C10 985 . . . B 2 -22.775 -36.637 1.68 1 13.41 ? C10 985 1001 A 1 HETATM 16 C C16 985 . . . B 2 -22.937 -37.838 0.992 1 14.32 ? C16 985 1001 A 1 HETATM 17 C C12 985 . . . B 2 -22.851 -37.867 -0.4 1 15.22 ? C12 985 1001 A 1 HETATM 18 C C13 985 . . . B 2 -22.577 -36.707 -1.118 1 13.05 ? C13 985 1001 A 1 HETATM 19 C C17 985 . . . B 2 -22.437 -35.509 -0.409 1 14.2 ? C17 985 1001 A 1 HETATM 20 C C15 985 . . . B 2 -22.502 -35.463 0.981 1 13.41 ? C15 985 1001 A 1 HETATM 21 C C18 985 . . . B 2 -22.378 -34.25 1.67 1 11.08 ? C18 985 1001 A 1 HETATM 22 C C19 985 . . . B 2 -21.715 -33.119 1.195 1 11.48 ? C19 985 1001 A 1 HETATM 23 C C9 985 . . . B 2 -21.683 -31.934 1.942 1 16.14 ? C9 985 1001 A 1 HETATM 24 O O1 985 . . . B 2 -21.061 -30.972 1.456 1 14.64 ? O1 985 1001 A 1 HETATM 25 O O2 985 . . . B 2 -22.279 -31.874 3.046 1 16.33 ? O2 985 1001 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #