data_2XJA # _model_server_result.job_id lz1CKB235aQKFQqGM8LbyQ _model_server_result.datetime_utc '2024-11-24 20:00:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1535}' # _entry.id 2XJA # _exptl.entry_id 2XJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 111.32 _cell.angle_beta 91.42 _cell.angle_gamma 92.9 _cell.entry_id 2XJA _cell.length_a 75.04 _cell.length_b 76.32 _cell.length_c 81.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,W 1 1 B,I,J,K,L,M,X 2 1 C,N,O,P,Q,Y 3 1 D,R,S,T,U,V,Z 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N ? 3 Q N N ? 3 R N N ? 3 T N N ? 3 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 261 A ALA 261 1_555 A N KCX 262 A KCX 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C KCX 262 A KCX 262 1_555 A N ALA 263 A ALA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C ALA 261 B ALA 261 1_555 B N KCX 262 B KCX 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C KCX 262 B KCX 262 1_555 B N ALA 263 B ALA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale5 C C ALA 261 C ALA 261 1_555 C N KCX 262 C KCX 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 C C KCX 262 C KCX 262 1_555 C N ALA 263 C ALA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 D C ALA 261 D ALA 261 1_555 D N KCX 262 D KCX 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 D C KCX 262 D KCX 262 1_555 D N ALA 263 D ALA 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OG1 THR 158 A THR 158 1_555 F MG MG . A MG 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 A OG1 THR 180 A THR 180 1_555 F MG MG . A MG 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 A OE1 GLU 220 A GLU 220 1_555 F MG MG . A MG 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc4 A NE2 HIS 248 A HIS 248 1_555 G MG MG . A MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc5 E O3B ADP . A ADP 1533 1_555 F MG MG . A MG 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc6 F MG MG . A MG 1534 1_555 W O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc7 G MG MG . A MG 1535 1_555 H O21 UAG . A UAG 1536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc8 B O GLY 140 B GLY 140 1_555 I MG MG . B MG 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc9 B OG1 THR 158 B THR 158 1_555 K MG MG . B MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc10 B OG1 THR 180 B THR 180 1_555 K MG MG . B MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc11 B OE1 GLU 220 B GLU 220 1_555 K MG MG . B MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc12 B NE2 HIS 248 B HIS 248 1_555 M MG MG . B MG 1537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc13 I MG MG . B MG 1533 1_555 D OD1 ASP 215 D ASP 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc14 J O1B ADP . B ADP 1534 1_555 K MG MG . B MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc15 J O3B ADP . B ADP 1534 1_555 K MG MG . B MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc16 J PB ADP . B ADP 1534 1_555 K MG MG . B MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc17 K MG MG . B MG 1535 1_555 X O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc18 L O21 UAG . B UAG 1536 1_555 M MG MG . B MG 1537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc19 C OG1 THR 158 C THR 158 1_555 O MG MG . C MG 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc20 C OG1 THR 180 C THR 180 1_555 O MG MG . C MG 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc21 C OE1 GLU 220 C GLU 220 1_555 O MG MG . C MG 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc22 C NE2 HIS 248 C HIS 248 1_555 Q MG MG . C MG 1536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc23 N O3B ADP . C ADP 1533 1_555 O MG MG . C MG 1534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc24 O MG MG . C MG 1534 1_555 Y O HOH . C HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc25 P O21 UAG . C UAG 1535 1_555 Q MG MG . C MG 1536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc26 D OG1 THR 158 D THR 158 1_555 T MG MG . D MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc27 D OG1 THR 180 D THR 180 1_555 T MG MG . D MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc28 D OE1 GLU 220 D GLU 220 1_555 T MG MG . D MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc29 D NE2 HIS 248 D HIS 248 1_555 V MG MG . D MG 1537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc30 D OD1 ASP 448 D ASP 448 1_555 R MG MG . D MG 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc31 D O GLY 502 D GLY 502 1_555 R MG MG . D MG 1533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc32 S O3B ADP . D ADP 1534 1_555 T MG MG . D MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc33 S PB ADP . D ADP 1534 1_555 T MG MG . D MG 1535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc34 T MG MG . D MG 1535 1_555 Z O HOH . D HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc35 U O21 UAG . D UAG 1536 1_555 V MG MG . D MG 1537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2XJA _atom_sites.fract_transf_matrix[1][1] 0.013326 _atom_sites.fract_transf_matrix[1][2] 0.000675 _atom_sites.fract_transf_matrix[1][3] 0.00062 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01312 _atom_sites.fract_transf_matrix[2][3] 0.00515 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 1533 1533 ADP ADP . F 3 MG A 1 1534 1534 MG MG . G 3 MG A 1 1535 1535 MG MG . H 4 UAG A 1 1536 1536 UAG UAG . I 3 MG B 1 1533 1533 MG MG . J 2 ADP B 1 1534 1534 ADP ADP . K 3 MG B 1 1535 1535 MG MG . L 4 UAG B 1 1536 1536 UAG UAG . M 3 MG B 1 1537 1537 MG MG . N 2 ADP C 1 1533 1533 ADP ADP . O 3 MG C 1 1534 1534 MG MG . P 4 UAG C 1 1535 1535 UAG UAG . Q 3 MG C 1 1536 1536 MG MG . R 3 MG D 1 1533 1533 MG MG . S 2 ADP D 1 1534 1534 ADP ADP . T 3 MG D 1 1535 1535 MG MG . U 4 UAG D 1 1536 1536 UAG UAG . V 3 MG D 1 1537 1537 MG MG . W 5 HOH A 1 2001 2001 HOH HOH . X 5 HOH B 1 2001 2001 HOH HOH . Y 5 HOH C 1 2001 2001 HOH HOH . Z 5 HOH D 1 2001 2001 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id T _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.895 _atom_site.Cartn_y -4.375 _atom_site.Cartn_z 59.195 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1535 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #