data_2XJL # _model_server_result.job_id seXENqvX_Y5OWaJSWoSKtw _model_server_result.datetime_utc '2024-11-01 15:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":159}' # _entry.id 2XJL # _exptl.entry_id 2XJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XJL _cell.length_a 34.76 _cell.length_b 49.22 _cell.length_c 80.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 57 A CYS 57 1_555 A SG CYS 146 A CYS 146 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.969 ? disulf ? disulf2 A SG CYS 57 A CYS 57 1_555 A SG CYS 146 A CYS 146 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.889 ? metalc ? metalc1 A O ALA 1 A ALA 1 4_445 C ZN ZN . A ZN 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 A OE2 GLU 50 A GLU 50 1_555 D ZN ZN . A ZN 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc3 A OE2 GLU 51 A GLU 51 1_555 C ZN ZN . A ZN 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc4 A OD2 ASP 52 A ASP 52 1_555 D ZN ZN . A ZN 157 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc5 A OD2 ASP 52 A ASP 52 1_555 D ZN ZN . A ZN 157 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc6 A O ALA 55 A ALA 55 1_555 H NA NA . A NA 161 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc7 A ND1 HIS 63 A HIS 63 1_555 B ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 A ND1 HIS 71 A HIS 71 1_555 B ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc9 A ND1 HIS 80 A HIS 80 1_555 B ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc10 A OD1 ASP 83 A ASP 83 1_555 B ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc11 A OD2 ASP 90 A ASP 90 1_455 D ZN ZN . A ZN 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc12 A OD1 ASP 92 A ASP 92 1_455 D ZN ZN . A ZN 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc13 A OD2 ASP 96 A ASP 96 1_455 C ZN ZN . A ZN 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc14 A NE2 HIS 110 A HIS 110 1_555 E ZN ZN . A ZN 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc15 A O CYS 146 A CYS 146 1_555 H NA NA . A NA 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc16 A O GLN 153 A GLN 153 4_445 E ZN ZN . A ZN 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc17 A OXT GLN 153 A GLN 153 4_445 E ZN ZN . A ZN 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc18 C ZN ZN . A ZN 156 1_555 J O HOH . A HOH 2143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc19 E ZN ZN . A ZN 158 1_555 J O HOH . A HOH 2144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc20 G NA NA . A NA 160 1_555 J O HOH . A HOH 2130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc21 G NA NA . A NA 160 1_555 J O HOH . A HOH 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc22 H NA NA . A NA 161 1_555 J O HOH . A HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc23 H NA NA . A NA 161 1_555 J O HOH . A HOH 2057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 224 n n C1 C2 PEG sing 225 n n C1 H11 PEG sing 226 n n C1 H12 PEG sing 227 n n O1 HO1 PEG sing 228 n n C2 O2 PEG sing 229 n n C2 H21 PEG sing 230 n n C2 H22 PEG sing 231 n n O2 C3 PEG sing 232 n n C3 C4 PEG sing 233 n n C3 H31 PEG sing 234 n n C3 H32 PEG sing 235 n n C4 O4 PEG sing 236 n n C4 H41 PEG sing 237 n n C4 H42 PEG sing 238 n n O4 HO4 PEG sing 239 n n # _atom_sites.entry_id 2XJL _atom_sites.fract_transf_matrix[1][1] 0.028769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 155 155 ZN ZN . C 2 ZN A 1 156 156 ZN ZN . D 2 ZN A 1 157 157 ZN ZN . E 2 ZN A 1 158 158 ZN ZN . F 3 PEG A 1 159 159 PEG PEG . G 4 NA A 1 160 160 NA NA . H 4 NA A 1 161 161 NA NA . I 5 ACT A 1 162 162 ACT ACT . J 6 HOH A 1 2001 2001 HOH HOH . J 6 HOH A 2 2002 2002 HOH HOH . J 6 HOH A 3 2003 2003 HOH HOH . J 6 HOH A 4 2004 2004 HOH HOH . J 6 HOH A 5 2005 2005 HOH HOH . J 6 HOH A 6 2006 2006 HOH HOH . J 6 HOH A 7 2007 2007 HOH HOH . J 6 HOH A 8 2008 2008 HOH HOH . J 6 HOH A 9 2009 2009 HOH HOH . J 6 HOH A 10 2010 2010 HOH HOH . J 6 HOH A 11 2011 2011 HOH HOH . J 6 HOH A 12 2012 2012 HOH HOH . J 6 HOH A 13 2013 2013 HOH HOH . J 6 HOH A 14 2014 2014 HOH HOH . J 6 HOH A 15 2015 2015 HOH HOH . J 6 HOH A 16 2016 2016 HOH HOH . J 6 HOH A 17 2017 2017 HOH HOH . J 6 HOH A 18 2018 2018 HOH HOH . J 6 HOH A 19 2019 2019 HOH HOH . J 6 HOH A 20 2020 2020 HOH HOH . J 6 HOH A 21 2021 2021 HOH HOH . J 6 HOH A 22 2022 2022 HOH HOH . J 6 HOH A 23 2023 2023 HOH HOH . J 6 HOH A 24 2024 2024 HOH HOH . J 6 HOH A 25 2025 2025 HOH HOH . J 6 HOH A 26 2026 2026 HOH HOH . J 6 HOH A 27 2027 2027 HOH HOH . J 6 HOH A 28 2028 2028 HOH HOH . J 6 HOH A 29 2029 2029 HOH HOH . J 6 HOH A 30 2030 2030 HOH HOH . J 6 HOH A 31 2031 2031 HOH HOH . J 6 HOH A 32 2032 2032 HOH HOH . J 6 HOH A 33 2033 2033 HOH HOH . J 6 HOH A 34 2034 2034 HOH HOH . J 6 HOH A 35 2035 2035 HOH HOH . J 6 HOH A 36 2036 2036 HOH HOH . J 6 HOH A 37 2037 2037 HOH HOH . J 6 HOH A 38 2038 2038 HOH HOH . J 6 HOH A 39 2039 2039 HOH HOH . J 6 HOH A 40 2040 2040 HOH HOH . J 6 HOH A 41 2041 2041 HOH HOH . J 6 HOH A 42 2042 2042 HOH HOH . J 6 HOH A 43 2043 2043 HOH HOH . J 6 HOH A 44 2044 2044 HOH HOH . J 6 HOH A 45 2045 2045 HOH HOH . J 6 HOH A 46 2046 2046 HOH HOH . J 6 HOH A 47 2047 2047 HOH HOH . J 6 HOH A 48 2048 2048 HOH HOH . J 6 HOH A 49 2049 2049 HOH HOH . J 6 HOH A 50 2050 2050 HOH HOH . J 6 HOH A 51 2051 2051 HOH HOH . J 6 HOH A 52 2052 2052 HOH HOH . J 6 HOH A 53 2053 2053 HOH HOH . J 6 HOH A 54 2054 2054 HOH HOH . J 6 HOH A 55 2055 2055 HOH HOH . J 6 HOH A 56 2056 2056 HOH HOH . J 6 HOH A 57 2057 2057 HOH HOH . J 6 HOH A 58 2058 2058 HOH HOH . J 6 HOH A 59 2059 2059 HOH HOH . J 6 HOH A 60 2060 2060 HOH HOH . J 6 HOH A 61 2061 2061 HOH HOH . J 6 HOH A 62 2062 2062 HOH HOH . J 6 HOH A 63 2063 2063 HOH HOH . J 6 HOH A 64 2064 2064 HOH HOH . J 6 HOH A 65 2065 2065 HOH HOH . J 6 HOH A 66 2066 2066 HOH HOH . J 6 HOH A 67 2067 2067 HOH HOH . J 6 HOH A 68 2068 2068 HOH HOH . J 6 HOH A 69 2069 2069 HOH HOH . J 6 HOH A 70 2070 2070 HOH HOH . J 6 HOH A 71 2071 2071 HOH HOH . J 6 HOH A 72 2072 2072 HOH HOH . J 6 HOH A 73 2073 2073 HOH HOH . J 6 HOH A 74 2074 2074 HOH HOH . J 6 HOH A 75 2075 2075 HOH HOH . J 6 HOH A 76 2076 2076 HOH HOH . J 6 HOH A 77 2077 2077 HOH HOH . J 6 HOH A 78 2078 2078 HOH HOH . J 6 HOH A 79 2079 2079 HOH HOH . J 6 HOH A 80 2080 2080 HOH HOH . J 6 HOH A 81 2081 2081 HOH HOH . J 6 HOH A 82 2082 2082 HOH HOH . J 6 HOH A 83 2083 2083 HOH HOH . J 6 HOH A 84 2084 2084 HOH HOH . J 6 HOH A 85 2085 2085 HOH HOH . J 6 HOH A 86 2086 2086 HOH HOH . J 6 HOH A 87 2087 2087 HOH HOH . J 6 HOH A 88 2088 2088 HOH HOH . J 6 HOH A 89 2089 2089 HOH HOH . J 6 HOH A 90 2090 2090 HOH HOH . J 6 HOH A 91 2091 2091 HOH HOH . J 6 HOH A 92 2092 2092 HOH HOH . J 6 HOH A 93 2093 2093 HOH HOH . J 6 HOH A 94 2094 2094 HOH HOH . J 6 HOH A 95 2095 2095 HOH HOH . J 6 HOH A 96 2096 2096 HOH HOH . J 6 HOH A 97 2097 2097 HOH HOH . J 6 HOH A 98 2098 2098 HOH HOH . J 6 HOH A 99 2099 2099 HOH HOH . J 6 HOH A 100 2100 2100 HOH HOH . J 6 HOH A 101 2101 2101 HOH HOH . J 6 HOH A 102 2102 2102 HOH HOH . J 6 HOH A 103 2103 2103 HOH HOH . J 6 HOH A 104 2104 2104 HOH HOH . J 6 HOH A 105 2105 2105 HOH HOH . J 6 HOH A 106 2106 2106 HOH HOH . J 6 HOH A 107 2107 2107 HOH HOH . J 6 HOH A 108 2108 2108 HOH HOH . J 6 HOH A 109 2109 2109 HOH HOH . J 6 HOH A 110 2110 2110 HOH HOH . J 6 HOH A 111 2111 2111 HOH HOH . J 6 HOH A 112 2112 2112 HOH HOH . J 6 HOH A 113 2113 2113 HOH HOH . J 6 HOH A 114 2114 2114 HOH HOH . J 6 HOH A 115 2115 2115 HOH HOH . J 6 HOH A 116 2116 2116 HOH HOH . J 6 HOH A 117 2117 2117 HOH HOH . J 6 HOH A 118 2118 2118 HOH HOH . J 6 HOH A 119 2119 2119 HOH HOH . J 6 HOH A 120 2120 2120 HOH HOH . J 6 HOH A 121 2121 2121 HOH HOH . J 6 HOH A 122 2122 2122 HOH HOH . J 6 HOH A 123 2123 2123 HOH HOH . J 6 HOH A 124 2124 2124 HOH HOH . J 6 HOH A 125 2125 2125 HOH HOH . J 6 HOH A 126 2126 2126 HOH HOH . J 6 HOH A 127 2127 2127 HOH HOH . J 6 HOH A 128 2128 2128 HOH HOH . J 6 HOH A 129 2129 2129 HOH HOH . J 6 HOH A 130 2130 2130 HOH HOH . J 6 HOH A 131 2131 2131 HOH HOH . J 6 HOH A 132 2132 2132 HOH HOH . J 6 HOH A 133 2133 2133 HOH HOH . J 6 HOH A 134 2134 2134 HOH HOH . J 6 HOH A 135 2135 2135 HOH HOH . J 6 HOH A 136 2136 2136 HOH HOH . J 6 HOH A 137 2137 2137 HOH HOH . J 6 HOH A 138 2138 2138 HOH HOH . J 6 HOH A 139 2139 2139 HOH HOH . J 6 HOH A 140 2140 2140 HOH HOH . J 6 HOH A 141 2141 2141 HOH HOH . J 6 HOH A 142 2142 2142 HOH HOH . J 6 HOH A 143 2143 2143 HOH HOH . J 6 HOH A 144 2144 2144 HOH HOH . J 6 HOH A 145 2145 2145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 3 -18.288 -12.884 18.888 1 46.07 ? C1 PEG 159 A 1 HETATM 2 O O1 PEG . . . F 3 -19.697 -13.104 19.06 1 45.77 ? O1 PEG 159 A 1 HETATM 3 C C2 PEG . . . F 3 -17.478 -13.69 19.904 1 46.27 ? C2 PEG 159 A 1 HETATM 4 O O2 PEG . . . F 3 -16.153 -13.148 20.054 1 46.06 ? O2 PEG 159 A 1 HETATM 5 C C3 PEG . . . F 3 -15.126 -14.132 20.236 1 46.29 ? C3 PEG 159 A 1 HETATM 6 C C4 PEG . . . F 3 -13.768 -13.588 19.806 1 46.22 ? C4 PEG 159 A 1 HETATM 7 O O4 PEG . . . F 3 -12.714 -14.43 20.29 1 46.8 ? O4 PEG 159 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #