data_2XK7 # _model_server_result.job_id SKuOO737k02FyX-7Tc5-Wg _model_server_result.datetime_utc '2024-12-21 11:46:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1280}' # _entry.id 2XK7 # _exptl.entry_id 2XK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 416.471 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,4R)-1-[3-amino-6-(3,4,5-trimethoxyphenyl)pyrazin-2-yl]-3-ethylpiperidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.61 _cell.angle_gamma 90 _cell.entry_id 2XK7 _cell.length_a 101.2 _cell.length_b 56.77 _cell.length_c 74.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N4 O5' _chem_comp.formula_weight 416.471 _chem_comp.id 30E _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,4R)-1-[3-amino-6-(3,4,5-trimethoxyphenyl)pyrazin-2-yl]-3-ethylpiperidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 30E sing 1 n n C02 C03 30E sing 2 n n C03 C04 30E sing 3 n n C03 C27 30E sing 4 n n C04 N05 30E sing 5 n n N05 C06 30E sing 6 n n N05 C25 30E sing 7 n n C06 N07 30E doub 8 n y C06 C23 30E sing 9 n y N07 C08 30E sing 10 n y C08 C09 30E sing 11 n y C08 C21 30E doub 12 n y C09 C10 30E sing 13 n y C09 C20 30E doub 14 n y C10 C11 30E doub 15 n y C11 O12 30E sing 16 n n C11 C14 30E sing 17 n y O12 C13 30E sing 18 n n C14 O15 30E sing 19 n n C14 C17 30E doub 20 n y O15 C16 30E sing 21 n n C17 O18 30E sing 22 n n C17 C20 30E sing 23 n y O18 C19 30E sing 24 n n C21 N22 30E sing 25 n y N22 C23 30E doub 26 n y C23 N24 30E sing 27 n n C25 C26 30E sing 28 n n C26 C27 30E sing 29 n n C27 C28 30E sing 30 n n C28 O29 30E doub 31 n n C28 O30 30E sing 32 n n C01 H011 30E sing 33 n n C01 H012 30E sing 34 n n C01 H013 30E sing 35 n n C02 H021 30E sing 36 n n C02 H022 30E sing 37 n n C03 H03 30E sing 38 n n C04 H041 30E sing 39 n n C04 H042 30E sing 40 n n C27 H27 30E sing 41 n n C25 H251 30E sing 42 n n C25 H252 30E sing 43 n n C21 H21 30E sing 44 n n C10 H10 30E sing 45 n n C20 H20 30E sing 46 n n C13 H131 30E sing 47 n n C13 H132 30E sing 48 n n C13 H133 30E sing 49 n n C16 H161 30E sing 50 n n C16 H162 30E sing 51 n n C16 H163 30E sing 52 n n C19 H191 30E sing 53 n n C19 H192 30E sing 54 n n C19 H193 30E sing 55 n n N24 H241 30E sing 56 n n N24 H242 30E sing 57 n n C26 H261 30E sing 58 n n C26 H262 30E sing 59 n n O30 H30 30E sing 60 n n # _atom_sites.entry_id 2XK7 _atom_sites.fract_transf_matrix[1][1] 0.009881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007612 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 30E A 1 1280 1280 30E 30E . C 3 CL A 1 1281 1281 CL CL . D 3 CL A 1 1282 1282 CL CL . E 3 CL A 1 1283 1283 CL CL . F 3 CL A 1 1284 1284 CL CL . G 3 CL A 1 1285 1285 CL CL . H 3 CL A 1 1286 1286 CL CL . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2012 2012 HOH HOH . I 4 HOH A 13 2013 2013 HOH HOH . I 4 HOH A 14 2014 2014 HOH HOH . I 4 HOH A 15 2015 2015 HOH HOH . I 4 HOH A 16 2016 2016 HOH HOH . I 4 HOH A 17 2017 2017 HOH HOH . I 4 HOH A 18 2018 2018 HOH HOH . I 4 HOH A 19 2019 2019 HOH HOH . I 4 HOH A 20 2020 2020 HOH HOH . I 4 HOH A 21 2021 2021 HOH HOH . I 4 HOH A 22 2022 2022 HOH HOH . I 4 HOH A 23 2023 2023 HOH HOH . I 4 HOH A 24 2024 2024 HOH HOH . I 4 HOH A 25 2025 2025 HOH HOH . I 4 HOH A 26 2026 2026 HOH HOH . I 4 HOH A 27 2027 2027 HOH HOH . I 4 HOH A 28 2028 2028 HOH HOH . I 4 HOH A 29 2029 2029 HOH HOH . I 4 HOH A 30 2030 2030 HOH HOH . I 4 HOH A 31 2031 2031 HOH HOH . I 4 HOH A 32 2032 2032 HOH HOH . I 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH A 34 2034 2034 HOH HOH . I 4 HOH A 35 2035 2035 HOH HOH . I 4 HOH A 36 2036 2036 HOH HOH . I 4 HOH A 37 2037 2037 HOH HOH . I 4 HOH A 38 2038 2038 HOH HOH . I 4 HOH A 39 2039 2039 HOH HOH . I 4 HOH A 40 2040 2040 HOH HOH . I 4 HOH A 41 2041 2041 HOH HOH . I 4 HOH A 42 2042 2042 HOH HOH . I 4 HOH A 43 2043 2043 HOH HOH . I 4 HOH A 44 2044 2044 HOH HOH . I 4 HOH A 45 2045 2045 HOH HOH . I 4 HOH A 46 2046 2046 HOH HOH . I 4 HOH A 47 2047 2047 HOH HOH . I 4 HOH A 48 2048 2048 HOH HOH . I 4 HOH A 49 2049 2049 HOH HOH . I 4 HOH A 50 2050 2050 HOH HOH . I 4 HOH A 51 2051 2051 HOH HOH . I 4 HOH A 52 2052 2052 HOH HOH . I 4 HOH A 53 2053 2053 HOH HOH . I 4 HOH A 54 2054 2054 HOH HOH . I 4 HOH A 55 2055 2055 HOH HOH . I 4 HOH A 56 2056 2056 HOH HOH . I 4 HOH A 57 2057 2057 HOH HOH . I 4 HOH A 58 2058 2058 HOH HOH . I 4 HOH A 59 2059 2059 HOH HOH . I 4 HOH A 60 2060 2060 HOH HOH . I 4 HOH A 61 2061 2061 HOH HOH . I 4 HOH A 62 2062 2062 HOH HOH . I 4 HOH A 63 2063 2063 HOH HOH . I 4 HOH A 64 2064 2064 HOH HOH . I 4 HOH A 65 2065 2065 HOH HOH . I 4 HOH A 66 2066 2066 HOH HOH . I 4 HOH A 67 2067 2067 HOH HOH . I 4 HOH A 68 2068 2068 HOH HOH . I 4 HOH A 69 2069 2069 HOH HOH . I 4 HOH A 70 2070 2070 HOH HOH . I 4 HOH A 71 2071 2071 HOH HOH . I 4 HOH A 72 2072 2072 HOH HOH . I 4 HOH A 73 2073 2073 HOH HOH . I 4 HOH A 74 2074 2074 HOH HOH . I 4 HOH A 75 2075 2075 HOH HOH . I 4 HOH A 76 2076 2076 HOH HOH . I 4 HOH A 77 2077 2077 HOH HOH . I 4 HOH A 78 2078 2078 HOH HOH . I 4 HOH A 79 2079 2079 HOH HOH . I 4 HOH A 80 2080 2080 HOH HOH . I 4 HOH A 81 2081 2081 HOH HOH . I 4 HOH A 82 2082 2082 HOH HOH . I 4 HOH A 83 2083 2083 HOH HOH . I 4 HOH A 84 2084 2084 HOH HOH . I 4 HOH A 85 2085 2085 HOH HOH . I 4 HOH A 86 2086 2086 HOH HOH . I 4 HOH A 87 2087 2087 HOH HOH . I 4 HOH A 88 2088 2088 HOH HOH . I 4 HOH A 89 2089 2089 HOH HOH . I 4 HOH A 90 2090 2090 HOH HOH . I 4 HOH A 91 2091 2091 HOH HOH . I 4 HOH A 92 2092 2092 HOH HOH . I 4 HOH A 93 2093 2093 HOH HOH . I 4 HOH A 94 2094 2094 HOH HOH . I 4 HOH A 95 2095 2095 HOH HOH . I 4 HOH A 96 2096 2096 HOH HOH . I 4 HOH A 97 2097 2097 HOH HOH . I 4 HOH A 98 2098 2098 HOH HOH . I 4 HOH A 99 2099 2099 HOH HOH . I 4 HOH A 100 2100 2100 HOH HOH . I 4 HOH A 101 2101 2101 HOH HOH . I 4 HOH A 102 2102 2102 HOH HOH . I 4 HOH A 103 2103 2103 HOH HOH . I 4 HOH A 104 2104 2104 HOH HOH . I 4 HOH A 105 2105 2105 HOH HOH . I 4 HOH A 106 2106 2106 HOH HOH . I 4 HOH A 107 2107 2107 HOH HOH . I 4 HOH A 108 2108 2108 HOH HOH . I 4 HOH A 109 2109 2109 HOH HOH . I 4 HOH A 110 2110 2110 HOH HOH . I 4 HOH A 111 2111 2111 HOH HOH . I 4 HOH A 112 2112 2112 HOH HOH . I 4 HOH A 113 2113 2113 HOH HOH . I 4 HOH A 114 2114 2114 HOH HOH . I 4 HOH A 115 2115 2115 HOH HOH . I 4 HOH A 116 2116 2116 HOH HOH . I 4 HOH A 117 2117 2117 HOH HOH . I 4 HOH A 118 2118 2118 HOH HOH . I 4 HOH A 119 2119 2119 HOH HOH . I 4 HOH A 120 2120 2120 HOH HOH . I 4 HOH A 121 2121 2121 HOH HOH . I 4 HOH A 122 2122 2122 HOH HOH . I 4 HOH A 123 2123 2123 HOH HOH . I 4 HOH A 124 2124 2124 HOH HOH . I 4 HOH A 125 2125 2125 HOH HOH . I 4 HOH A 126 2126 2126 HOH HOH . I 4 HOH A 127 2127 2127 HOH HOH . I 4 HOH A 128 2128 2128 HOH HOH . I 4 HOH A 129 2129 2129 HOH HOH . I 4 HOH A 130 2130 2130 HOH HOH . I 4 HOH A 131 2131 2131 HOH HOH . I 4 HOH A 132 2132 2132 HOH HOH . I 4 HOH A 133 2133 2133 HOH HOH . I 4 HOH A 134 2134 2134 HOH HOH . I 4 HOH A 135 2135 2135 HOH HOH . I 4 HOH A 136 2136 2136 HOH HOH . I 4 HOH A 137 2137 2137 HOH HOH . I 4 HOH A 138 2138 2138 HOH HOH . I 4 HOH A 139 2139 2139 HOH HOH . I 4 HOH A 140 2140 2140 HOH HOH . I 4 HOH A 141 2141 2141 HOH HOH . I 4 HOH A 142 2142 2142 HOH HOH . I 4 HOH A 143 2143 2143 HOH HOH . I 4 HOH A 144 2144 2144 HOH HOH . I 4 HOH A 145 2145 2145 HOH HOH . I 4 HOH A 146 2146 2146 HOH HOH . I 4 HOH A 147 2147 2147 HOH HOH . I 4 HOH A 148 2148 2148 HOH HOH . I 4 HOH A 149 2149 2149 HOH HOH . I 4 HOH A 150 2150 2150 HOH HOH . I 4 HOH A 151 2151 2151 HOH HOH . I 4 HOH A 152 2152 2152 HOH HOH . I 4 HOH A 153 2153 2153 HOH HOH . I 4 HOH A 154 2154 2154 HOH HOH . I 4 HOH A 155 2155 2155 HOH HOH . I 4 HOH A 156 2156 2156 HOH HOH . I 4 HOH A 157 2157 2157 HOH HOH . I 4 HOH A 158 2158 2158 HOH HOH . I 4 HOH A 159 2159 2159 HOH HOH . I 4 HOH A 160 2160 2160 HOH HOH . I 4 HOH A 161 2161 2161 HOH HOH . I 4 HOH A 162 2162 2162 HOH HOH . I 4 HOH A 163 2163 2163 HOH HOH . I 4 HOH A 164 2164 2164 HOH HOH . I 4 HOH A 165 2165 2165 HOH HOH . I 4 HOH A 166 2166 2166 HOH HOH . I 4 HOH A 167 2167 2167 HOH HOH . I 4 HOH A 168 2168 2168 HOH HOH . I 4 HOH A 169 2169 2169 HOH HOH . I 4 HOH A 170 2170 2170 HOH HOH . I 4 HOH A 171 2171 2171 HOH HOH . I 4 HOH A 172 2172 2172 HOH HOH . I 4 HOH A 173 2173 2173 HOH HOH . I 4 HOH A 174 2174 2174 HOH HOH . I 4 HOH A 175 2175 2175 HOH HOH . I 4 HOH A 176 2176 2176 HOH HOH . I 4 HOH A 177 2177 2177 HOH HOH . I 4 HOH A 178 2178 2178 HOH HOH . I 4 HOH A 179 2179 2179 HOH HOH . I 4 HOH A 180 2180 2180 HOH HOH . I 4 HOH A 181 2181 2181 HOH HOH . I 4 HOH A 182 2182 2182 HOH HOH . I 4 HOH A 183 2183 2183 HOH HOH . I 4 HOH A 184 2184 2184 HOH HOH . I 4 HOH A 185 2185 2185 HOH HOH . I 4 HOH A 186 2186 2186 HOH HOH . I 4 HOH A 187 2187 2187 HOH HOH . I 4 HOH A 188 2188 2188 HOH HOH . I 4 HOH A 189 2189 2189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 30E . . . B 2 -26.598 22.787 -14.312 1 51.69 ? C01 30E 1280 A 1 HETATM 2 C C02 30E . . . B 2 -25.713 21.702 -13.696 1 53.91 ? C02 30E 1280 A 1 HETATM 3 C C03 30E . . . B 2 -24.702 21.01 -14.625 1 48.44 ? C03 30E 1280 A 1 HETATM 4 C C04 30E . . . B 2 -25.088 20.777 -16.092 1 38.3 ? C04 30E 1280 A 1 HETATM 5 N N05 30E . . . B 2 -24.813 22.005 -16.808 1 35.91 ? N05 30E 1280 A 1 HETATM 6 C C06 30E . . . B 2 -25.216 22.275 -18.225 1 29.37 ? C06 30E 1280 A 1 HETATM 7 N N07 30E . . . B 2 -25.849 21.213 -18.907 1 29.65 ? N07 30E 1280 A 1 HETATM 8 C C08 30E . . . B 2 -26.3 21.368 -20.22 1 31.3 ? C08 30E 1280 A 1 HETATM 9 C C09 30E . . . B 2 -26.871 20.243 -20.851 1 28.72 ? C09 30E 1280 A 1 HETATM 10 C C10 30E . . . B 2 -26.76 18.961 -20.167 1 27.95 ? C10 30E 1280 A 1 HETATM 11 C C11 30E . . . B 2 -27.306 17.742 -20.806 1 35.95 ? C11 30E 1280 A 1 HETATM 12 O O12 30E . . . B 2 -27.207 16.479 -20.186 1 40.57 ? O12 30E 1280 A 1 HETATM 13 C C13 30E . . . B 2 -26.695 16.354 -18.889 1 40.64 ? C13 30E 1280 A 1 HETATM 14 C C14 30E . . . B 2 -27.929 17.836 -22.118 1 31.34 ? C14 30E 1280 A 1 HETATM 15 O O15 30E . . . B 2 -28.406 16.655 -22.709 1 43.02 ? O15 30E 1280 A 1 HETATM 16 C C16 30E . . . B 2 -27.455 15.711 -23.16 1 43.38 ? C16 30E 1280 A 1 HETATM 17 C C17 30E . . . B 2 -28.004 19.11 -22.81 1 26.47 ? C17 30E 1280 A 1 HETATM 18 O O18 30E . . . B 2 -28.557 19.169 -24.098 1 34.16 ? O18 30E 1280 A 1 HETATM 19 C C19 30E . . . B 2 -28.836 20.402 -24.676 1 34.01 ? C19 30E 1280 A 1 HETATM 20 C C20 30E . . . B 2 -27.466 20.343 -22.172 1 25.33 ? C20 30E 1280 A 1 HETATM 21 C C21 30E . . . B 2 -26.109 22.61 -20.907 1 25.96 ? C21 30E 1280 A 1 HETATM 22 N N22 30E . . . B 2 -25.471 23.691 -20.21 1 25.38 ? N22 30E 1280 A 1 HETATM 23 C C23 30E . . . B 2 -25.034 23.551 -18.898 1 26.28 ? C23 30E 1280 A 1 HETATM 24 N N24 30E . . . B 2 -24.44 24.692 -18.233 1 28.46 ? N24 30E 1280 A 1 HETATM 25 C C25 30E . . . B 2 -23.774 22.942 -16.359 1 49.18 ? C25 30E 1280 A 1 HETATM 26 C C26 30E . . . B 2 -22.653 22.217 -15.581 1 43.02 ? C26 30E 1280 A 1 HETATM 27 C C27 30E . . . B 2 -23.2 21.325 -14.44 1 48.05 ? C27 30E 1280 A 1 HETATM 28 C C28 30E . . . B 2 -22.754 21.598 -13.011 1 58.89 ? C28 30E 1280 A 1 HETATM 29 O O29 30E . . . B 2 -23.177 20.92 -12.13 1 66.04 ? O29 30E 1280 A 1 HETATM 30 O O30 30E . . . B 2 -21.881 22.649 -12.727 1 61.77 ? O30 30E 1280 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #