data_2XK9 # _model_server_result.job_id 2zIAkYWF2XXjlyjyLx4H5g _model_server_result.datetime_utc '2024-12-21 18:54:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1511}' # _entry.id 2XK9 # _exptl.entry_id 2XK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.372 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(1E)-N-(N-hydroxycarbamimidoyl)ethanehydrazonoyl]phenyl}-7-nitro-1H-indole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XK9 _cell.length_a 90.985 _cell.length_b 90.985 _cell.length_c 93.42 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -62.28 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H17 N7 O4' _chem_comp.formula_weight 395.372 _chem_comp.id XK9 _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(1E)-N-(N-hydroxycarbamimidoyl)ethanehydrazonoyl]phenyl}-7-nitro-1H-indole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 N7 XK9 sing 376 n n N7 O2 XK9 doub 377 n n N7 C3 XK9 sing 378 n n C3 C2 XK9 sing 379 n y C3 C4 XK9 doub 380 n y C2 C1 XK9 doub 381 n y C4 N1 XK9 sing 382 n y C4 C5 XK9 sing 383 n y N1 C8 XK9 sing 384 n y C8 C7 XK9 doub 385 n y C8 C9 XK9 sing 386 n n C7 C5 XK9 sing 387 n y C5 C6 XK9 doub 388 n y C6 C1 XK9 sing 389 n y C9 O1 XK9 doub 390 n n C9 N2 XK9 sing 391 n n N2 C10 XK9 sing 392 n n C10 C15 XK9 sing 393 n y C10 C11 XK9 doub 394 n y C15 C14 XK9 doub 395 n y C14 C13 XK9 sing 396 n y C13 C12 XK9 doub 397 n y C13 C16 XK9 sing 398 n n C12 C11 XK9 sing 399 n y C16 C17 XK9 sing 400 n n C16 N3 XK9 doub 401 n n N3 N4 XK9 sing 402 n n N4 C18 XK9 sing 403 n n C18 N6 XK9 doub 404 n n C18 N5 XK9 sing 405 n n N5 OBC XK9 sing 406 n n C2 H2 XK9 sing 407 n n C1 H1 XK9 sing 408 n n N1 HA XK9 sing 409 n n C7 H7 XK9 sing 410 n n C6 H6 XK9 sing 411 e n N2 HB XK9 sing 412 n n C15 H15 XK9 sing 413 n n C11 H11 XK9 sing 414 n n C14 H14 XK9 sing 415 n n C12 H12 XK9 sing 416 n n C17 H171 XK9 sing 417 n n C17 H172 XK9 sing 418 n n C17 H173 XK9 sing 419 n n N4 H4 XK9 sing 420 n n N5 H5 XK9 sing 421 n n OBC HBC XK9 sing 422 n n N6 H6A XK9 sing 423 n n # _atom_sites.entry_id 2XK9 _atom_sites.fract_transf_matrix[1][1] 0.010991 _atom_sites.fract_transf_matrix[1][2] 0.006346 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XK9 A 1 1511 1511 XK9 XK9 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 XK9 . . . B 2 -49.425 16.017 -3.837 1 59.61 ? O3 XK9 1511 A 1 HETATM 2 N N7 XK9 . . . B 2 -48.575 17.121 -3.492 1 57.8 ? N7 XK9 1511 A 1 HETATM 3 O O2 XK9 . . . B 2 -48.652 17.613 -2.163 1 61 ? O2 XK9 1511 A 1 HETATM 4 C C3 XK9 . . . B 2 -47.714 17.681 -4.358 1 54.34 ? C3 XK9 1511 A 1 HETATM 5 C C2 XK9 . . . B 2 -47.055 18.857 -3.997 1 53.22 ? C2 XK9 1511 A 1 HETATM 6 C C4 XK9 . . . B 2 -47.453 17.109 -5.602 1 50.75 ? C4 XK9 1511 A 1 HETATM 7 N N1 XK9 . . . B 2 -47.929 16.036 -6.211 1 48 ? N1 XK9 1511 A 1 HETATM 8 C C8 XK9 . . . B 2 -47.331 15.956 -7.41 1 47.54 ? C8 XK9 1511 A 1 HETATM 9 C C7 XK9 . . . B 2 -46.506 16.991 -7.598 1 49.6 ? C7 XK9 1511 A 1 HETATM 10 C C5 XK9 . . . B 2 -46.551 17.721 -6.48 1 50.72 ? C5 XK9 1511 A 1 HETATM 11 C C6 XK9 . . . B 2 -45.911 18.899 -6.116 1 50.66 ? C6 XK9 1511 A 1 HETATM 12 C C1 XK9 . . . B 2 -46.158 19.468 -4.874 1 51.76 ? C1 XK9 1511 A 1 HETATM 13 C C9 XK9 . . . B 2 -47.615 14.855 -8.434 1 44.5 ? C9 XK9 1511 A 1 HETATM 14 O O1 XK9 . . . B 2 -48.507 14.033 -8.196 1 43.29 ? O1 XK9 1511 A 1 HETATM 15 N N2 XK9 . . . B 2 -46.865 14.901 -9.553 1 44.3 ? N2 XK9 1511 A 1 HETATM 16 C C10 XK9 . . . B 2 -47.023 14.095 -10.632 1 42.7 ? C10 XK9 1511 A 1 HETATM 17 C C15 XK9 . . . B 2 -46.213 14.293 -11.76 1 42.77 ? C15 XK9 1511 A 1 HETATM 18 C C14 XK9 . . . B 2 -46.371 13.515 -12.917 1 43.94 ? C14 XK9 1511 A 1 HETATM 19 C C13 XK9 . . . B 2 -47.37 12.522 -12.977 1 43 ? C13 XK9 1511 A 1 HETATM 20 C C12 XK9 . . . B 2 -48.174 12.348 -11.849 1 43.33 ? C12 XK9 1511 A 1 HETATM 21 C C11 XK9 . . . B 2 -48.01 13.128 -10.702 1 41.75 ? C11 XK9 1511 A 1 HETATM 22 C C16 XK9 . . . B 2 -47.544 11.741 -14.127 1 41.66 ? C16 XK9 1511 A 1 HETATM 23 C C17 XK9 . . . B 2 -48.186 10.365 -14.096 1 38.74 ? C17 XK9 1511 A 1 HETATM 24 N N3 XK9 . . . B 2 -47.137 12.231 -15.295 1 44.21 ? N3 XK9 1511 A 1 HETATM 25 N N4 XK9 . . . B 2 -47.212 11.626 -16.383 1 45.72 ? N4 XK9 1511 A 1 HETATM 26 C C18 XK9 . . . B 2 -46.791 12.245 -17.507 1 45.3 ? C18 XK9 1511 A 1 HETATM 27 N N6 XK9 . . . B 2 -46.868 11.69 -18.709 1 45.23 ? N6 XK9 1511 A 1 HETATM 28 N N5 XK9 . . . B 2 -46.284 13.457 -17.449 1 46.56 ? N5 XK9 1511 A 1 HETATM 29 O OBC XK9 . . . B 2 -45.865 14.068 -18.605 1 53.2 ? OBC XK9 1511 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #