data_2XKA # _model_server_result.job_id NtHZmG8fXGPLKLGyOZVrbQ _model_server_result.datetime_utc '2025-04-01 16:42:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":999}' # _entry.id 2XKA # _exptl.entry_id 2XKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XKA _cell.length_a 51.06 _cell.length_b 85.15 _cell.length_c 632.23 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,H,I 1 1 B,J,K 2 1 C,L,M 3 1 D,N,O 4 1 E,P,Q 5 1 F,R,S 6 1 G,T,U 7 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N ? 3 Q N N ? 3 S N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 32 A GLN 32 1_555 I MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 H O3G GSP . A GSP 900 1_555 I MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc3 H O1B GSP . A GSP 900 1_555 I MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc4 B OD2 ASP 64 B ASP 64 1_555 K MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc5 J O3G GSP . B GSP 900 1_555 K MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc6 J O1B GSP . B GSP 900 1_555 K MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc7 L O3G GSP . C GSP 900 1_555 M MG MG . C MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc8 L O1B GSP . C GSP 900 1_555 M MG MG . C MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc9 D OD2 ASP 64 D ASP 64 1_555 O MG MG . D MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc10 N O3G GSP . D GSP 900 1_555 O MG MG . D MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? metalc ? metalc11 N O1B GSP . D GSP 900 1_555 O MG MG . D MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc12 E OD2 ASP 64 E ASP 64 1_555 Q MG MG . E MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc13 P O3G GSP . E GSP 900 1_555 Q MG MG . E MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc14 P O1B GSP . E GSP 900 1_555 Q MG MG . E MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc15 F OD2 ASP 64 F ASP 64 1_555 S MG MG . F MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc16 R O3G GSP . F GSP 900 1_555 S MG MG . F MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc17 R O1B GSP . F GSP 900 1_555 S MG MG . F MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc18 G OE1 GLN 32 G GLN 32 1_555 U MG MG . G MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc19 T O1B GSP . G GSP 900 1_555 U MG MG . G MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc20 T O3G GSP . G GSP 900 1_555 U MG MG . G MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2XKA _atom_sites.fract_transf_matrix[1][1] 0.019585 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 GSP A 1 900 900 GSP GSP . I 3 MG A 1 999 999 MG MG . J 2 GSP B 1 900 900 GSP GSP . K 3 MG B 1 999 999 MG MG . L 2 GSP C 1 900 900 GSP GSP . M 3 MG C 1 999 999 MG MG . N 2 GSP D 1 900 900 GSP GSP . O 3 MG D 1 999 999 MG MG . P 2 GSP E 1 900 900 GSP GSP . Q 3 MG E 1 999 999 MG MG . R 2 GSP F 1 900 900 GSP GSP . S 3 MG F 1 999 999 MG MG . T 2 GSP G 1 900 900 GSP GSP . U 3 MG G 1 999 999 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id S _atom_site.label_entity_id 3 _atom_site.Cartn_x 31.712 _atom_site.Cartn_y -39.573 _atom_site.Cartn_z 213.181 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 999 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #