data_2XKB # _model_server_result.job_id 5Vaf0Pyp45xD4d6m_lp-8A _model_server_result.datetime_utc '2025-09-04 15:04:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":999}' # _entry.id 2XKB # _exptl.entry_id 2XKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.51 _cell.angle_gamma 90 _cell.entry_id 2XKB _cell.length_a 52.947 _cell.length_b 541.099 _cell.length_c 86.128 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 PISA monomeric 1 author_and_software_defined_assembly 9 PISA monomeric 1 author_and_software_defined_assembly 10 PISA monomeric 1 author_and_software_defined_assembly 11 PISA monomeric 1 author_and_software_defined_assembly 12 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,M,N 1 1 B,O,P 2 1 G,U,V 3 1 I,W,X 4 1 C,Q 5 1 D,R 6 1 E,S 7 1 F,T 8 1 J,Y 9 1 K,Z 10 1 L,AA 11 1 H 12 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 N N N ? 3 P N N ? 3 V N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 64 A ASP 64 1_555 N MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 M O1B GDP . A GDP 900 1_555 N MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc3 B OD2 ASP 64 B ASP 64 1_555 P MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc4 O O1B GDP . B GDP 900 1_555 P MG MG . B MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc5 G OD2 ASP 64 G ASP 64 1_555 V MG MG . G MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc6 U O1B GDP . G GDP 900 1_555 V MG MG . G MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc7 I OD2 ASP 64 I ASP 64 1_555 X MG MG . I MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc8 W O1B GDP . I GDP 900 1_555 X MG MG . I MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2XKB _atom_sites.fract_transf_matrix[1][1] 0.018887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000828 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.001848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 GDP A 1 900 900 GDP GDP . N 3 MG A 1 999 999 MG MG . O 2 GDP B 1 900 900 GDP GDP . P 3 MG B 1 999 999 MG MG . Q 2 GDP C 1 900 900 GDP GDP . R 2 GDP D 1 900 900 GDP GDP . S 2 GDP E 1 900 900 GDP GDP . T 2 GDP F 1 900 900 GDP GDP . U 2 GDP G 1 900 900 GDP GDP . V 3 MG G 1 999 999 MG MG . W 2 GDP I 1 900 900 GDP GDP . X 3 MG I 1 999 999 MG MG . Y 2 GDP J 1 900 900 GDP GDP . Z 2 GDP K 1 900 900 GDP GDP . AA 2 GDP L 1 900 900 GDP GDP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 3 _atom_site.Cartn_x -5.642 _atom_site.Cartn_y -76.101 _atom_site.Cartn_z 74.832 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 999 _atom_site.auth_asym_id I _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #