data_2XKD
#
_model_server_result.job_id            7jcDjjhpQ3GF8n7RgsPSCQ 
_model_server_result.datetime_utc      '2024-11-23 01:23:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xkd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1280}' 
#
_entry.id    2XKD 
#
_exptl.entry_id    2XKD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.382 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[3-amino-6-(3,4,5-trimethoxyphenyl)pyrazin-2-yl]benzoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          127.61 
_cell.angle_gamma         90 
_cell.entry_id            2XKD 
_cell.length_a            100.28 
_cell.length_b            57.06 
_cell.length_c            73.76 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XKD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H19 N3 O5' 
_chem_comp.formula_weight    381.382 
_chem_comp.id                T3M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[3-amino-6-(3,4,5-trimethoxyphenyl)pyrazin-2-yl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O26 C24 T3M sing 290 n n 
C24 O25 T3M doub 291 n n 
C24 C23 T3M sing 292 n n 
C23 C22 T3M sing 293 n y 
C23 C27 T3M doub 294 n y 
C22 C21 T3M doub 295 n y 
C21 C20 T3M sing 296 n y 
C27 C28 T3M sing 297 n y 
C28 C20 T3M doub 298 n y 
C20 C19 T3M sing 299 n y 
C19 N14 T3M doub 300 n y 
C19 C17 T3M sing 301 n y 
N14 C13 T3M sing 302 n y 
C17 N18 T3M sing 303 n n 
C17 N16 T3M doub 304 n y 
N16 C15 T3M sing 305 n y 
C15 C13 T3M doub 306 n y 
C13 C12 T3M sing 307 n y 
C12 C4 T3M sing 308 n y 
C12 C11 T3M doub 309 n y 
C4 C3 T3M doub 310 n y 
C11 C8 T3M sing 311 n y 
C8 O9 T3M sing 312 n n 
C8 C5 T3M doub 313 n y 
O9 C10 T3M sing 314 n n 
C5 O6 T3M sing 315 n n 
C5 C3 T3M sing 316 n y 
O6 C7 T3M sing 317 n n 
C3 O2 T3M sing 318 n n 
O2 C1 T3M sing 319 n n 
O26 H26 T3M sing 320 n n 
C22 H22 T3M sing 321 n n 
C27 H27 T3M sing 322 n n 
C21 H21 T3M sing 323 n n 
C28 H28 T3M sing 324 n n 
N18 H181 T3M sing 325 n n 
N18 H182 T3M sing 326 n n 
C15 H15 T3M sing 327 n n 
C4 H4 T3M sing 328 n n 
C11 H11 T3M sing 329 n n 
C10 H101 T3M sing 330 n n 
C10 H102 T3M sing 331 n n 
C10 H103 T3M sing 332 n n 
C7 H71C T3M sing 333 n n 
C7 H72C T3M sing 334 n n 
C7 H73C T3M sing 335 n n 
C1 H11C T3M sing 336 n n 
C1 H12C T3M sing 337 n n 
C1 H13C T3M sing 338 n n 
#
_atom_sites.entry_id                     2XKD 
_atom_sites.fract_transf_matrix[1][1]    0.009972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007682 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017525 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017114 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 T3M A 1 1280 1280 T3M T3M . 
C 3 CL A 1 1281 1281 CL CL . 
D 3 CL A 1 1282 1282 CL CL . 
E 3 CL A 1 1283 1283 CL CL . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
F 4 HOH A 24 2024 2024 HOH HOH . 
F 4 HOH A 25 2025 2025 HOH HOH . 
F 4 HOH A 26 2026 2026 HOH HOH . 
F 4 HOH A 27 2027 2027 HOH HOH . 
F 4 HOH A 28 2028 2028 HOH HOH . 
F 4 HOH A 29 2029 2029 HOH HOH . 
F 4 HOH A 30 2030 2030 HOH HOH . 
F 4 HOH A 31 2031 2031 HOH HOH . 
F 4 HOH A 32 2032 2032 HOH HOH . 
F 4 HOH A 33 2033 2033 HOH HOH . 
F 4 HOH A 34 2034 2034 HOH HOH . 
F 4 HOH A 35 2035 2035 HOH HOH . 
F 4 HOH A 36 2036 2036 HOH HOH . 
F 4 HOH A 37 2037 2037 HOH HOH . 
F 4 HOH A 38 2038 2038 HOH HOH . 
F 4 HOH A 39 2039 2039 HOH HOH . 
F 4 HOH A 40 2040 2040 HOH HOH . 
F 4 HOH A 41 2041 2041 HOH HOH . 
F 4 HOH A 42 2042 2042 HOH HOH . 
F 4 HOH A 43 2043 2043 HOH HOH . 
F 4 HOH A 44 2044 2044 HOH HOH . 
F 4 HOH A 45 2045 2045 HOH HOH . 
F 4 HOH A 46 2046 2046 HOH HOH . 
F 4 HOH A 47 2047 2047 HOH HOH . 
F 4 HOH A 48 2048 2048 HOH HOH . 
F 4 HOH A 49 2049 2049 HOH HOH . 
F 4 HOH A 50 2050 2050 HOH HOH . 
F 4 HOH A 51 2051 2051 HOH HOH . 
F 4 HOH A 52 2052 2052 HOH HOH . 
F 4 HOH A 53 2053 2053 HOH HOH . 
F 4 HOH A 54 2054 2054 HOH HOH . 
F 4 HOH A 55 2055 2055 HOH HOH . 
F 4 HOH A 56 2056 2056 HOH HOH . 
F 4 HOH A 57 2057 2057 HOH HOH . 
F 4 HOH A 58 2058 2058 HOH HOH . 
F 4 HOH A 59 2059 2059 HOH HOH . 
F 4 HOH A 60 2060 2060 HOH HOH . 
F 4 HOH A 61 2061 2061 HOH HOH . 
F 4 HOH A 62 2062 2062 HOH HOH . 
F 4 HOH A 63 2063 2063 HOH HOH . 
F 4 HOH A 64 2064 2064 HOH HOH . 
F 4 HOH A 65 2065 2065 HOH HOH . 
F 4 HOH A 66 2066 2066 HOH HOH . 
F 4 HOH A 67 2067 2067 HOH HOH . 
F 4 HOH A 68 2068 2068 HOH HOH . 
F 4 HOH A 69 2069 2069 HOH HOH . 
F 4 HOH A 70 2070 2070 HOH HOH . 
F 4 HOH A 71 2071 2071 HOH HOH . 
F 4 HOH A 72 2072 2072 HOH HOH . 
F 4 HOH A 73 2073 2073 HOH HOH . 
F 4 HOH A 74 2074 2074 HOH HOH . 
F 4 HOH A 75 2075 2075 HOH HOH . 
F 4 HOH A 76 2076 2076 HOH HOH . 
F 4 HOH A 77 2077 2077 HOH HOH . 
F 4 HOH A 78 2078 2078 HOH HOH . 
F 4 HOH A 79 2079 2079 HOH HOH . 
F 4 HOH A 80 2080 2080 HOH HOH . 
F 4 HOH A 81 2081 2081 HOH HOH . 
F 4 HOH A 82 2082 2082 HOH HOH . 
F 4 HOH A 83 2083 2083 HOH HOH . 
F 4 HOH A 84 2084 2084 HOH HOH . 
F 4 HOH A 85 2085 2085 HOH HOH . 
F 4 HOH A 86 2086 2086 HOH HOH . 
F 4 HOH A 87 2087 2087 HOH HOH . 
F 4 HOH A 88 2088 2088 HOH HOH . 
F 4 HOH A 89 2089 2089 HOH HOH . 
F 4 HOH A 90 2090 2090 HOH HOH . 
F 4 HOH A 91 2091 2091 HOH HOH . 
F 4 HOH A 92 2092 2092 HOH HOH . 
F 4 HOH A 93 2093 2093 HOH HOH . 
F 4 HOH A 94 2094 2094 HOH HOH . 
F 4 HOH A 95 2095 2095 HOH HOH . 
F 4 HOH A 96 2096 2096 HOH HOH . 
F 4 HOH A 97 2097 2097 HOH HOH . 
F 4 HOH A 98 2098 2098 HOH HOH . 
F 4 HOH A 99 2099 2099 HOH HOH . 
F 4 HOH A 100 2100 2100 HOH HOH . 
F 4 HOH A 101 2101 2101 HOH HOH . 
F 4 HOH A 102 2102 2102 HOH HOH . 
F 4 HOH A 103 2103 2103 HOH HOH . 
F 4 HOH A 104 2104 2104 HOH HOH . 
F 4 HOH A 105 2105 2105 HOH HOH . 
F 4 HOH A 106 2106 2106 HOH HOH . 
F 4 HOH A 107 2107 2107 HOH HOH . 
F 4 HOH A 108 2108 2108 HOH HOH . 
F 4 HOH A 109 2109 2109 HOH HOH . 
F 4 HOH A 110 2110 2110 HOH HOH . 
F 4 HOH A 111 2111 2111 HOH HOH . 
F 4 HOH A 112 2112 2112 HOH HOH . 
F 4 HOH A 113 2113 2113 HOH HOH . 
F 4 HOH A 114 2114 2114 HOH HOH . 
F 4 HOH A 115 2115 2115 HOH HOH . 
F 4 HOH A 116 2116 2116 HOH HOH . 
F 4 HOH A 117 2117 2117 HOH HOH . 
F 4 HOH A 118 2118 2118 HOH HOH . 
F 4 HOH A 119 2119 2119 HOH HOH . 
F 4 HOH A 120 2120 2120 HOH HOH . 
F 4 HOH A 121 2121 2121 HOH HOH . 
F 4 HOH A 122 2122 2122 HOH HOH . 
F 4 HOH A 123 2123 2123 HOH HOH . 
F 4 HOH A 124 2124 2124 HOH HOH . 
F 4 HOH A 125 2125 2125 HOH HOH . 
F 4 HOH A 126 2126 2126 HOH HOH . 
F 4 HOH A 127 2127 2127 HOH HOH . 
F 4 HOH A 128 2128 2128 HOH HOH . 
F 4 HOH A 129 2129 2129 HOH HOH . 
F 4 HOH A 130 2130 2130 HOH HOH . 
F 4 HOH A 131 2131 2131 HOH HOH . 
F 4 HOH A 132 2132 2132 HOH HOH . 
F 4 HOH A 133 2133 2133 HOH HOH . 
F 4 HOH A 134 2134 2134 HOH HOH . 
F 4 HOH A 135 2135 2135 HOH HOH . 
F 4 HOH A 136 2136 2136 HOH HOH . 
F 4 HOH A 137 2137 2137 HOH HOH . 
F 4 HOH A 138 2138 2138 HOH HOH . 
F 4 HOH A 139 2139 2139 HOH HOH . 
F 4 HOH A 140 2140 2140 HOH HOH . 
F 4 HOH A 141 2141 2141 HOH HOH . 
F 4 HOH A 142 2142 2142 HOH HOH . 
F 4 HOH A 143 2143 2143 HOH HOH . 
F 4 HOH A 144 2144 2144 HOH HOH . 
F 4 HOH A 145 2145 2145 HOH HOH . 
F 4 HOH A 146 2146 2146 HOH HOH . 
F 4 HOH A 147 2147 2147 HOH HOH . 
F 4 HOH A 148 2148 2148 HOH HOH . 
F 4 HOH A 149 2149 2149 HOH HOH . 
F 4 HOH A 150 2150 2150 HOH HOH . 
F 4 HOH A 151 2151 2151 HOH HOH . 
F 4 HOH A 152 2152 2152 HOH HOH . 
F 4 HOH A 153 2153 2153 HOH HOH . 
F 4 HOH A 154 2154 2154 HOH HOH . 
F 4 HOH A 155 2155 2155 HOH HOH . 
F 4 HOH A 156 2156 2156 HOH HOH . 
F 4 HOH A 157 2157 2157 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O26 T3M . . . B 2 23.506 -8.192 11.836 1 45.45 ? O26 T3M 1280 A 1 
HETATM 2 C C24 T3M . . . B 2 22.801 -7.472 12.808 1 39.51 ? C24 T3M 1280 A 1 
HETATM 3 O O25 T3M . . . B 2 21.821 -6.868 12.511 1 35.42 ? O25 T3M 1280 A 1 
HETATM 4 C C23 T3M . . . B 2 23.305 -7.416 14.249 1 33.43 ? C23 T3M 1280 A 1 
HETATM 5 C C22 T3M . . . B 2 24.688 -7.658 14.531 1 38.16 ? C22 T3M 1280 A 1 
HETATM 6 C C21 T3M . . . B 2 25.166 -7.536 15.849 1 34.39 ? C21 T3M 1280 A 1 
HETATM 7 C C27 T3M . . . B 2 22.425 -7.04 15.288 1 32.67 ? C27 T3M 1280 A 1 
HETATM 8 C C28 T3M . . . B 2 22.883 -6.915 16.564 1 28.06 ? C28 T3M 1280 A 1 
HETATM 9 C C20 T3M . . . B 2 24.311 -7.195 16.856 1 24.75 ? C20 T3M 1280 A 1 
HETATM 10 C C19 T3M . . . B 2 24.853 -7.013 18.267 1 23.18 ? C19 T3M 1280 A 1 
HETATM 11 N N14 T3M . . . B 2 25.478 -8.032 18.888 1 24.7 ? N14 T3M 1280 A 1 
HETATM 12 C C17 T3M . . . B 2 24.749 -5.736 18.919 1 18.81 ? C17 T3M 1280 A 1 
HETATM 13 N N18 T3M . . . B 2 24.081 -4.627 18.29 1 24.26 ? N18 T3M 1280 A 1 
HETATM 14 N N16 T3M . . . B 2 25.24 -5.559 20.168 1 25.48 ? N16 T3M 1280 A 1 
HETATM 15 C C15 T3M . . . B 2 25.826 -6.557 20.774 1 25.37 ? C15 T3M 1280 A 1 
HETATM 16 C C13 T3M . . . B 2 25.992 -7.848 20.074 1 21.92 ? C13 T3M 1280 A 1 
HETATM 17 C C12 T3M . . . B 2 26.624 -9.02 20.801 1 22.67 ? C12 T3M 1280 A 1 
HETATM 18 C C4 T3M . . . B 2 27.223 -8.839 22.072 1 19.5 ? C4 T3M 1280 A 1 
HETATM 19 C C11 T3M . . . B 2 26.568 -10.264 20.224 1 25.24 ? C11 T3M 1280 A 1 
HETATM 20 C C8 T3M . . . B 2 27.137 -11.428 20.928 1 25 ? C8 T3M 1280 A 1 
HETATM 21 O O9 T3M . . . B 2 27.089 -12.713 20.367 1 29.33 ? O9 T3M 1280 A 1 
HETATM 22 C C10 T3M . . . B 2 26.614 -12.885 19.059 1 29.62 ? C10 T3M 1280 A 1 
HETATM 23 C C5 T3M . . . B 2 27.721 -11.252 22.144 1 28.2 ? C5 T3M 1280 A 1 
HETATM 24 O O6 T3M . . . B 2 28.269 -12.353 22.799 1 31.4 ? O6 T3M 1280 A 1 
HETATM 25 C C7 T3M . . . B 2 27.404 -13.221 23.482 1 41.58 ? C7 T3M 1280 A 1 
HETATM 26 C C3 T3M . . . B 2 27.776 -9.98 22.743 1 19.92 ? C3 T3M 1280 A 1 
HETATM 27 O O2 T3M . . . B 2 28.321 -9.848 24.023 1 34.17 ? O2 T3M 1280 A 1 
HETATM 28 C C1 T3M . . . B 2 28.613 -8.572 24.513 1 37.87 ? C1 T3M 1280 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           28 
#