data_2XKF # _model_server_result.job_id RvjSP_rFsXHzpvkxlTGbGA _model_server_result.datetime_utc '2024-11-22 19:35:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xkf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1280}' # _entry.id 2XKF # _exptl.entry_id 2XKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.418 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-[3-amino-6-(3,4,5-trimethoxyphenyl)pyrazin-2-yl]piperidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.88 _cell.angle_gamma 90 _cell.entry_id 2XKF _cell.length_a 100.234 _cell.length_b 56.956 _cell.length_c 73.493 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 N4 O5' _chem_comp.formula_weight 388.418 _chem_comp.id BX1 _chem_comp.mon_nstd_flag . _chem_comp.name '1-[3-amino-6-(3,4,5-trimethoxyphenyl)pyrazin-2-yl]piperidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O02 BX1 sing 70 n n O02 C03 BX1 sing 71 n n C03 C04 BX1 sing 72 n y C03 C26 BX1 doub 73 n y C04 C05 BX1 doub 74 n y C05 C06 BX1 sing 75 n y C05 C22 BX1 sing 76 n y C06 C07 BX1 sing 77 n y C06 N21 BX1 doub 78 n y C07 N08 BX1 doub 79 n y N08 C09 BX1 sing 80 n y C09 N10 BX1 sing 81 n n C09 C11 BX1 doub 82 n y C11 N12 BX1 sing 83 n n C11 N21 BX1 sing 84 n y N12 C13 BX1 sing 85 n n N12 C20 BX1 sing 86 n n C13 C14 BX1 sing 87 n n C14 C15 BX1 sing 88 n n C15 C16 BX1 sing 89 n n C15 C19 BX1 sing 90 n n C16 O17 BX1 doub 91 n n C16 O18 BX1 sing 92 n n C19 C20 BX1 sing 93 n n C22 C23 BX1 doub 94 n y C23 O24 BX1 sing 95 n n C23 C26 BX1 sing 96 n y O24 C25 BX1 sing 97 n n C26 O27 BX1 sing 98 n n O27 C28 BX1 sing 99 n n C01 H011 BX1 sing 100 n n C01 H012 BX1 sing 101 n n C01 H013 BX1 sing 102 n n C04 H04 BX1 sing 103 n n C22 H22 BX1 sing 104 n n C07 H07 BX1 sing 105 n n N10 H101 BX1 sing 106 n n N10 H102 BX1 sing 107 n n C13 H131 BX1 sing 108 n n C13 H132 BX1 sing 109 n n C20 H201 BX1 sing 110 n n C20 H202 BX1 sing 111 n n C14 H141 BX1 sing 112 n n C14 H142 BX1 sing 113 n n C15 H15 BX1 sing 114 n n C19 H191 BX1 sing 115 n n C19 H192 BX1 sing 116 n n O18 H18 BX1 sing 117 n n C25 H251 BX1 sing 118 n n C25 H252 BX1 sing 119 n n C25 H253 BX1 sing 120 n n C28 H281 BX1 sing 121 n n C28 H282 BX1 sing 122 n n C28 H283 BX1 sing 123 n n # _atom_sites.entry_id 2XKF _atom_sites.fract_transf_matrix[1][1] 0.009977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007761 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BX1 A 1 1280 1280 BX1 BX1 . C 3 CL A 1 1281 1281 CL CL . D 3 CL A 1 1282 1282 CL CL . E 3 CL A 1 1283 1283 CL CL . F 3 CL A 1 1284 1284 CL CL . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . G 4 HOH A 63 2063 2063 HOH HOH . G 4 HOH A 64 2064 2064 HOH HOH . G 4 HOH A 65 2065 2065 HOH HOH . G 4 HOH A 66 2066 2066 HOH HOH . G 4 HOH A 67 2067 2067 HOH HOH . G 4 HOH A 68 2068 2068 HOH HOH . G 4 HOH A 69 2069 2069 HOH HOH . G 4 HOH A 70 2070 2070 HOH HOH . G 4 HOH A 71 2071 2071 HOH HOH . G 4 HOH A 72 2072 2072 HOH HOH . G 4 HOH A 73 2073 2073 HOH HOH . G 4 HOH A 74 2074 2074 HOH HOH . G 4 HOH A 75 2075 2075 HOH HOH . G 4 HOH A 76 2076 2076 HOH HOH . G 4 HOH A 77 2077 2077 HOH HOH . G 4 HOH A 78 2078 2078 HOH HOH . G 4 HOH A 79 2079 2079 HOH HOH . G 4 HOH A 80 2080 2080 HOH HOH . G 4 HOH A 81 2081 2081 HOH HOH . G 4 HOH A 82 2082 2082 HOH HOH . G 4 HOH A 83 2083 2083 HOH HOH . G 4 HOH A 84 2084 2084 HOH HOH . G 4 HOH A 85 2085 2085 HOH HOH . G 4 HOH A 86 2086 2086 HOH HOH . G 4 HOH A 87 2087 2087 HOH HOH . G 4 HOH A 88 2088 2088 HOH HOH . G 4 HOH A 89 2089 2089 HOH HOH . G 4 HOH A 90 2090 2090 HOH HOH . G 4 HOH A 91 2091 2091 HOH HOH . G 4 HOH A 92 2092 2092 HOH HOH . G 4 HOH A 93 2093 2093 HOH HOH . G 4 HOH A 94 2094 2094 HOH HOH . G 4 HOH A 95 2095 2095 HOH HOH . G 4 HOH A 96 2096 2096 HOH HOH . G 4 HOH A 97 2097 2097 HOH HOH . G 4 HOH A 98 2098 2098 HOH HOH . G 4 HOH A 99 2099 2099 HOH HOH . G 4 HOH A 100 2100 2100 HOH HOH . G 4 HOH A 101 2101 2101 HOH HOH . G 4 HOH A 102 2102 2102 HOH HOH . G 4 HOH A 103 2103 2103 HOH HOH . G 4 HOH A 104 2104 2104 HOH HOH . G 4 HOH A 105 2105 2105 HOH HOH . G 4 HOH A 106 2106 2106 HOH HOH . G 4 HOH A 107 2107 2107 HOH HOH . G 4 HOH A 108 2108 2108 HOH HOH . G 4 HOH A 109 2109 2109 HOH HOH . G 4 HOH A 110 2110 2110 HOH HOH . G 4 HOH A 111 2111 2111 HOH HOH . G 4 HOH A 112 2112 2112 HOH HOH . G 4 HOH A 113 2113 2113 HOH HOH . G 4 HOH A 114 2114 2114 HOH HOH . G 4 HOH A 115 2115 2115 HOH HOH . G 4 HOH A 116 2116 2116 HOH HOH . G 4 HOH A 117 2117 2117 HOH HOH . G 4 HOH A 118 2118 2118 HOH HOH . G 4 HOH A 119 2119 2119 HOH HOH . G 4 HOH A 120 2120 2120 HOH HOH . G 4 HOH A 121 2121 2121 HOH HOH . G 4 HOH A 122 2122 2122 HOH HOH . G 4 HOH A 123 2123 2123 HOH HOH . G 4 HOH A 124 2124 2124 HOH HOH . G 4 HOH A 125 2125 2125 HOH HOH . G 4 HOH A 126 2126 2126 HOH HOH . G 4 HOH A 127 2127 2127 HOH HOH . G 4 HOH A 128 2128 2128 HOH HOH . G 4 HOH A 129 2129 2129 HOH HOH . G 4 HOH A 130 2130 2130 HOH HOH . G 4 HOH A 131 2131 2131 HOH HOH . G 4 HOH A 132 2132 2132 HOH HOH . G 4 HOH A 133 2133 2133 HOH HOH . G 4 HOH A 134 2134 2134 HOH HOH . G 4 HOH A 135 2135 2135 HOH HOH . G 4 HOH A 136 2136 2136 HOH HOH . G 4 HOH A 137 2137 2137 HOH HOH . G 4 HOH A 138 2138 2138 HOH HOH . G 4 HOH A 139 2139 2139 HOH HOH . G 4 HOH A 140 2140 2140 HOH HOH . G 4 HOH A 141 2141 2141 HOH HOH . G 4 HOH A 142 2142 2142 HOH HOH . G 4 HOH A 143 2143 2143 HOH HOH . G 4 HOH A 144 2144 2144 HOH HOH . G 4 HOH A 145 2145 2145 HOH HOH . G 4 HOH A 146 2146 2146 HOH HOH . G 4 HOH A 147 2147 2147 HOH HOH . G 4 HOH A 148 2148 2148 HOH HOH . G 4 HOH A 149 2149 2149 HOH HOH . G 4 HOH A 150 2150 2150 HOH HOH . G 4 HOH A 151 2151 2151 HOH HOH . G 4 HOH A 152 2152 2152 HOH HOH . G 4 HOH A 153 2153 2153 HOH HOH . G 4 HOH A 154 2154 2154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 BX1 . . . B 2 -26.183 16.524 -19.083 1 17.11 ? C01 BX1 1280 A 1 HETATM 2 O O02 BX1 . . . B 2 -27.131 16.811 -20.047 1 20.84 ? O02 BX1 1280 A 1 HETATM 3 C C03 BX1 . . . B 2 -27.106 18.028 -20.709 1 24.22 ? C03 BX1 1280 A 1 HETATM 4 C C04 BX1 . . . B 2 -26.522 19.225 -20.055 1 21.63 ? C04 BX1 1280 A 1 HETATM 5 C C05 BX1 . . . B 2 -26.501 20.502 -20.752 1 24.42 ? C05 BX1 1280 A 1 HETATM 6 C C06 BX1 . . . B 2 -25.909 21.629 -20.095 1 27.75 ? C06 BX1 1280 A 1 HETATM 7 C C07 BX1 . . . B 2 -25.773 22.888 -20.769 1 26.64 ? C07 BX1 1280 A 1 HETATM 8 N N08 BX1 . . . B 2 -25.179 23.973 -20.104 1 22.13 ? N08 BX1 1280 A 1 HETATM 9 C C09 BX1 . . . B 2 -24.72 23.828 -18.783 1 22.08 ? C09 BX1 1280 A 1 HETATM 10 N N10 BX1 . . . B 2 -24.104 24.912 -18.11 1 20.23 ? N10 BX1 1280 A 1 HETATM 11 C C11 BX1 . . . B 2 -24.848 22.565 -18.118 1 26.74 ? C11 BX1 1280 A 1 HETATM 12 N N12 BX1 . . . B 2 -24.348 22.424 -16.757 1 27.19 ? N12 BX1 1280 A 1 HETATM 13 C C13 BX1 . . . B 2 -25.139 21.477 -15.962 1 27.18 ? C13 BX1 1280 A 1 HETATM 14 C C14 BX1 . . . B 2 -24.439 20.995 -14.69 1 29.09 ? C14 BX1 1280 A 1 HETATM 15 C C15 BX1 . . . B 2 -23.334 21.896 -14.189 1 28.67 ? C15 BX1 1280 A 1 HETATM 16 C C16 BX1 . . . B 2 -22.87 21.725 -12.79 1 28.6 ? C16 BX1 1280 A 1 HETATM 17 O O17 BX1 . . . B 2 -22.946 20.629 -12.264 1 34.34 ? O17 BX1 1280 A 1 HETATM 18 O O18 BX1 . . . B 2 -22.131 22.711 -12.19 1 24.03 ? O18 BX1 1280 A 1 HETATM 19 C C19 BX1 . . . B 2 -22.334 22.312 -15.258 1 25.98 ? C19 BX1 1280 A 1 HETATM 20 C C20 BX1 . . . B 2 -22.902 22.194 -16.695 1 24.66 ? C20 BX1 1280 A 1 HETATM 21 N N21 BX1 . . . B 2 -25.432 21.479 -18.772 1 26.52 ? N21 BX1 1280 A 1 HETATM 22 C C22 BX1 . . . B 2 -27.06 20.62 -22.096 1 14.98 ? C22 BX1 1280 A 1 HETATM 23 C C23 BX1 . . . B 2 -27.641 19.428 -22.741 1 27.05 ? C23 BX1 1280 A 1 HETATM 24 O O24 BX1 . . . B 2 -28.173 19.518 -24.012 1 28.33 ? O24 BX1 1280 A 1 HETATM 25 C C25 BX1 . . . B 2 -28.393 20.759 -24.568 1 24.98 ? C25 BX1 1280 A 1 HETATM 26 C C26 BX1 . . . B 2 -27.659 18.138 -22.038 1 29.02 ? C26 BX1 1280 A 1 HETATM 27 O O27 BX1 . . . B 2 -28.195 17.017 -22.633 1 34.53 ? O27 BX1 1280 A 1 HETATM 28 C C28 BX1 . . . B 2 -27.345 16.011 -23.047 1 37.95 ? C28 BX1 1280 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #