data_2XKW
#
_model_server_result.job_id            dP1BPXCx3heV8ztSICbFGA 
_model_server_result.datetime_utc      '2024-12-02 11:39:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xkw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1475}' 
#
_entry.id    2XKW 
#
_exptl.entry_id    2XKW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5R)-5-{4-[2-(5-ethylpyridin-2-yl)ethoxy]benzyl}-1,3-thiazolidine-2,4-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.01 
_cell.angle_gamma         90 
_cell.entry_id            2XKW 
_cell.length_a            92.861 
_cell.length_b            60.411 
_cell.length_c            119.849 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XKW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C19 H20 N2 O3 S' 
_chem_comp.formula_weight    356.439 
_chem_comp.id                P1B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5R)-5-{4-[2-(5-ethylpyridin-2-yl)ethoxy]benzyl}-1,3-thiazolidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PIOGLITAZONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C4 P1B doub 270 n n 
C4 N3 P1B sing 271 n n 
C4 C5 P1B sing 272 n n 
N3 C2 P1B sing 273 n n 
C5 S1 P1B sing 274 n n 
C5 C6 P1B sing 275 n n 
S1 C2 P1B sing 276 n n 
C2 O2 P1B doub 277 n n 
C6 C7 P1B sing 278 n n 
C21 C20 P1B sing 279 n y 
C21 C22 P1B doub 280 n y 
C7 C12 P1B sing 281 n y 
C7 C8 P1B doub 282 n y 
C12 C11 P1B doub 283 n y 
C11 C10 P1B sing 284 n y 
C10 C9 P1B doub 285 n y 
C10 O13 P1B sing 286 n n 
C9 C8 P1B sing 287 n y 
O13 C14 P1B sing 288 n n 
C14 C15 P1B sing 289 n n 
C15 C17 P1B sing 290 n n 
C24 C23 P1B sing 291 n n 
C23 C20 P1B sing 292 n n 
C20 C19 P1B doub 293 n y 
C19 N18 P1B sing 294 n y 
N18 C17 P1B doub 295 n y 
C22 C17 P1B sing 296 n y 
N3 H3 P1B sing 297 n n 
C5 H5 P1B sing 298 n n 
C6 H61C P1B sing 299 n n 
C6 H62C P1B sing 300 n n 
C21 H21 P1B sing 301 n n 
C22 H22 P1B sing 302 n n 
C12 H12 P1B sing 303 n n 
C8 H8 P1B sing 304 n n 
C11 H11 P1B sing 305 n n 
C9 H9 P1B sing 306 n n 
C14 H141 P1B sing 307 n n 
C14 H142 P1B sing 308 n n 
C15 H151 P1B sing 309 n n 
C15 H152 P1B sing 310 n n 
C24 H241 P1B sing 311 n n 
C24 H242 P1B sing 312 n n 
C24 H243 P1B sing 313 n n 
C23 H231 P1B sing 314 n n 
C23 H232 P1B sing 315 n n 
C19 H19 P1B sing 316 n n 
#
_atom_sites.entry_id                     2XKW 
_atom_sites.fract_transf_matrix[1][1]    0.010769 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002488 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016553 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008564 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 P1B A 1 1478 1478 P1B P1B . 
D 3 PE4 A 1 1479 1479 PE4 PE4 . 
E 2 P1B B 1 1475 1475 P1B P1B . 
F 4 EPE B 1 1476 1476 EPE EPE . 
G 5 HOH A 1 2001 2001 HOH HOH . 
G 5 HOH A 2 2002 2002 HOH HOH . 
G 5 HOH A 3 2003 2003 HOH HOH . 
G 5 HOH A 4 2004 2004 HOH HOH . 
G 5 HOH A 5 2005 2005 HOH HOH . 
G 5 HOH A 6 2006 2006 HOH HOH . 
G 5 HOH A 7 2007 2007 HOH HOH . 
G 5 HOH A 8 2008 2008 HOH HOH . 
G 5 HOH A 9 2009 2009 HOH HOH . 
G 5 HOH A 10 2010 2010 HOH HOH . 
G 5 HOH A 11 2011 2011 HOH HOH . 
G 5 HOH A 12 2012 2012 HOH HOH . 
G 5 HOH A 13 2013 2013 HOH HOH . 
G 5 HOH A 14 2014 2014 HOH HOH . 
G 5 HOH A 15 2015 2015 HOH HOH . 
G 5 HOH A 16 2016 2016 HOH HOH . 
G 5 HOH A 17 2017 2017 HOH HOH . 
G 5 HOH A 18 2018 2018 HOH HOH . 
G 5 HOH A 19 2019 2019 HOH HOH . 
G 5 HOH A 20 2020 2020 HOH HOH . 
G 5 HOH A 21 2021 2021 HOH HOH . 
G 5 HOH A 22 2022 2022 HOH HOH . 
G 5 HOH A 23 2023 2023 HOH HOH . 
G 5 HOH A 24 2024 2024 HOH HOH . 
G 5 HOH A 25 2025 2025 HOH HOH . 
G 5 HOH A 26 2026 2026 HOH HOH . 
G 5 HOH A 27 2027 2027 HOH HOH . 
G 5 HOH A 28 2028 2028 HOH HOH . 
G 5 HOH A 29 2029 2029 HOH HOH . 
G 5 HOH A 30 2030 2030 HOH HOH . 
G 5 HOH A 31 2031 2031 HOH HOH . 
G 5 HOH A 32 2032 2032 HOH HOH . 
G 5 HOH A 33 2033 2033 HOH HOH . 
G 5 HOH A 34 2034 2034 HOH HOH . 
G 5 HOH A 35 2035 2035 HOH HOH . 
G 5 HOH A 36 2036 2036 HOH HOH . 
G 5 HOH A 37 2037 2037 HOH HOH . 
G 5 HOH A 38 2038 2038 HOH HOH . 
G 5 HOH A 39 2039 2039 HOH HOH . 
G 5 HOH A 40 2040 2040 HOH HOH . 
G 5 HOH A 41 2041 2041 HOH HOH . 
G 5 HOH A 42 2042 2042 HOH HOH . 
G 5 HOH A 43 2043 2043 HOH HOH . 
G 5 HOH A 44 2044 2044 HOH HOH . 
G 5 HOH A 45 2045 2045 HOH HOH . 
G 5 HOH A 46 2046 2046 HOH HOH . 
G 5 HOH A 47 2047 2047 HOH HOH . 
G 5 HOH A 48 2048 2048 HOH HOH . 
G 5 HOH A 49 2049 2049 HOH HOH . 
G 5 HOH A 50 2050 2050 HOH HOH . 
G 5 HOH A 51 2051 2051 HOH HOH . 
G 5 HOH A 52 2052 2052 HOH HOH . 
G 5 HOH A 53 2053 2053 HOH HOH . 
G 5 HOH A 54 2054 2054 HOH HOH . 
G 5 HOH A 55 2055 2055 HOH HOH . 
G 5 HOH A 56 2056 2056 HOH HOH . 
G 5 HOH A 57 2057 2057 HOH HOH . 
G 5 HOH A 58 2058 2058 HOH HOH . 
G 5 HOH A 59 2059 2059 HOH HOH . 
G 5 HOH A 60 2060 2060 HOH HOH . 
G 5 HOH A 61 2061 2061 HOH HOH . 
G 5 HOH A 62 2062 2062 HOH HOH . 
G 5 HOH A 63 2063 2063 HOH HOH . 
G 5 HOH A 64 2064 2064 HOH HOH . 
G 5 HOH A 65 2065 2065 HOH HOH . 
G 5 HOH A 66 2066 2066 HOH HOH . 
G 5 HOH A 67 2067 2067 HOH HOH . 
G 5 HOH A 68 2068 2068 HOH HOH . 
G 5 HOH A 69 2069 2069 HOH HOH . 
G 5 HOH A 70 2070 2070 HOH HOH . 
G 5 HOH A 71 2071 2071 HOH HOH . 
G 5 HOH A 72 2072 2072 HOH HOH . 
G 5 HOH A 73 2073 2073 HOH HOH . 
G 5 HOH A 74 2074 2074 HOH HOH . 
G 5 HOH A 75 2075 2075 HOH HOH . 
G 5 HOH A 76 2076 2076 HOH HOH . 
G 5 HOH A 77 2077 2077 HOH HOH . 
G 5 HOH A 78 2078 2078 HOH HOH . 
G 5 HOH A 79 2079 2079 HOH HOH . 
G 5 HOH A 80 2080 2080 HOH HOH . 
G 5 HOH A 81 2081 2081 HOH HOH . 
G 5 HOH A 82 2082 2082 HOH HOH . 
G 5 HOH A 83 2083 2083 HOH HOH . 
G 5 HOH A 84 2084 2084 HOH HOH . 
G 5 HOH A 85 2085 2085 HOH HOH . 
G 5 HOH A 86 2086 2086 HOH HOH . 
G 5 HOH A 87 2087 2087 HOH HOH . 
G 5 HOH A 88 2088 2088 HOH HOH . 
G 5 HOH A 89 2089 2089 HOH HOH . 
G 5 HOH A 90 2090 2090 HOH HOH . 
G 5 HOH A 91 2091 2091 HOH HOH . 
G 5 HOH A 92 2092 2092 HOH HOH . 
G 5 HOH A 93 2093 2093 HOH HOH . 
G 5 HOH A 94 2094 2094 HOH HOH . 
H 5 HOH B 1 2001 2001 HOH HOH . 
H 5 HOH B 2 2002 2002 HOH HOH . 
H 5 HOH B 3 2003 2003 HOH HOH . 
H 5 HOH B 4 2004 2004 HOH HOH . 
H 5 HOH B 5 2005 2005 HOH HOH . 
H 5 HOH B 6 2006 2006 HOH HOH . 
H 5 HOH B 7 2007 2007 HOH HOH . 
H 5 HOH B 8 2008 2008 HOH HOH . 
H 5 HOH B 9 2009 2009 HOH HOH . 
H 5 HOH B 10 2010 2010 HOH HOH . 
H 5 HOH B 11 2011 2011 HOH HOH . 
H 5 HOH B 12 2012 2012 HOH HOH . 
H 5 HOH B 13 2013 2013 HOH HOH . 
H 5 HOH B 14 2014 2014 HOH HOH . 
H 5 HOH B 15 2015 2015 HOH HOH . 
H 5 HOH B 16 2016 2016 HOH HOH . 
H 5 HOH B 17 2017 2017 HOH HOH . 
H 5 HOH B 18 2018 2018 HOH HOH . 
H 5 HOH B 19 2019 2019 HOH HOH . 
H 5 HOH B 20 2020 2020 HOH HOH . 
H 5 HOH B 21 2021 2021 HOH HOH . 
H 5 HOH B 22 2022 2022 HOH HOH . 
H 5 HOH B 23 2023 2023 HOH HOH . 
H 5 HOH B 24 2024 2024 HOH HOH . 
H 5 HOH B 25 2025 2025 HOH HOH . 
H 5 HOH B 26 2026 2026 HOH HOH . 
H 5 HOH B 27 2027 2027 HOH HOH . 
H 5 HOH B 28 2028 2028 HOH HOH . 
H 5 HOH B 29 2029 2029 HOH HOH . 
H 5 HOH B 30 2030 2030 HOH HOH . 
H 5 HOH B 31 2031 2031 HOH HOH . 
H 5 HOH B 32 2032 2032 HOH HOH . 
H 5 HOH B 33 2033 2033 HOH HOH . 
H 5 HOH B 34 2034 2034 HOH HOH . 
H 5 HOH B 35 2035 2035 HOH HOH . 
H 5 HOH B 36 2036 2036 HOH HOH . 
H 5 HOH B 37 2037 2037 HOH HOH . 
H 5 HOH B 38 2038 2038 HOH HOH . 
H 5 HOH B 39 2039 2039 HOH HOH . 
H 5 HOH B 40 2040 2040 HOH HOH . 
H 5 HOH B 41 2041 2041 HOH HOH . 
H 5 HOH B 42 2042 2042 HOH HOH . 
H 5 HOH B 43 2043 2043 HOH HOH . 
H 5 HOH B 44 2044 2044 HOH HOH . 
H 5 HOH B 45 2045 2045 HOH HOH . 
H 5 HOH B 46 2046 2046 HOH HOH . 
H 5 HOH B 47 2047 2047 HOH HOH . 
H 5 HOH B 48 2048 2048 HOH HOH . 
H 5 HOH B 49 2049 2049 HOH HOH . 
H 5 HOH B 50 2050 2050 HOH HOH . 
H 5 HOH B 51 2051 2051 HOH HOH . 
H 5 HOH B 52 2052 2052 HOH HOH . 
H 5 HOH B 53 2053 2053 HOH HOH . 
H 5 HOH B 54 2054 2054 HOH HOH . 
H 5 HOH B 55 2055 2055 HOH HOH . 
H 5 HOH B 56 2056 2056 HOH HOH . 
H 5 HOH B 57 2057 2057 HOH HOH . 
H 5 HOH B 58 2058 2058 HOH HOH . 
H 5 HOH B 59 2059 2059 HOH HOH . 
H 5 HOH B 60 2060 2060 HOH HOH . 
H 5 HOH B 61 2061 2061 HOH HOH . 
H 5 HOH B 62 2062 2062 HOH HOH . 
H 5 HOH B 63 2063 2063 HOH HOH . 
H 5 HOH B 64 2064 2064 HOH HOH . 
H 5 HOH B 65 2065 2065 HOH HOH . 
H 5 HOH B 66 2066 2066 HOH HOH . 
H 5 HOH B 67 2067 2067 HOH HOH . 
H 5 HOH B 68 2068 2068 HOH HOH . 
H 5 HOH B 69 2069 2069 HOH HOH . 
H 5 HOH B 70 2070 2070 HOH HOH . 
H 5 HOH B 71 2071 2071 HOH HOH . 
H 5 HOH B 72 2072 2072 HOH HOH . 
H 5 HOH B 73 2073 2073 HOH HOH . 
H 5 HOH B 74 2074 2074 HOH HOH . 
H 5 HOH B 75 2075 2075 HOH HOH . 
H 5 HOH B 76 2076 2076 HOH HOH . 
H 5 HOH B 77 2077 2077 HOH HOH . 
H 5 HOH B 78 2078 2078 HOH HOH . 
H 5 HOH B 79 2079 2079 HOH HOH . 
H 5 HOH B 80 2080 2080 HOH HOH . 
H 5 HOH B 81 2081 2081 HOH HOH . 
H 5 HOH B 82 2082 2082 HOH HOH . 
H 5 HOH B 83 2083 2083 HOH HOH . 
H 5 HOH B 84 2084 2084 HOH HOH . 
H 5 HOH B 85 2085 2085 HOH HOH . 
H 5 HOH B 86 2086 2086 HOH HOH . 
H 5 HOH B 87 2087 2087 HOH HOH . 
H 5 HOH B 88 2088 2088 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 P1B . . . E 2 -11.195 -22.582 11.921 1 68.47 ? O4 P1B 1475 B 1 
HETATM 2 C C4 P1B . . . E 2 -10.295 -23.048 11.223 1 88.63 ? C4 P1B 1475 B 1 
HETATM 3 N N3 P1B . . . E 2 -10.541 -23.479 9.973 1 92.6 ? N3 P1B 1475 B 1 
HETATM 4 C C5 P1B . . . E 2 -8.832 -23.15 11.693 1 89.42 ? C5 P1B 1475 B 1 
HETATM 5 S S1 P1B . . . E 2 -8.046 -23.893 10.237 1 92.54 ? S1 P1B 1475 B 1 
HETATM 6 C C2 P1B . . . E 2 -9.48 -23.958 9.301 1 103.24 ? C2 P1B 1475 B 1 
HETATM 7 O O2 P1B . . . E 2 -9.52 -24.398 8.15 1 96.24 ? O2 P1B 1475 B 1 
HETATM 8 C C6 P1B . . . E 2 -8.709 -24.056 12.912 1 69.17 ? C6 P1B 1475 B 1 
HETATM 9 C C21 P1B . . . E 2 -2.1 -25.266 21.212 1 45.52 ? C21 P1B 1475 B 1 
HETATM 10 C C7 P1B . . . E 2 -7.411 -23.804 13.701 1 70.29 ? C7 P1B 1475 B 1 
HETATM 11 C C12 P1B . . . E 2 -6.832 -22.528 13.739 1 68.32 ? C12 P1B 1475 B 1 
HETATM 12 C C11 P1B . . . E 2 -5.659 -22.302 14.461 1 69.63 ? C11 P1B 1475 B 1 
HETATM 13 C C10 P1B . . . E 2 -5.058 -23.347 15.159 1 60.25 ? C10 P1B 1475 B 1 
HETATM 14 C C9 P1B . . . E 2 -5.631 -24.627 15.119 1 64.88 ? C9 P1B 1475 B 1 
HETATM 15 C C8 P1B . . . E 2 -6.807 -24.858 14.394 1 63.24 ? C8 P1B 1475 B 1 
HETATM 16 O O13 P1B . . . E 2 -3.916 -23.091 15.86 1 54.96 ? O13 P1B 1475 B 1 
HETATM 17 C C14 P1B . . . E 2 -3.549 -24.19 16.716 1 57.47 ? C14 P1B 1475 B 1 
HETATM 18 C C15 P1B . . . E 2 -2.756 -23.587 17.871 1 57.34 ? C15 P1B 1475 B 1 
HETATM 19 C C24 P1B . . . E 2 0.319 -27.34 22.15 1 50.47 ? C24 P1B 1475 B 1 
HETATM 20 C C23 P1B . . . E 2 -1.018 -27.332 21.771 1 59.1 ? C23 P1B 1475 B 1 
HETATM 21 C C20 P1B . . . E 2 -1.444 -26.424 20.813 1 45.22 ? C20 P1B 1475 B 1 
HETATM 22 C C19 P1B . . . E 2 -1.231 -26.655 19.442 1 54.49 ? C19 P1B 1475 B 1 
HETATM 23 N N18 P1B . . . E 2 -1.647 -25.758 18.54 1 54.12 ? N18 P1B 1475 B 1 
HETATM 24 C C22 P1B . . . E 2 -2.524 -24.352 20.254 1 51.88 ? C22 P1B 1475 B 1 
HETATM 25 C C17 P1B . . . E 2 -2.29 -24.622 18.905 1 59.68 ? C17 P1B 1475 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          39 
_model_server_stats.element_count           25 
#