data_2XLC # _model_server_result.job_id TF1aVga-FnB3OlnXdQ6j3Q _model_server_result.datetime_utc '2024-12-26 19:51:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xlc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1318}' # _entry.id 2XLC # _exptl.entry_id 2XLC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 138.102 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIETHYL PHOSPHONATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.6 _cell.angle_gamma 90 _cell.entry_id 2XLC _cell.length_a 82.049 _cell.length_b 116.052 _cell.length_c 100.248 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 114 A GLY 114 1_555 A N MSE 115 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 115 A MSE 115 1_555 A N LEU 116 A LEU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C TRP 137 A TRP 137 1_555 A N MSE 138 A MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 138 A MSE 138 1_555 A N THR 139 A THR 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A OG SER 181 A SER 181 1_555 G P DEP . A DEP 1318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? covale ? covale6 A C LEU 262 A LEU 262 1_555 A N MSE 263 A MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C MSE 263 A MSE 263 1_555 A N ALA 264 A ALA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 B C GLY 114 B GLY 114 1_555 B N MSE 115 B MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 B C MSE 115 B MSE 115 1_555 B N LEU 116 B LEU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 B C TRP 137 B TRP 137 1_555 B N MSE 138 B MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 B C MSE 138 B MSE 138 1_555 B N THR 139 B THR 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B OG SER 181 B SER 181 1_555 H P DEP . B DEP 1318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.707 ? covale ? covale13 B C LEU 262 B LEU 262 1_555 B N MSE 263 B MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C MSE 263 B MSE 263 1_555 B N ALA 264 B ALA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 C C GLY 114 C GLY 114 1_555 C N MSE 115 C MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 C C MSE 115 C MSE 115 1_555 C N LEU 116 C LEU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 C C TRP 137 C TRP 137 1_555 C N MSE 138 C MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 C C MSE 138 C MSE 138 1_555 C N THR 139 C THR 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 C OG SER 181 C SER 181 1_555 I P DEP . C DEP 1318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? covale ? covale20 C C LEU 262 C LEU 262 1_555 C N MSE 263 C MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 C C MSE 263 C MSE 263 1_555 C N ALA 264 C ALA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 D C GLY 114 D GLY 114 1_555 D N MSE 115 D MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 D C MSE 115 D MSE 115 1_555 D N LEU 116 D LEU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 D C TRP 137 D TRP 137 1_555 D N MSE 138 D MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 D C MSE 138 D MSE 138 1_555 D N THR 139 D THR 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale26 D OG SER 181 D SER 181 1_555 J P DEP . D DEP 1318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.72 ? covale ? covale27 D C LEU 262 D LEU 262 1_555 D N MSE 263 D MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale28 D C MSE 263 D MSE 263 1_555 D N ALA 264 D ALA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale29 E C GLY 114 E GLY 114 1_555 E N MSE 115 E MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 E C MSE 115 E MSE 115 1_555 E N LEU 116 E LEU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale31 E C TRP 137 E TRP 137 1_555 E N MSE 138 E MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale32 E C MSE 138 E MSE 138 1_555 E N THR 139 E THR 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale33 E OG SER 181 E SER 181 1_555 K P DEP . E DEP 1319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? covale ? covale34 E C LEU 262 E LEU 262 1_555 E N MSE 263 E MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale35 E C MSE 263 E MSE 263 1_555 E N ALA 264 E ALA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale36 F C GLY 114 F GLY 114 1_555 F N MSE 115 F MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale37 F C MSE 115 F MSE 115 1_555 F N LEU 116 F LEU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale38 F C TRP 137 F TRP 137 1_555 F N MSE 138 F MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale39 F C MSE 138 F MSE 138 1_555 F N THR 139 F THR 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale40 F OG SER 181 F SER 181 1_555 L P DEP . F DEP 1319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.533 ? covale ? covale41 F C LEU 262 F LEU 262 1_555 F N MSE 263 F MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale42 F C MSE 263 F MSE 263 1_555 F N ALA 264 F ALA 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C4 H11 O3 P' _chem_comp.formula_weight 138.102 _chem_comp.id DEP _chem_comp.mon_nstd_flag . _chem_comp.name 'DIETHYL PHOSPHONATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEP sing 70 n n C1 O1 DEP sing 71 n n C1 H11 DEP sing 72 n n C1 H12 DEP sing 73 n n C2 H21 DEP sing 74 n n C2 H22 DEP sing 75 n n C2 H23 DEP sing 76 n n C3 C4 DEP sing 77 n n C3 O2 DEP sing 78 n n C3 H31 DEP sing 79 n n C3 H32 DEP sing 80 n n C4 H41 DEP sing 81 n n C4 H42 DEP sing 82 n n C4 H43 DEP sing 83 n n O1 P DEP sing 84 n n O2 P DEP sing 85 n n O3 P DEP doub 86 n n HP1 P DEP sing 87 n n # _atom_sites.entry_id 2XLC _atom_sites.fract_transf_matrix[1][1] 0.012188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003403 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 DEP A 1 1318 1318 DEP DEP . H 2 DEP B 1 1318 1318 DEP DEP . I 2 DEP C 1 1318 1318 DEP DEP . J 2 DEP D 1 1318 1318 DEP DEP . K 2 DEP E 1 1319 1319 DEP DEP . L 2 DEP F 1 1319 1319 DEP DEP . M 3 HOH A 1 2001 2001 HOH HOH . M 3 HOH A 2 2002 2002 HOH HOH . M 3 HOH A 3 2003 2003 HOH HOH . M 3 HOH A 4 2004 2004 HOH HOH . M 3 HOH A 5 2005 2005 HOH HOH . M 3 HOH A 6 2006 2006 HOH HOH . M 3 HOH A 7 2007 2007 HOH HOH . M 3 HOH A 8 2008 2008 HOH HOH . M 3 HOH A 9 2009 2009 HOH HOH . N 3 HOH B 1 2001 2001 HOH HOH . N 3 HOH B 2 2002 2002 HOH HOH . N 3 HOH B 3 2003 2003 HOH HOH . N 3 HOH B 4 2004 2004 HOH HOH . N 3 HOH B 5 2005 2005 HOH HOH . N 3 HOH B 6 2006 2006 HOH HOH . N 3 HOH B 7 2007 2007 HOH HOH . N 3 HOH B 8 2008 2008 HOH HOH . N 3 HOH B 9 2009 2009 HOH HOH . N 3 HOH B 10 2010 2010 HOH HOH . N 3 HOH B 11 2011 2011 HOH HOH . O 3 HOH C 1 2001 2001 HOH HOH . O 3 HOH C 2 2002 2002 HOH HOH . O 3 HOH C 3 2003 2003 HOH HOH . O 3 HOH C 4 2004 2004 HOH HOH . O 3 HOH C 5 2005 2005 HOH HOH . O 3 HOH C 6 2006 2006 HOH HOH . O 3 HOH C 7 2007 2007 HOH HOH . O 3 HOH C 8 2008 2008 HOH HOH . P 3 HOH D 1 2001 2001 HOH HOH . P 3 HOH D 2 2002 2002 HOH HOH . Q 3 HOH E 1 2001 2001 HOH HOH . Q 3 HOH E 2 2002 2002 HOH HOH . Q 3 HOH E 3 2003 2003 HOH HOH . Q 3 HOH E 4 2004 2004 HOH HOH . R 3 HOH F 1 2001 2001 HOH HOH . R 3 HOH F 2 2002 2002 HOH HOH . R 3 HOH F 3 2003 2003 HOH HOH . R 3 HOH F 4 2004 2004 HOH HOH . R 3 HOH F 5 2005 2005 HOH HOH . R 3 HOH F 6 2006 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEP . . . I 2 12.031 -15.836 25.215 1 59.97 ? C1 DEP 1318 C 1 HETATM 2 C C2 DEP . . . I 2 11.561 -17.261 25.511 1 59.9 ? C2 DEP 1318 C 1 HETATM 3 C C3 DEP . . . I 2 13.194 -15.307 30.099 1 59.48 ? C3 DEP 1318 C 1 HETATM 4 C C4 DEP . . . I 2 14.085 -14.549 31.089 1 59.17 ? C4 DEP 1318 C 1 HETATM 5 O O1 DEP . . . I 2 12.46 -15.19 26.414 1 59.92 ? O1 DEP 1318 C 1 HETATM 6 O O2 DEP . . . I 2 13.501 -14.959 28.734 1 59.81 ? O2 DEP 1318 C 1 HETATM 7 O O3 DEP . . . I 2 14.56 -16.471 26.957 1 59.55 ? O3 DEP 1318 C 1 HETATM 8 P P DEP . . . I 2 13.265 -16.028 27.525 1 59.79 ? P DEP 1318 C 1 # _model_server_stats.io_time_ms 128 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #