data_2XLP
#
_model_server_result.job_id            gAYO6Y30pdA-0h2hfeET-A 
_model_server_result.datetime_utc      '2024-10-18 06:21:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xlp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1453}' 
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_entry.id    2XLP 
#
_exptl.entry_id    2XLP 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2XLP 
_cell.length_a            219.708 
_cell.length_b            219.708 
_cell.length_c            131.441 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XLP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,R,S,T,U,V,Y 1 1 
B,C,I,J,K,L,M,N,O,P,Q,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 U N N 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 441 n n 
C1 C2 PEG sing 442 n n 
C1 H11 PEG sing 443 n n 
C1 H12 PEG sing 444 n n 
O1 HO1 PEG sing 445 n n 
C2 O2 PEG sing 446 n n 
C2 H21 PEG sing 447 n n 
C2 H22 PEG sing 448 n n 
O2 C3 PEG sing 449 n n 
C3 C4 PEG sing 450 n n 
C3 H31 PEG sing 451 n n 
C3 H32 PEG sing 452 n n 
C4 O4 PEG sing 453 n n 
C4 H41 PEG sing 454 n n 
C4 H42 PEG sing 455 n n 
O4 HO4 PEG sing 456 n n 
#
_atom_sites.entry_id                     2XLP 
_atom_sites.fract_transf_matrix[1][1]    0.004551 
_atom_sites.fract_transf_matrix[1][2]    0.002628 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005256 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007608 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 500 500 FAD FAD . 
F 3 NAP A 1 501 501 NAP NAP . 
G 4 EPE A 1 1453 1453 EPE EPE . 
H 5 PEG A 1 1454 1454 PEG PEG . 
I 2 FAD B 1 500 500 FAD FAD . 
J 3 NAP B 1 501 501 NAP NAP . 
K 4 EPE B 1 1452 1452 EPE EPE . 
L 5 PEG B 1 1453 1453 PEG PEG . 
M 5 PEG B 1 1454 1454 PEG PEG . 
N 5 PEG B 1 1455 1455 PEG PEG . 
O 2 FAD C 1 500 500 FAD FAD . 
P 3 NAP C 1 501 501 NAP NAP . 
Q 4 EPE C 1 1452 1452 EPE EPE . 
R 2 FAD D 1 500 500 FAD FAD . 
S 3 NAP D 1 501 501 NAP NAP . 
T 4 EPE D 1 1453 1453 EPE EPE . 
U 5 PEG D 1 1454 1454 PEG PEG . 
V 6 HOH A 1 2001 2001 HOH HOH . 
V 6 HOH A 2 2002 2002 HOH HOH . 
V 6 HOH A 3 2003 2003 HOH HOH . 
V 6 HOH A 4 2004 2004 HOH HOH . 
V 6 HOH A 5 2005 2005 HOH HOH . 
V 6 HOH A 6 2006 2006 HOH HOH . 
V 6 HOH A 7 2007 2007 HOH HOH . 
V 6 HOH A 8 2008 2008 HOH HOH . 
V 6 HOH A 9 2009 2009 HOH HOH . 
V 6 HOH A 10 2010 2010 HOH HOH . 
V 6 HOH A 11 2011 2011 HOH HOH . 
V 6 HOH A 12 2012 2012 HOH HOH . 
V 6 HOH A 13 2013 2013 HOH HOH . 
V 6 HOH A 14 2014 2014 HOH HOH . 
V 6 HOH A 15 2015 2015 HOH HOH . 
V 6 HOH A 16 2016 2016 HOH HOH . 
V 6 HOH A 17 2017 2017 HOH HOH . 
V 6 HOH A 18 2018 2018 HOH HOH . 
V 6 HOH A 19 2019 2019 HOH HOH . 
V 6 HOH A 20 2020 2020 HOH HOH . 
V 6 HOH A 21 2021 2021 HOH HOH . 
V 6 HOH A 22 2022 2022 HOH HOH . 
V 6 HOH A 23 2023 2023 HOH HOH . 
V 6 HOH A 24 2024 2024 HOH HOH . 
W 6 HOH B 1 2001 2001 HOH HOH . 
W 6 HOH B 2 2002 2002 HOH HOH . 
W 6 HOH B 3 2003 2003 HOH HOH . 
W 6 HOH B 4 2004 2004 HOH HOH . 
W 6 HOH B 5 2005 2005 HOH HOH . 
W 6 HOH B 6 2006 2006 HOH HOH . 
W 6 HOH B 7 2007 2007 HOH HOH . 
W 6 HOH B 8 2008 2008 HOH HOH . 
W 6 HOH B 9 2009 2009 HOH HOH . 
W 6 HOH B 10 2010 2010 HOH HOH . 
W 6 HOH B 11 2011 2011 HOH HOH . 
W 6 HOH B 12 2012 2012 HOH HOH . 
W 6 HOH B 13 2013 2013 HOH HOH . 
W 6 HOH B 14 2014 2014 HOH HOH . 
W 6 HOH B 15 2015 2015 HOH HOH . 
W 6 HOH B 16 2016 2016 HOH HOH . 
W 6 HOH B 17 2017 2017 HOH HOH . 
W 6 HOH B 18 2018 2018 HOH HOH . 
W 6 HOH B 19 2019 2019 HOH HOH . 
W 6 HOH B 20 2020 2020 HOH HOH . 
W 6 HOH B 21 2021 2021 HOH HOH . 
W 6 HOH B 22 2022 2022 HOH HOH . 
W 6 HOH B 23 2023 2023 HOH HOH . 
W 6 HOH B 24 2024 2024 HOH HOH . 
W 6 HOH B 25 2025 2025 HOH HOH . 
W 6 HOH B 26 2026 2026 HOH HOH . 
W 6 HOH B 27 2027 2027 HOH HOH . 
W 6 HOH B 28 2028 2028 HOH HOH . 
W 6 HOH B 29 2029 2029 HOH HOH . 
W 6 HOH B 30 2030 2030 HOH HOH . 
X 6 HOH C 1 2001 2001 HOH HOH . 
X 6 HOH C 2 2002 2002 HOH HOH . 
X 6 HOH C 3 2003 2003 HOH HOH . 
X 6 HOH C 4 2004 2004 HOH HOH . 
X 6 HOH C 5 2005 2005 HOH HOH . 
X 6 HOH C 6 2006 2006 HOH HOH . 
X 6 HOH C 7 2007 2007 HOH HOH . 
X 6 HOH C 8 2008 2008 HOH HOH . 
X 6 HOH C 9 2009 2009 HOH HOH . 
X 6 HOH C 10 2010 2010 HOH HOH . 
X 6 HOH C 11 2011 2011 HOH HOH . 
X 6 HOH C 12 2012 2012 HOH HOH . 
X 6 HOH C 13 2013 2013 HOH HOH . 
X 6 HOH C 14 2014 2014 HOH HOH . 
X 6 HOH C 15 2015 2015 HOH HOH . 
X 6 HOH C 16 2016 2016 HOH HOH . 
X 6 HOH C 17 2017 2017 HOH HOH . 
X 6 HOH C 18 2018 2018 HOH HOH . 
X 6 HOH C 19 2019 2019 HOH HOH . 
X 6 HOH C 20 2020 2020 HOH HOH . 
X 6 HOH C 21 2021 2021 HOH HOH . 
X 6 HOH C 22 2022 2022 HOH HOH . 
X 6 HOH C 23 2023 2023 HOH HOH . 
X 6 HOH C 24 2024 2024 HOH HOH . 
Y 6 HOH D 1 2001 2001 HOH HOH . 
Y 6 HOH D 2 2002 2002 HOH HOH . 
Y 6 HOH D 3 2003 2003 HOH HOH . 
Y 6 HOH D 4 2004 2004 HOH HOH . 
Y 6 HOH D 5 2005 2005 HOH HOH . 
Y 6 HOH D 6 2006 2006 HOH HOH . 
Y 6 HOH D 7 2007 2007 HOH HOH . 
Y 6 HOH D 8 2008 2008 HOH HOH . 
Y 6 HOH D 9 2009 2009 HOH HOH . 
Y 6 HOH D 10 2010 2010 HOH HOH . 
Y 6 HOH D 11 2011 2011 HOH HOH . 
Y 6 HOH D 12 2012 2012 HOH HOH . 
Y 6 HOH D 13 2013 2013 HOH HOH . 
Y 6 HOH D 14 2014 2014 HOH HOH . 
Y 6 HOH D 15 2015 2015 HOH HOH . 
Y 6 HOH D 16 2016 2016 HOH HOH . 
Y 6 HOH D 17 2017 2017 HOH HOH . 
Y 6 HOH D 18 2018 2018 HOH HOH . 
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loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . L 5 -20.858 200.777 35.717 1 43.09 ? C1 PEG 1453 B 1 
HETATM 2 O O1 PEG . . . L 5 -20.493 200.518 34.347 1 39.27 ? O1 PEG 1453 B 1 
HETATM 3 C C2 PEG . . . L 5 -19.757 200.128 36.562 1 46.78 ? C2 PEG 1453 B 1 
HETATM 4 O O2 PEG . . . L 5 -20.057 200.368 37.95 1 48.47 ? O2 PEG 1453 B 1 
HETATM 5 C C3 PEG . . . L 5 -19.018 200.904 38.81 1 47.92 ? C3 PEG 1453 B 1 
HETATM 6 C C4 PEG . . . L 5 -17.701 200.119 38.926 1 47.39 ? C4 PEG 1453 B 1 
HETATM 7 O O4 PEG . . . L 5 -16.556 201.012 38.907 1 43.44 ? O4 PEG 1453 B 1 
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_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           7 
#