data_2XLP # _model_server_result.job_id KFxH-879tQWpq8bV0Int7w _model_server_result.datetime_utc '2024-11-24 21:30:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xlp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":500}' # _entry.id 2XLP # _exptl.entry_id 2XLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XLP _cell.length_a 219.708 _cell.length_b 219.708 _cell.length_c 131.441 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,R,S,T,U,V,Y 1 1 B,C,I,J,K,L,M,N,O,P,Q,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 O N N ? 2 R N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 116 n n PA O2A FAD sing 117 n n PA O5B FAD sing 118 n n PA O3P FAD sing 119 n n O2A HOA2 FAD sing 120 n n O5B C5B FAD sing 121 n n C5B C4B FAD sing 122 n n C5B H51A FAD sing 123 n n C5B H52A FAD sing 124 n n C4B O4B FAD sing 125 n n C4B C3B FAD sing 126 n n C4B H4B FAD sing 127 n n O4B C1B FAD sing 128 n n C3B O3B FAD sing 129 n n C3B C2B FAD sing 130 n n C3B H3B FAD sing 131 n n O3B HO3A FAD sing 132 n n C2B O2B FAD sing 133 n n C2B C1B FAD sing 134 n n C2B H2B FAD sing 135 n n O2B HO2A FAD sing 136 n n C1B N9A FAD sing 137 n n C1B H1B FAD sing 138 n n N9A C8A FAD sing 139 n y N9A C4A FAD sing 140 n y C8A N7A FAD doub 141 n y C8A H8A FAD sing 142 n n N7A C5A FAD sing 143 n y C5A C6A FAD sing 144 n y C5A C4A FAD doub 145 n y C6A N6A FAD sing 146 n n C6A N1A FAD doub 147 n y N6A H61A FAD sing 148 n n N6A H62A FAD sing 149 n n N1A C2A FAD sing 150 n y C2A N3A FAD doub 151 n y C2A H2A FAD sing 152 n n N3A C4A FAD sing 153 n y N1 C2 FAD sing 154 n n N1 C10 FAD doub 155 n n C2 O2 FAD doub 156 n n C2 N3 FAD sing 157 n n N3 C4 FAD sing 158 n n N3 HN3 FAD sing 159 n n C4 O4 FAD doub 160 n n C4 C4X FAD sing 161 n n C4X N5 FAD doub 162 n n C4X C10 FAD sing 163 n n N5 C5X FAD sing 164 n n C5X C6 FAD doub 165 n y C5X C9A FAD sing 166 n y C6 C7 FAD sing 167 n y C6 H6 FAD sing 168 n n C7 C7M FAD sing 169 n n C7 C8 FAD doub 170 n y C7M HM71 FAD sing 171 n n C7M HM72 FAD sing 172 n n C7M HM73 FAD sing 173 n n C8 C8M FAD sing 174 n n C8 C9 FAD sing 175 n y C8M HM81 FAD sing 176 n n C8M HM82 FAD sing 177 n n C8M HM83 FAD sing 178 n n C9 C9A FAD doub 179 n y C9 H9 FAD sing 180 n n C9A N10 FAD sing 181 n n N10 C10 FAD sing 182 n n N10 C1' FAD sing 183 n n C1' C2' FAD sing 184 n n C1' "H1'1" FAD sing 185 n n C1' "H1'2" FAD sing 186 n n C2' O2' FAD sing 187 n n C2' C3' FAD sing 188 n n C2' H2' FAD sing 189 n n O2' HO2' FAD sing 190 n n C3' O3' FAD sing 191 n n C3' C4' FAD sing 192 n n C3' H3' FAD sing 193 n n O3' HO3' FAD sing 194 n n C4' O4' FAD sing 195 n n C4' C5' FAD sing 196 n n C4' H4' FAD sing 197 n n O4' HO4' FAD sing 198 n n C5' O5' FAD sing 199 n n C5' "H5'1" FAD sing 200 n n C5' "H5'2" FAD sing 201 n n O5' P FAD sing 202 n n P O1P FAD doub 203 n n P O2P FAD sing 204 n n P O3P FAD sing 205 n n O2P HOP2 FAD sing 206 n n # _atom_sites.entry_id 2XLP _atom_sites.fract_transf_matrix[1][1] 0.004551 _atom_sites.fract_transf_matrix[1][2] 0.002628 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 500 500 FAD FAD . F 3 NAP A 1 501 501 NAP NAP . G 4 EPE A 1 1453 1453 EPE EPE . H 5 PEG A 1 1454 1454 PEG PEG . I 2 FAD B 1 500 500 FAD FAD . J 3 NAP B 1 501 501 NAP NAP . K 4 EPE B 1 1452 1452 EPE EPE . L 5 PEG B 1 1453 1453 PEG PEG . M 5 PEG B 1 1454 1454 PEG PEG . N 5 PEG B 1 1455 1455 PEG PEG . O 2 FAD C 1 500 500 FAD FAD . P 3 NAP C 1 501 501 NAP NAP . Q 4 EPE C 1 1452 1452 EPE EPE . R 2 FAD D 1 500 500 FAD FAD . S 3 NAP D 1 501 501 NAP NAP . T 4 EPE D 1 1453 1453 EPE EPE . U 5 PEG D 1 1454 1454 PEG PEG . V 6 HOH A 1 2001 2001 HOH HOH . V 6 HOH A 2 2002 2002 HOH HOH . V 6 HOH A 3 2003 2003 HOH HOH . V 6 HOH A 4 2004 2004 HOH HOH . V 6 HOH A 5 2005 2005 HOH HOH . V 6 HOH A 6 2006 2006 HOH HOH . V 6 HOH A 7 2007 2007 HOH HOH . V 6 HOH A 8 2008 2008 HOH HOH . V 6 HOH A 9 2009 2009 HOH HOH . V 6 HOH A 10 2010 2010 HOH HOH . V 6 HOH A 11 2011 2011 HOH HOH . V 6 HOH A 12 2012 2012 HOH HOH . V 6 HOH A 13 2013 2013 HOH HOH . V 6 HOH A 14 2014 2014 HOH HOH . V 6 HOH A 15 2015 2015 HOH HOH . V 6 HOH A 16 2016 2016 HOH HOH . V 6 HOH A 17 2017 2017 HOH HOH . V 6 HOH A 18 2018 2018 HOH HOH . V 6 HOH A 19 2019 2019 HOH HOH . V 6 HOH A 20 2020 2020 HOH HOH . V 6 HOH A 21 2021 2021 HOH HOH . V 6 HOH A 22 2022 2022 HOH HOH . V 6 HOH A 23 2023 2023 HOH HOH . V 6 HOH A 24 2024 2024 HOH HOH . W 6 HOH B 1 2001 2001 HOH HOH . W 6 HOH B 2 2002 2002 HOH HOH . W 6 HOH B 3 2003 2003 HOH HOH . W 6 HOH B 4 2004 2004 HOH HOH . W 6 HOH B 5 2005 2005 HOH HOH . W 6 HOH B 6 2006 2006 HOH HOH . W 6 HOH B 7 2007 2007 HOH HOH . W 6 HOH B 8 2008 2008 HOH HOH . W 6 HOH B 9 2009 2009 HOH HOH . W 6 HOH B 10 2010 2010 HOH HOH . W 6 HOH B 11 2011 2011 HOH HOH . W 6 HOH B 12 2012 2012 HOH HOH . W 6 HOH B 13 2013 2013 HOH HOH . W 6 HOH B 14 2014 2014 HOH HOH . W 6 HOH B 15 2015 2015 HOH HOH . W 6 HOH B 16 2016 2016 HOH HOH . W 6 HOH B 17 2017 2017 HOH HOH . W 6 HOH B 18 2018 2018 HOH HOH . W 6 HOH B 19 2019 2019 HOH HOH . W 6 HOH B 20 2020 2020 HOH HOH . W 6 HOH B 21 2021 2021 HOH HOH . W 6 HOH B 22 2022 2022 HOH HOH . W 6 HOH B 23 2023 2023 HOH HOH . W 6 HOH B 24 2024 2024 HOH HOH . W 6 HOH B 25 2025 2025 HOH HOH . W 6 HOH B 26 2026 2026 HOH HOH . W 6 HOH B 27 2027 2027 HOH HOH . W 6 HOH B 28 2028 2028 HOH HOH . W 6 HOH B 29 2029 2029 HOH HOH . W 6 HOH B 30 2030 2030 HOH HOH . X 6 HOH C 1 2001 2001 HOH HOH . X 6 HOH C 2 2002 2002 HOH HOH . X 6 HOH C 3 2003 2003 HOH HOH . X 6 HOH C 4 2004 2004 HOH HOH . X 6 HOH C 5 2005 2005 HOH HOH . X 6 HOH C 6 2006 2006 HOH HOH . X 6 HOH C 7 2007 2007 HOH HOH . X 6 HOH C 8 2008 2008 HOH HOH . X 6 HOH C 9 2009 2009 HOH HOH . X 6 HOH C 10 2010 2010 HOH HOH . X 6 HOH C 11 2011 2011 HOH HOH . X 6 HOH C 12 2012 2012 HOH HOH . X 6 HOH C 13 2013 2013 HOH HOH . X 6 HOH C 14 2014 2014 HOH HOH . X 6 HOH C 15 2015 2015 HOH HOH . X 6 HOH C 16 2016 2016 HOH HOH . X 6 HOH C 17 2017 2017 HOH HOH . X 6 HOH C 18 2018 2018 HOH HOH . X 6 HOH C 19 2019 2019 HOH HOH . X 6 HOH C 20 2020 2020 HOH HOH . X 6 HOH C 21 2021 2021 HOH HOH . X 6 HOH C 22 2022 2022 HOH HOH . X 6 HOH C 23 2023 2023 HOH HOH . X 6 HOH C 24 2024 2024 HOH HOH . Y 6 HOH D 1 2001 2001 HOH HOH . Y 6 HOH D 2 2002 2002 HOH HOH . Y 6 HOH D 3 2003 2003 HOH HOH . Y 6 HOH D 4 2004 2004 HOH HOH . Y 6 HOH D 5 2005 2005 HOH HOH . Y 6 HOH D 6 2006 2006 HOH HOH . Y 6 HOH D 7 2007 2007 HOH HOH . Y 6 HOH D 8 2008 2008 HOH HOH . Y 6 HOH D 9 2009 2009 HOH HOH . Y 6 HOH D 10 2010 2010 HOH HOH . Y 6 HOH D 11 2011 2011 HOH HOH . Y 6 HOH D 12 2012 2012 HOH HOH . Y 6 HOH D 13 2013 2013 HOH HOH . Y 6 HOH D 14 2014 2014 HOH HOH . Y 6 HOH D 15 2015 2015 HOH HOH . Y 6 HOH D 16 2016 2016 HOH HOH . Y 6 HOH D 17 2017 2017 HOH HOH . Y 6 HOH D 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . O 2 -35.887 236.73 -6.295 1 25.49 ? PA FAD 500 C 1 HETATM 2 O O1A FAD . . . O 2 -34.822 235.82 -5.742 1 24.97 ? O1A FAD 500 C 1 HETATM 3 O O2A FAD . . . O 2 -35.381 238.109 -6.676 1 27.02 ? O2A FAD 500 C 1 HETATM 4 O O5B FAD . . . O 2 -36.923 236.837 -5.088 1 25.54 ? O5B FAD 500 C 1 HETATM 5 C C5B FAD . . . O 2 -37.485 235.695 -4.531 1 23.3 ? C5B FAD 500 C 1 HETATM 6 C C4B FAD . . . O 2 -38.254 236.098 -3.276 1 23.33 ? C4B FAD 500 C 1 HETATM 7 O O4B FAD . . . O 2 -38.882 234.946 -2.721 1 24.39 ? O4B FAD 500 C 1 HETATM 8 C C3B FAD . . . O 2 -37.364 236.616 -2.173 1 23.07 ? C3B FAD 500 C 1 HETATM 9 O O3B FAD . . . O 2 -37.98 237.798 -1.692 1 24.42 ? O3B FAD 500 C 1 HETATM 10 C C2B FAD . . . O 2 -37.39 235.503 -1.139 1 21.91 ? C2B FAD 500 C 1 HETATM 11 O O2B FAD . . . O 2 -37.25 236.05 0.135 1 21.17 ? O2B FAD 500 C 1 HETATM 12 C C1B FAD . . . O 2 -38.767 234.922 -1.329 1 23.22 ? C1B FAD 500 C 1 HETATM 13 N N9A FAD . . . O 2 -38.898 233.572 -0.824 1 25.05 ? N9A FAD 500 C 1 HETATM 14 C C8A FAD . . . O 2 -38.177 232.493 -1.217 1 24.94 ? C8A FAD 500 C 1 HETATM 15 N N7A FAD . . . O 2 -38.598 231.431 -0.484 1 25.59 ? N7A FAD 500 C 1 HETATM 16 C C5A FAD . . . O 2 -39.571 231.807 0.384 1 25.7 ? C5A FAD 500 C 1 HETATM 17 C C6A FAD . . . O 2 -40.325 231.13 1.347 1 25 ? C6A FAD 500 C 1 HETATM 18 N N6A FAD . . . O 2 -40.158 229.846 1.663 1 21.92 ? N6A FAD 500 C 1 HETATM 19 N N1A FAD . . . O 2 -41.269 231.808 2.043 1 27.18 ? N1A FAD 500 C 1 HETATM 20 C C2A FAD . . . O 2 -41.448 233.143 1.817 1 28.07 ? C2A FAD 500 C 1 HETATM 21 N N3A FAD . . . O 2 -40.691 233.804 0.87 1 27.13 ? N3A FAD 500 C 1 HETATM 22 C C4A FAD . . . O 2 -39.772 233.153 0.145 1 25.9 ? C4A FAD 500 C 1 HETATM 23 N N1 FAD . . . O 2 -30.839 240.253 -13.12 1 37.68 ? N1 FAD 500 C 1 HETATM 24 C C2 FAD . . . O 2 -30.739 241.371 -13.921 1 37.86 ? C2 FAD 500 C 1 HETATM 25 O O2 FAD . . . O 2 -31.594 241.565 -14.784 1 35.74 ? O2 FAD 500 C 1 HETATM 26 N N3 FAD . . . O 2 -29.665 242.248 -13.742 1 39.01 ? N3 FAD 500 C 1 HETATM 27 C C4 FAD . . . O 2 -28.719 241.994 -12.758 1 38.14 ? C4 FAD 500 C 1 HETATM 28 O O4 FAD . . . O 2 -27.78 242.763 -12.594 1 41.23 ? O4 FAD 500 C 1 HETATM 29 C C4X FAD . . . O 2 -28.833 240.868 -11.949 1 36.75 ? C4X FAD 500 C 1 HETATM 30 N N5 FAD . . . O 2 -27.897 240.605 -10.967 1 35.09 ? N5 FAD 500 C 1 HETATM 31 C C5X FAD . . . O 2 -27.999 239.479 -10.195 1 32.29 ? C5X FAD 500 C 1 HETATM 32 C C6 FAD . . . O 2 -27.031 239.234 -9.238 1 30.62 ? C6 FAD 500 C 1 HETATM 33 C C7 FAD . . . O 2 -27.097 238.11 -8.43 1 31.05 ? C7 FAD 500 C 1 HETATM 34 C C7M FAD . . . O 2 -26.018 237.897 -7.373 1 29.44 ? C7M FAD 500 C 1 HETATM 35 C C8 FAD . . . O 2 -28.174 237.238 -8.627 1 29.73 ? C8 FAD 500 C 1 HETATM 36 C C8M FAD . . . O 2 -28.356 236.005 -7.819 1 29.78 ? C8M FAD 500 C 1 HETATM 37 C C9 FAD . . . O 2 -29.128 237.485 -9.582 1 30.27 ? C9 FAD 500 C 1 HETATM 38 C C9A FAD . . . O 2 -29.061 238.61 -10.385 1 32.26 ? C9A FAD 500 C 1 HETATM 39 N N10 FAD . . . O 2 -30.019 238.891 -11.363 1 33.54 ? N10 FAD 500 C 1 HETATM 40 C C10 FAD . . . O 2 -29.892 240.002 -12.143 1 35.21 ? C10 FAD 500 C 1 HETATM 41 C C1' FAD . . . O 2 -31.195 238 -11.696 1 34.47 ? C1' FAD 500 C 1 HETATM 42 C C2' FAD . . . O 2 -32.327 237.95 -10.689 1 32.76 ? C2' FAD 500 C 1 HETATM 43 O O2' FAD . . . O 2 -32.781 236.642 -10.812 1 31.07 ? O2' FAD 500 C 1 HETATM 44 C C3' FAD . . . O 2 -33.458 238.855 -11.129 1 31.93 ? C3' FAD 500 C 1 HETATM 45 O O3' FAD . . . O 2 -32.955 240.167 -11.22 1 34.11 ? O3' FAD 500 C 1 HETATM 46 C C4' FAD . . . O 2 -34.597 238.926 -10.13 1 29.64 ? C4' FAD 500 C 1 HETATM 47 O O4' FAD . . . O 2 -34.084 239.236 -8.835 1 26.81 ? O4' FAD 500 C 1 HETATM 48 C C5' FAD . . . O 2 -35.481 237.671 -10.141 1 26.71 ? C5' FAD 500 C 1 HETATM 49 O O5' FAD . . . O 2 -36.442 237.934 -9.137 1 26.88 ? O5' FAD 500 C 1 HETATM 50 P P FAD . . . O 2 -37.567 236.916 -8.552 1 25.1 ? P FAD 500 C 1 HETATM 51 O O1P FAD . . . O 2 -38.609 237.667 -7.782 1 23.75 ? O1P FAD 500 C 1 HETATM 52 O O2P FAD . . . O 2 -38.159 236.017 -9.612 1 23.43 ? O2P FAD 500 C 1 HETATM 53 O O3P FAD . . . O 2 -36.672 236.063 -7.509 1 24.28 ? O3P FAD 500 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #