data_2XLP # _model_server_result.job_id vwSUfZeVDk7TyWga5HzItw _model_server_result.datetime_utc '2024-10-18 06:18:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xlp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":501}' # _entry.id 2XLP # _exptl.entry_id 2XLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XLP _cell.length_a 219.708 _cell.length_b 219.708 _cell.length_c 131.441 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,R,S,T,U,V,Y 1 1 B,C,I,J,K,L,M,N,O,P,Q,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N ? 3 P N N ? 3 S N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 361 n n PA O2A NAP sing 362 n n PA O5B NAP sing 363 n n PA O3 NAP sing 364 n n O2A HOA2 NAP sing 365 n n O5B C5B NAP sing 366 n n C5B C4B NAP sing 367 n n C5B H51A NAP sing 368 n n C5B H52A NAP sing 369 n n C4B O4B NAP sing 370 n n C4B C3B NAP sing 371 n n C4B H4B NAP sing 372 n n O4B C1B NAP sing 373 n n C3B O3B NAP sing 374 n n C3B C2B NAP sing 375 n n C3B H3B NAP sing 376 n n O3B HO3A NAP sing 377 n n C2B O2B NAP sing 378 n n C2B C1B NAP sing 379 n n C2B H2B NAP sing 380 n n O2B P2B NAP sing 381 n n C1B N9A NAP sing 382 n n C1B H1B NAP sing 383 n n N9A C8A NAP sing 384 n y N9A C4A NAP sing 385 n y C8A N7A NAP doub 386 n y C8A H8A NAP sing 387 n n N7A C5A NAP sing 388 n y C5A C6A NAP sing 389 n y C5A C4A NAP doub 390 n y C6A N6A NAP sing 391 n n C6A N1A NAP doub 392 n y N6A H61A NAP sing 393 n n N6A H62A NAP sing 394 n n N1A C2A NAP sing 395 n y C2A N3A NAP doub 396 n y C2A H2A NAP sing 397 n n N3A C4A NAP sing 398 n y O3 PN NAP sing 399 n n PN O1N NAP doub 400 n n PN O2N NAP sing 401 n n PN O5D NAP sing 402 n n O5D C5D NAP sing 403 n n C5D C4D NAP sing 404 n n C5D H51N NAP sing 405 n n C5D H52N NAP sing 406 n n C4D O4D NAP sing 407 n n C4D C3D NAP sing 408 n n C4D H4D NAP sing 409 n n O4D C1D NAP sing 410 n n C3D O3D NAP sing 411 n n C3D C2D NAP sing 412 n n C3D H3D NAP sing 413 n n O3D HO3N NAP sing 414 n n C2D O2D NAP sing 415 n n C2D C1D NAP sing 416 n n C2D H2D NAP sing 417 n n O2D HO2N NAP sing 418 n n C1D N1N NAP sing 419 n n C1D H1D NAP sing 420 n n N1N C2N NAP sing 421 n y N1N C6N NAP doub 422 n y C2N C3N NAP doub 423 n y C2N H2N NAP sing 424 n n C3N C7N NAP sing 425 n n C3N C4N NAP sing 426 n y C7N O7N NAP doub 427 n n C7N N7N NAP sing 428 n n N7N H71N NAP sing 429 n n N7N H72N NAP sing 430 n n C4N C5N NAP doub 431 n y C4N H4N NAP sing 432 n n C5N C6N NAP sing 433 n y C5N H5N NAP sing 434 n n C6N H6N NAP sing 435 n n P2B O1X NAP doub 436 n n P2B O2X NAP sing 437 n n P2B O3X NAP sing 438 n n O2X HOP2 NAP sing 439 n n O3X HOP3 NAP sing 440 n n # _atom_sites.entry_id 2XLP _atom_sites.fract_transf_matrix[1][1] 0.004551 _atom_sites.fract_transf_matrix[1][2] 0.002628 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 500 500 FAD FAD . F 3 NAP A 1 501 501 NAP NAP . G 4 EPE A 1 1453 1453 EPE EPE . H 5 PEG A 1 1454 1454 PEG PEG . I 2 FAD B 1 500 500 FAD FAD . J 3 NAP B 1 501 501 NAP NAP . K 4 EPE B 1 1452 1452 EPE EPE . L 5 PEG B 1 1453 1453 PEG PEG . M 5 PEG B 1 1454 1454 PEG PEG . N 5 PEG B 1 1455 1455 PEG PEG . O 2 FAD C 1 500 500 FAD FAD . P 3 NAP C 1 501 501 NAP NAP . Q 4 EPE C 1 1452 1452 EPE EPE . R 2 FAD D 1 500 500 FAD FAD . S 3 NAP D 1 501 501 NAP NAP . T 4 EPE D 1 1453 1453 EPE EPE . U 5 PEG D 1 1454 1454 PEG PEG . V 6 HOH A 1 2001 2001 HOH HOH . V 6 HOH A 2 2002 2002 HOH HOH . V 6 HOH A 3 2003 2003 HOH HOH . V 6 HOH A 4 2004 2004 HOH HOH . V 6 HOH A 5 2005 2005 HOH HOH . V 6 HOH A 6 2006 2006 HOH HOH . V 6 HOH A 7 2007 2007 HOH HOH . V 6 HOH A 8 2008 2008 HOH HOH . V 6 HOH A 9 2009 2009 HOH HOH . V 6 HOH A 10 2010 2010 HOH HOH . V 6 HOH A 11 2011 2011 HOH HOH . V 6 HOH A 12 2012 2012 HOH HOH . V 6 HOH A 13 2013 2013 HOH HOH . V 6 HOH A 14 2014 2014 HOH HOH . V 6 HOH A 15 2015 2015 HOH HOH . V 6 HOH A 16 2016 2016 HOH HOH . V 6 HOH A 17 2017 2017 HOH HOH . V 6 HOH A 18 2018 2018 HOH HOH . V 6 HOH A 19 2019 2019 HOH HOH . V 6 HOH A 20 2020 2020 HOH HOH . V 6 HOH A 21 2021 2021 HOH HOH . V 6 HOH A 22 2022 2022 HOH HOH . V 6 HOH A 23 2023 2023 HOH HOH . V 6 HOH A 24 2024 2024 HOH HOH . W 6 HOH B 1 2001 2001 HOH HOH . W 6 HOH B 2 2002 2002 HOH HOH . W 6 HOH B 3 2003 2003 HOH HOH . W 6 HOH B 4 2004 2004 HOH HOH . W 6 HOH B 5 2005 2005 HOH HOH . W 6 HOH B 6 2006 2006 HOH HOH . W 6 HOH B 7 2007 2007 HOH HOH . W 6 HOH B 8 2008 2008 HOH HOH . W 6 HOH B 9 2009 2009 HOH HOH . W 6 HOH B 10 2010 2010 HOH HOH . W 6 HOH B 11 2011 2011 HOH HOH . W 6 HOH B 12 2012 2012 HOH HOH . W 6 HOH B 13 2013 2013 HOH HOH . W 6 HOH B 14 2014 2014 HOH HOH . W 6 HOH B 15 2015 2015 HOH HOH . W 6 HOH B 16 2016 2016 HOH HOH . W 6 HOH B 17 2017 2017 HOH HOH . W 6 HOH B 18 2018 2018 HOH HOH . W 6 HOH B 19 2019 2019 HOH HOH . W 6 HOH B 20 2020 2020 HOH HOH . W 6 HOH B 21 2021 2021 HOH HOH . W 6 HOH B 22 2022 2022 HOH HOH . W 6 HOH B 23 2023 2023 HOH HOH . W 6 HOH B 24 2024 2024 HOH HOH . W 6 HOH B 25 2025 2025 HOH HOH . W 6 HOH B 26 2026 2026 HOH HOH . W 6 HOH B 27 2027 2027 HOH HOH . W 6 HOH B 28 2028 2028 HOH HOH . W 6 HOH B 29 2029 2029 HOH HOH . W 6 HOH B 30 2030 2030 HOH HOH . X 6 HOH C 1 2001 2001 HOH HOH . X 6 HOH C 2 2002 2002 HOH HOH . X 6 HOH C 3 2003 2003 HOH HOH . X 6 HOH C 4 2004 2004 HOH HOH . X 6 HOH C 5 2005 2005 HOH HOH . X 6 HOH C 6 2006 2006 HOH HOH . X 6 HOH C 7 2007 2007 HOH HOH . X 6 HOH C 8 2008 2008 HOH HOH . X 6 HOH C 9 2009 2009 HOH HOH . X 6 HOH C 10 2010 2010 HOH HOH . X 6 HOH C 11 2011 2011 HOH HOH . X 6 HOH C 12 2012 2012 HOH HOH . X 6 HOH C 13 2013 2013 HOH HOH . X 6 HOH C 14 2014 2014 HOH HOH . X 6 HOH C 15 2015 2015 HOH HOH . X 6 HOH C 16 2016 2016 HOH HOH . X 6 HOH C 17 2017 2017 HOH HOH . X 6 HOH C 18 2018 2018 HOH HOH . X 6 HOH C 19 2019 2019 HOH HOH . X 6 HOH C 20 2020 2020 HOH HOH . X 6 HOH C 21 2021 2021 HOH HOH . X 6 HOH C 22 2022 2022 HOH HOH . X 6 HOH C 23 2023 2023 HOH HOH . X 6 HOH C 24 2024 2024 HOH HOH . Y 6 HOH D 1 2001 2001 HOH HOH . Y 6 HOH D 2 2002 2002 HOH HOH . Y 6 HOH D 3 2003 2003 HOH HOH . Y 6 HOH D 4 2004 2004 HOH HOH . Y 6 HOH D 5 2005 2005 HOH HOH . Y 6 HOH D 6 2006 2006 HOH HOH . Y 6 HOH D 7 2007 2007 HOH HOH . Y 6 HOH D 8 2008 2008 HOH HOH . Y 6 HOH D 9 2009 2009 HOH HOH . Y 6 HOH D 10 2010 2010 HOH HOH . Y 6 HOH D 11 2011 2011 HOH HOH . Y 6 HOH D 12 2012 2012 HOH HOH . Y 6 HOH D 13 2013 2013 HOH HOH . Y 6 HOH D 14 2014 2014 HOH HOH . Y 6 HOH D 15 2015 2015 HOH HOH . Y 6 HOH D 16 2016 2016 HOH HOH . Y 6 HOH D 17 2017 2017 HOH HOH . Y 6 HOH D 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . S 3 -16.343 181.853 13.897 1 50.67 ? PA NAP 501 D 1 HETATM 2 O O1A NAP . . . S 3 -16.313 180.65 14.775 1 51.11 ? O1A NAP 501 D 1 HETATM 3 O O2A NAP . . . S 3 -17.693 182.7 14.072 1 51.53 ? O2A NAP 501 D 1 HETATM 4 O O5B NAP . . . S 3 -15.248 182.975 14.23 1 50.91 ? O5B NAP 501 D 1 HETATM 5 C C5B NAP . . . S 3 -15.348 184.179 13.478 1 50.61 ? C5B NAP 501 D 1 HETATM 6 C C4B NAP . . . S 3 -13.906 184.709 13.688 1 52.48 ? C4B NAP 501 D 1 HETATM 7 O O4B NAP . . . S 3 -13.496 185.703 12.704 1 52.66 ? O4B NAP 501 D 1 HETATM 8 C C3B NAP . . . S 3 -13.712 185.342 15.091 1 53.15 ? C3B NAP 501 D 1 HETATM 9 O O3B NAP . . . S 3 -12.381 185.036 15.55 1 53.51 ? O3B NAP 501 D 1 HETATM 10 C C2B NAP . . . S 3 -13.927 186.844 14.737 1 53.36 ? C2B NAP 501 D 1 HETATM 11 O O2B NAP . . . S 3 -13.313 187.877 15.506 1 54.53 ? O2B NAP 501 D 1 HETATM 12 C C1B NAP . . . S 3 -13.079 186.877 13.45 1 53.02 ? C1B NAP 501 D 1 HETATM 13 N N9A NAP . . . S 3 -13.407 188.135 12.786 1 53.22 ? N9A NAP 501 D 1 HETATM 14 C C8A NAP . . . S 3 -14.659 188.567 12.386 1 52.81 ? C8A NAP 501 D 1 HETATM 15 N N7A NAP . . . S 3 -14.575 189.761 11.836 1 51.72 ? N7A NAP 501 D 1 HETATM 16 C C5A NAP . . . S 3 -13.262 190.156 11.853 1 52.97 ? C5A NAP 501 D 1 HETATM 17 C C6A NAP . . . S 3 -12.592 191.311 11.398 1 53.57 ? C6A NAP 501 D 1 HETATM 18 N N6A NAP . . . S 3 -13.333 192.309 10.782 1 54.93 ? N6A NAP 501 D 1 HETATM 19 N N1A NAP . . . S 3 -11.262 191.399 11.567 1 53.18 ? N1A NAP 501 D 1 HETATM 20 C C2A NAP . . . S 3 -10.589 190.39 12.169 1 53.75 ? C2A NAP 501 D 1 HETATM 21 N N3A NAP . . . S 3 -11.157 189.267 12.627 1 52.04 ? N3A NAP 501 D 1 HETATM 22 C C4A NAP . . . S 3 -12.485 189.124 12.474 1 52.7 ? C4A NAP 501 D 1 HETATM 23 O O3 NAP . . . S 3 -16.116 181.277 12.378 1 51.6 ? O3 NAP 501 D 1 HETATM 24 P PN NAP . . . S 3 -15.165 179.975 12.068 1 52.23 ? PN NAP 501 D 1 HETATM 25 O O1N NAP . . . S 3 -13.926 179.884 12.979 1 52.62 ? O1N NAP 501 D 1 HETATM 26 O O2N NAP . . . S 3 -14.748 180.226 10.571 1 50.97 ? O2N NAP 501 D 1 HETATM 27 O O5D NAP . . . S 3 -15.974 178.568 12.012 1 57.32 ? O5D NAP 501 D 1 HETATM 28 C C5D NAP . . . S 3 -16.754 178.356 13.209 1 62.06 ? C5D NAP 501 D 1 HETATM 29 C C4D NAP . . . S 3 -17.452 176.972 13.198 1 65.72 ? C4D NAP 501 D 1 HETATM 30 O O4D NAP . . . S 3 -17.057 176.227 12.008 1 67.01 ? O4D NAP 501 D 1 HETATM 31 C C3D NAP . . . S 3 -17.069 176.12 14.446 1 67.58 ? C3D NAP 501 D 1 HETATM 32 O O3D NAP . . . S 3 -18.208 176.009 15.305 1 67.39 ? O3D NAP 501 D 1 HETATM 33 C C2D NAP . . . S 3 -16.76 174.698 13.906 1 68.54 ? C2D NAP 501 D 1 HETATM 34 O O2D NAP . . . S 3 -17.894 173.831 14.024 1 69.08 ? O2D NAP 501 D 1 HETATM 35 C C1D NAP . . . S 3 -16.563 174.887 12.361 1 69.57 ? C1D NAP 501 D 1 HETATM 36 N N1N NAP . . . S 3 -15.152 174.588 11.849 1 73.13 ? N1N NAP 501 D 1 HETATM 37 C C2N NAP . . . S 3 -14.452 173.434 12.186 1 73.48 ? C2N NAP 501 D 1 HETATM 38 C C3N NAP . . . S 3 -13.118 173.173 11.673 1 74.16 ? C3N NAP 501 D 1 HETATM 39 C C7N NAP . . . S 3 -12.309 171.941 11.992 1 74.12 ? C7N NAP 501 D 1 HETATM 40 O O7N NAP . . . S 3 -11.316 172.093 12.699 1 75.09 ? O7N NAP 501 D 1 HETATM 41 N N7N NAP . . . S 3 -12.583 170.659 11.531 1 70.61 ? N7N NAP 501 D 1 HETATM 42 C C4N NAP . . . S 3 -12.536 174.153 10.805 1 72.83 ? C4N NAP 501 D 1 HETATM 43 C C5N NAP . . . S 3 -13.272 175.323 10.471 1 72.54 ? C5N NAP 501 D 1 HETATM 44 C C6N NAP . . . S 3 -14.573 175.505 11 1 73.16 ? C6N NAP 501 D 1 HETATM 45 P P2B NAP . . . S 3 -13.839 188.109 17.027 1 54.78 ? P2B NAP 501 D 1 HETATM 46 O O1X NAP . . . S 3 -15.429 187.966 17.255 1 55.72 ? O1X NAP 501 D 1 HETATM 47 O O2X NAP . . . S 3 -13.203 189.413 17.526 1 56.74 ? O2X NAP 501 D 1 HETATM 48 O O3X NAP . . . S 3 -13.31 186.792 17.87 1 55.38 ? O3X NAP 501 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #