data_2XLS
#
_model_server_result.job_id            '_LUBcs5smQRmJiN-s-NPQw' 
_model_server_result.datetime_utc      '2024-11-24 18:27:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xls 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    2XLS 
#
_exptl.entry_id    2XLS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2XLS 
_cell.length_a            219.785 
_cell.length_b            219.785 
_cell.length_c            131.226 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XLS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,N,O,P,Q,T 1 1 
B,C,H,I,J,K,L,M,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 L N N 
? 3 O N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 361 n n 
PA O2A NAP sing 362 n n 
PA O5B NAP sing 363 n n 
PA O3 NAP sing 364 n n 
O2A HOA2 NAP sing 365 n n 
O5B C5B NAP sing 366 n n 
C5B C4B NAP sing 367 n n 
C5B H51A NAP sing 368 n n 
C5B H52A NAP sing 369 n n 
C4B O4B NAP sing 370 n n 
C4B C3B NAP sing 371 n n 
C4B H4B NAP sing 372 n n 
O4B C1B NAP sing 373 n n 
C3B O3B NAP sing 374 n n 
C3B C2B NAP sing 375 n n 
C3B H3B NAP sing 376 n n 
O3B HO3A NAP sing 377 n n 
C2B O2B NAP sing 378 n n 
C2B C1B NAP sing 379 n n 
C2B H2B NAP sing 380 n n 
O2B P2B NAP sing 381 n n 
C1B N9A NAP sing 382 n n 
C1B H1B NAP sing 383 n n 
N9A C8A NAP sing 384 n y 
N9A C4A NAP sing 385 n y 
C8A N7A NAP doub 386 n y 
C8A H8A NAP sing 387 n n 
N7A C5A NAP sing 388 n y 
C5A C6A NAP sing 389 n y 
C5A C4A NAP doub 390 n y 
C6A N6A NAP sing 391 n n 
C6A N1A NAP doub 392 n y 
N6A H61A NAP sing 393 n n 
N6A H62A NAP sing 394 n n 
N1A C2A NAP sing 395 n y 
C2A N3A NAP doub 396 n y 
C2A H2A NAP sing 397 n n 
N3A C4A NAP sing 398 n y 
O3 PN NAP sing 399 n n 
PN O1N NAP doub 400 n n 
PN O2N NAP sing 401 n n 
PN O5D NAP sing 402 n n 
O5D C5D NAP sing 403 n n 
C5D C4D NAP sing 404 n n 
C5D H51N NAP sing 405 n n 
C5D H52N NAP sing 406 n n 
C4D O4D NAP sing 407 n n 
C4D C3D NAP sing 408 n n 
C4D H4D NAP sing 409 n n 
O4D C1D NAP sing 410 n n 
C3D O3D NAP sing 411 n n 
C3D C2D NAP sing 412 n n 
C3D H3D NAP sing 413 n n 
O3D HO3N NAP sing 414 n n 
C2D O2D NAP sing 415 n n 
C2D C1D NAP sing 416 n n 
C2D H2D NAP sing 417 n n 
O2D HO2N NAP sing 418 n n 
C1D N1N NAP sing 419 n n 
C1D H1D NAP sing 420 n n 
N1N C2N NAP sing 421 n y 
N1N C6N NAP doub 422 n y 
C2N C3N NAP doub 423 n y 
C2N H2N NAP sing 424 n n 
C3N C7N NAP sing 425 n n 
C3N C4N NAP sing 426 n y 
C7N O7N NAP doub 427 n n 
C7N N7N NAP sing 428 n n 
N7N H71N NAP sing 429 n n 
N7N H72N NAP sing 430 n n 
C4N C5N NAP doub 431 n y 
C4N H4N NAP sing 432 n n 
C5N C6N NAP sing 433 n y 
C5N H5N NAP sing 434 n n 
C6N H6N NAP sing 435 n n 
P2B O1X NAP doub 436 n n 
P2B O2X NAP sing 437 n n 
P2B O3X NAP sing 438 n n 
O2X HOP2 NAP sing 439 n n 
O3X HOP3 NAP sing 440 n n 
#
_atom_sites.entry_id                     2XLS 
_atom_sites.fract_transf_matrix[1][1]    0.00455 
_atom_sites.fract_transf_matrix[1][2]    0.002627 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005254 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00762 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 500 500 FAD FAD . 
F 3 NAP A 1 501 501 NAP NAP . 
G 4 EPE A 1 1451 1451 EPE EPE . 
H 2 FAD B 1 500 500 FAD FAD . 
I 3 NAP B 1 501 501 NAP NAP . 
J 4 EPE B 1 1453 1453 EPE EPE . 
K 2 FAD C 1 500 500 FAD FAD . 
L 3 NAP C 1 501 501 NAP NAP . 
M 5 PEG C 1 1453 1453 PEG PEG . 
N 2 FAD D 1 500 500 FAD FAD . 
O 3 NAP D 1 501 501 NAP NAP . 
P 4 EPE D 1 1453 1453 EPE EPE . 
Q 6 HOH A 1 2001 2001 HOH HOH . 
Q 6 HOH A 2 2002 2002 HOH HOH . 
Q 6 HOH A 3 2003 2003 HOH HOH . 
Q 6 HOH A 4 2004 2004 HOH HOH . 
Q 6 HOH A 5 2005 2005 HOH HOH . 
R 6 HOH B 1 2001 2001 HOH HOH . 
R 6 HOH B 2 2002 2002 HOH HOH . 
R 6 HOH B 3 2003 2003 HOH HOH . 
R 6 HOH B 4 2004 2004 HOH HOH . 
R 6 HOH B 5 2005 2005 HOH HOH . 
R 6 HOH B 6 2006 2006 HOH HOH . 
R 6 HOH B 7 2007 2007 HOH HOH . 
S 6 HOH C 1 2001 2001 HOH HOH . 
S 6 HOH C 2 2002 2002 HOH HOH . 
S 6 HOH C 3 2003 2003 HOH HOH . 
S 6 HOH C 4 2004 2004 HOH HOH . 
S 6 HOH C 5 2005 2005 HOH HOH . 
T 6 HOH D 1 2001 2001 HOH HOH . 
T 6 HOH D 2 2002 2002 HOH HOH . 
T 6 HOH D 3 2003 2003 HOH HOH . 
T 6 HOH D 4 2004 2004 HOH HOH . 
T 6 HOH D 5 2005 2005 HOH HOH . 
T 6 HOH D 6 2006 2006 HOH HOH . 
T 6 HOH D 7 2007 2007 HOH HOH . 
T 6 HOH D 8 2008 2008 HOH HOH . 
T 6 HOH D 9 2009 2009 HOH HOH . 
T 6 HOH D 10 2010 2010 HOH HOH . 
T 6 HOH D 11 2011 2011 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . F 3 85.671 38.966 -23.455 1 31.53 ? PA NAP 501 A 1 
HETATM 2 O O1A NAP . . . F 3 85.476 40.126 -24.367 1 31.76 ? O1A NAP 501 A 1 
HETATM 3 O O2A NAP . . . F 3 84.375 38.03 -23.573 1 31.95 ? O2A NAP 501 A 1 
HETATM 4 O O5B NAP . . . F 3 86.912 38.071 -23.804 1 32.77 ? O5B NAP 501 A 1 
HETATM 5 C C5B NAP . . . F 3 87.344 37.181 -22.793 1 32.53 ? C5B NAP 501 A 1 
HETATM 6 C C4B NAP . . . F 3 88.859 37.087 -23.147 1 33.71 ? C4B NAP 501 A 1 
HETATM 7 O O4B NAP . . . F 3 89.495 36.182 -22.238 1 33.95 ? O4B NAP 501 A 1 
HETATM 8 C C3B NAP . . . F 3 89.233 36.622 -24.584 1 33.59 ? C3B NAP 501 A 1 
HETATM 9 O O3B NAP . . . F 3 90.377 37.366 -25.042 1 31.11 ? O3B NAP 501 A 1 
HETATM 10 C C2B NAP . . . F 3 89.667 35.163 -24.353 1 34.57 ? C2B NAP 501 A 1 
HETATM 11 O O2B NAP . . . F 3 90.769 34.707 -25.147 1 35.33 ? O2B NAP 501 A 1 
HETATM 12 C C1B NAP . . . F 3 90.392 35.371 -23.02 1 34.95 ? C1B NAP 501 A 1 
HETATM 13 N N9A NAP . . . F 3 90.553 34.095 -22.332 1 36.16 ? N9A NAP 501 A 1 
HETATM 14 C C8A NAP . . . F 3 89.549 33.272 -21.878 1 36.85 ? C8A NAP 501 A 1 
HETATM 15 N N7A NAP . . . F 3 90.08 32.235 -21.28 1 37.19 ? N7A NAP 501 A 1 
HETATM 16 C C5A NAP . . . F 3 91.438 32.345 -21.309 1 36.17 ? C5A NAP 501 A 1 
HETATM 17 C C6A NAP . . . F 3 92.474 31.539 -20.819 1 35.57 ? C6A NAP 501 A 1 
HETATM 18 N N6A NAP . . . F 3 92.186 30.375 -20.153 1 37.19 ? N6A NAP 501 A 1 
HETATM 19 N N1A NAP . . . F 3 93.724 31.941 -21.002 1 36.13 ? N1A NAP 501 A 1 
HETATM 20 C C2A NAP . . . F 3 93.969 33.11 -21.655 1 37.3 ? C2A NAP 501 A 1 
HETATM 21 N N3A NAP . . . F 3 93.022 33.918 -22.159 1 36.47 ? N3A NAP 501 A 1 
HETATM 22 C C4A NAP . . . F 3 91.759 33.552 -21.982 1 36.6 ? C4A NAP 501 A 1 
HETATM 23 O O3 NAP . . . F 3 85.983 39.455 -21.917 1 34.17 ? O3 NAP 501 A 1 
HETATM 24 P PN NAP . . . F 3 86.331 41.014 -21.529 1 33.52 ? PN NAP 501 A 1 
HETATM 25 O O1N NAP . . . F 3 87.558 41.649 -22.184 1 36.18 ? O1N NAP 501 A 1 
HETATM 26 O O2N NAP . . . F 3 86.608 40.926 -19.97 1 35.11 ? O2N NAP 501 A 1 
HETATM 27 O O5D NAP . . . F 3 85.054 41.965 -21.607 1 38.26 ? O5D NAP 501 A 1 
HETATM 28 C C5D NAP . . . F 3 84.392 41.785 -22.856 1 43.69 ? C5D NAP 501 A 1 
HETATM 29 C C4D NAP . . . F 3 83.302 42.842 -22.914 1 46.75 ? C4D NAP 501 A 1 
HETATM 30 O O4D NAP . . . F 3 83.592 43.849 -21.879 1 46.25 ? O4D NAP 501 A 1 
HETATM 31 C C3D NAP . . . F 3 83.381 43.487 -24.318 1 48.37 ? C3D NAP 501 A 1 
HETATM 32 O O3D NAP . . . F 3 82.406 42.909 -25.18 1 47.63 ? O3D NAP 501 A 1 
HETATM 33 C C2D NAP . . . F 3 82.981 44.959 -24.012 1 50.24 ? C2D NAP 501 A 1 
HETATM 34 O O2D NAP . . . F 3 81.642 45.302 -24.498 1 52.55 ? O2D NAP 501 A 1 
HETATM 35 C C1D NAP . . . F 3 83.108 45.109 -22.426 1 48.49 ? C1D NAP 501 A 1 
HETATM 36 P P2B NAP . . . F 3 90.329 33.898 -26.496 1 31.73 ? P2B NAP 501 A 1 
HETATM 37 O O1X NAP . . . F 3 88.754 34.088 -26.844 1 33.14 ? O1X NAP 501 A 1 
HETATM 38 O O2X NAP . . . F 3 90.831 32.48 -26.319 1 33.67 ? O2X NAP 501 A 1 
HETATM 39 O O3X NAP . . . F 3 90.982 34.605 -27.822 1 31.47 ? O3X NAP 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#