data_2XLS
#
_model_server_result.job_id            IjUbOCJ6jygoLLlAtDKqoA 
_model_server_result.datetime_utc      '2024-11-24 18:59:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xls 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":501}' 
#
_entry.id    2XLS 
#
_exptl.entry_id    2XLS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2XLS 
_cell.length_a            219.785 
_cell.length_b            219.785 
_cell.length_c            131.226 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XLS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,N,O,P,Q,T 1 1 
B,C,H,I,J,K,L,M,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 L N N 
? 3 O N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 361 n n 
PA O2A NAP sing 362 n n 
PA O5B NAP sing 363 n n 
PA O3 NAP sing 364 n n 
O2A HOA2 NAP sing 365 n n 
O5B C5B NAP sing 366 n n 
C5B C4B NAP sing 367 n n 
C5B H51A NAP sing 368 n n 
C5B H52A NAP sing 369 n n 
C4B O4B NAP sing 370 n n 
C4B C3B NAP sing 371 n n 
C4B H4B NAP sing 372 n n 
O4B C1B NAP sing 373 n n 
C3B O3B NAP sing 374 n n 
C3B C2B NAP sing 375 n n 
C3B H3B NAP sing 376 n n 
O3B HO3A NAP sing 377 n n 
C2B O2B NAP sing 378 n n 
C2B C1B NAP sing 379 n n 
C2B H2B NAP sing 380 n n 
O2B P2B NAP sing 381 n n 
C1B N9A NAP sing 382 n n 
C1B H1B NAP sing 383 n n 
N9A C8A NAP sing 384 n y 
N9A C4A NAP sing 385 n y 
C8A N7A NAP doub 386 n y 
C8A H8A NAP sing 387 n n 
N7A C5A NAP sing 388 n y 
C5A C6A NAP sing 389 n y 
C5A C4A NAP doub 390 n y 
C6A N6A NAP sing 391 n n 
C6A N1A NAP doub 392 n y 
N6A H61A NAP sing 393 n n 
N6A H62A NAP sing 394 n n 
N1A C2A NAP sing 395 n y 
C2A N3A NAP doub 396 n y 
C2A H2A NAP sing 397 n n 
N3A C4A NAP sing 398 n y 
O3 PN NAP sing 399 n n 
PN O1N NAP doub 400 n n 
PN O2N NAP sing 401 n n 
PN O5D NAP sing 402 n n 
O5D C5D NAP sing 403 n n 
C5D C4D NAP sing 404 n n 
C5D H51N NAP sing 405 n n 
C5D H52N NAP sing 406 n n 
C4D O4D NAP sing 407 n n 
C4D C3D NAP sing 408 n n 
C4D H4D NAP sing 409 n n 
O4D C1D NAP sing 410 n n 
C3D O3D NAP sing 411 n n 
C3D C2D NAP sing 412 n n 
C3D H3D NAP sing 413 n n 
O3D HO3N NAP sing 414 n n 
C2D O2D NAP sing 415 n n 
C2D C1D NAP sing 416 n n 
C2D H2D NAP sing 417 n n 
O2D HO2N NAP sing 418 n n 
C1D N1N NAP sing 419 n n 
C1D H1D NAP sing 420 n n 
N1N C2N NAP sing 421 n y 
N1N C6N NAP doub 422 n y 
C2N C3N NAP doub 423 n y 
C2N H2N NAP sing 424 n n 
C3N C7N NAP sing 425 n n 
C3N C4N NAP sing 426 n y 
C7N O7N NAP doub 427 n n 
C7N N7N NAP sing 428 n n 
N7N H71N NAP sing 429 n n 
N7N H72N NAP sing 430 n n 
C4N C5N NAP doub 431 n y 
C4N H4N NAP sing 432 n n 
C5N C6N NAP sing 433 n y 
C5N H5N NAP sing 434 n n 
C6N H6N NAP sing 435 n n 
P2B O1X NAP doub 436 n n 
P2B O2X NAP sing 437 n n 
P2B O3X NAP sing 438 n n 
O2X HOP2 NAP sing 439 n n 
O3X HOP3 NAP sing 440 n n 
#
_atom_sites.entry_id                     2XLS 
_atom_sites.fract_transf_matrix[1][1]    0.00455 
_atom_sites.fract_transf_matrix[1][2]    0.002627 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005254 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00762 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 500 500 FAD FAD . 
F 3 NAP A 1 501 501 NAP NAP . 
G 4 EPE A 1 1451 1451 EPE EPE . 
H 2 FAD B 1 500 500 FAD FAD . 
I 3 NAP B 1 501 501 NAP NAP . 
J 4 EPE B 1 1453 1453 EPE EPE . 
K 2 FAD C 1 500 500 FAD FAD . 
L 3 NAP C 1 501 501 NAP NAP . 
M 5 PEG C 1 1453 1453 PEG PEG . 
N 2 FAD D 1 500 500 FAD FAD . 
O 3 NAP D 1 501 501 NAP NAP . 
P 4 EPE D 1 1453 1453 EPE EPE . 
Q 6 HOH A 1 2001 2001 HOH HOH . 
Q 6 HOH A 2 2002 2002 HOH HOH . 
Q 6 HOH A 3 2003 2003 HOH HOH . 
Q 6 HOH A 4 2004 2004 HOH HOH . 
Q 6 HOH A 5 2005 2005 HOH HOH . 
R 6 HOH B 1 2001 2001 HOH HOH . 
R 6 HOH B 2 2002 2002 HOH HOH . 
R 6 HOH B 3 2003 2003 HOH HOH . 
R 6 HOH B 4 2004 2004 HOH HOH . 
R 6 HOH B 5 2005 2005 HOH HOH . 
R 6 HOH B 6 2006 2006 HOH HOH . 
R 6 HOH B 7 2007 2007 HOH HOH . 
S 6 HOH C 1 2001 2001 HOH HOH . 
S 6 HOH C 2 2002 2002 HOH HOH . 
S 6 HOH C 3 2003 2003 HOH HOH . 
S 6 HOH C 4 2004 2004 HOH HOH . 
S 6 HOH C 5 2005 2005 HOH HOH . 
T 6 HOH D 1 2001 2001 HOH HOH . 
T 6 HOH D 2 2002 2002 HOH HOH . 
T 6 HOH D 3 2003 2003 HOH HOH . 
T 6 HOH D 4 2004 2004 HOH HOH . 
T 6 HOH D 5 2005 2005 HOH HOH . 
T 6 HOH D 6 2006 2006 HOH HOH . 
T 6 HOH D 7 2007 2007 HOH HOH . 
T 6 HOH D 8 2008 2008 HOH HOH . 
T 6 HOH D 9 2009 2009 HOH HOH . 
T 6 HOH D 10 2010 2010 HOH HOH . 
T 6 HOH D 11 2011 2011 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . L 3 54.769 76.61 -12.25 1 31.92 ? PA NAP 501 C 1 
HETATM 2 O O1A NAP . . . L 3 54.007 77.513 -13.172 1 31.55 ? O1A NAP 501 C 1 
HETATM 3 O O2A NAP . . . L 3 54.173 75.1 -12.287 1 32.07 ? O2A NAP 501 C 1 
HETATM 4 O O5B NAP . . . L 3 56.304 76.533 -12.632 1 33.1 ? O5B NAP 501 C 1 
HETATM 5 C C5B NAP . . . L 3 57.093 75.924 -11.606 1 32.63 ? C5B NAP 501 C 1 
HETATM 6 C C4B NAP . . . L 3 58.479 76.577 -11.922 1 33.86 ? C4B NAP 501 C 1 
HETATM 7 O O4B NAP . . . L 3 59.475 76.101 -10.982 1 33.71 ? O4B NAP 501 C 1 
HETATM 8 C C3B NAP . . . L 3 59.045 76.381 -13.385 1 33.88 ? C3B NAP 501 C 1 
HETATM 9 O O3B NAP . . . L 3 59.663 77.572 -13.948 1 31.18 ? O3B NAP 501 C 1 
HETATM 10 C C2B NAP . . . L 3 60.163 75.332 -13.134 1 34.49 ? C2B NAP 501 C 1 
HETATM 11 O O2B NAP . . . L 3 61.344 75.504 -13.913 1 35.21 ? O2B NAP 501 C 1 
HETATM 12 C C1B NAP . . . L 3 60.652 75.856 -11.787 1 34.76 ? C1B NAP 501 C 1 
HETATM 13 N N9A NAP . . . L 3 61.431 74.827 -11.144 1 35.95 ? N9A NAP 501 C 1 
HETATM 14 C C8A NAP . . . L 3 60.983 73.616 -10.699 1 36.82 ? C8A NAP 501 C 1 
HETATM 15 N N7A NAP . . . L 3 61.983 72.97 -10.112 1 37.32 ? N7A NAP 501 C 1 
HETATM 16 C C5A NAP . . . L 3 63.103 73.739 -10.152 1 36.11 ? C5A NAP 501 C 1 
HETATM 17 C C6A NAP . . . L 3 64.395 73.553 -9.698 1 35.27 ? C6A NAP 501 C 1 
HETATM 18 N N6A NAP . . . L 3 64.701 72.398 -9.066 1 37.15 ? N6A NAP 501 C 1 
HETATM 19 N N1A NAP . . . L 3 65.282 74.507 -9.856 1 35.75 ? N1A NAP 501 C 1 
HETATM 20 C C2A NAP . . . L 3 64.913 75.654 -10.478 1 37.1 ? C2A NAP 501 C 1 
HETATM 21 N N3A NAP . . . L 3 63.695 75.906 -10.961 1 36.37 ? N3A NAP 501 C 1 
HETATM 22 C C4A NAP . . . L 3 62.765 74.957 -10.8 1 36.73 ? C4A NAP 501 C 1 
HETATM 23 O O3 NAP . . . L 3 54.793 77.158 -10.695 1 34.31 ? O3 NAP 501 C 1 
HETATM 24 P PN NAP . . . L 3 54.286 78.694 -10.327 1 34.23 ? PN NAP 501 C 1 
HETATM 25 O O1N NAP . . . L 3 55.057 79.848 -11.018 1 36.59 ? O1N NAP 501 C 1 
HETATM 26 O O2N NAP . . . L 3 54.587 78.72 -8.767 1 35.16 ? O2N NAP 501 C 1 
HETATM 27 O O5D NAP . . . L 3 52.703 78.923 -10.504 1 38.3 ? O5D NAP 501 C 1 
HETATM 28 C C5D NAP . . . L 3 52.225 78.375 -11.736 1 43.67 ? C5D NAP 501 C 1 
HETATM 29 C C4D NAP . . . L 3 50.748 78.76 -11.822 1 47.12 ? C4D NAP 501 C 1 
HETATM 30 O O4D NAP . . . L 3 50.431 79.752 -10.77 1 46.73 ? O4D NAP 501 C 1 
HETATM 31 C C3D NAP . . . L 3 50.511 79.414 -13.218 1 48.73 ? C3D NAP 501 C 1 
HETATM 32 O O3D NAP . . . L 3 49.922 78.439 -14.093 1 48.21 ? O3D NAP 501 C 1 
HETATM 33 C C2D NAP . . . L 3 49.456 80.518 -12.9 1 50.28 ? C2D NAP 501 C 1 
HETATM 34 O O2D NAP . . . L 3 48.127 80.168 -13.373 1 52.87 ? O2D NAP 501 C 1 
HETATM 35 C C1D NAP . . . L 3 49.426 80.655 -11.323 1 48.55 ? C1D NAP 501 C 1 
HETATM 36 P P2B NAP . . . L 3 61.364 74.614 -15.302 1 31.99 ? P2B NAP 501 C 1 
HETATM 37 O O1X NAP . . . L 3 59.882 74.05 -15.63 1 33.48 ? O1X NAP 501 C 1 
HETATM 38 O O2X NAP . . . L 3 62.534 73.655 -15.21 1 33.58 ? O2X NAP 501 C 1 
HETATM 39 O O3X NAP . . . L 3 61.46 75.529 -16.643 1 31.57 ? O3X NAP 501 C 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           40 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           39 
#