data_2XLS
#
_model_server_result.job_id            C9zLwQ4SE_29zTxHPqawug 
_model_server_result.datetime_utc      '2024-11-28 11:56:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xls 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":501}' 
#
_entry.id    2XLS 
#
_exptl.entry_id    2XLS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2XLS 
_cell.length_a            219.785 
_cell.length_b            219.785 
_cell.length_c            131.226 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XLS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,N,O,P,Q,T 1 1 
B,C,H,I,J,K,L,M,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 L N N 
? 3 O N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 361 n n 
PA O2A NAP sing 362 n n 
PA O5B NAP sing 363 n n 
PA O3 NAP sing 364 n n 
O2A HOA2 NAP sing 365 n n 
O5B C5B NAP sing 366 n n 
C5B C4B NAP sing 367 n n 
C5B H51A NAP sing 368 n n 
C5B H52A NAP sing 369 n n 
C4B O4B NAP sing 370 n n 
C4B C3B NAP sing 371 n n 
C4B H4B NAP sing 372 n n 
O4B C1B NAP sing 373 n n 
C3B O3B NAP sing 374 n n 
C3B C2B NAP sing 375 n n 
C3B H3B NAP sing 376 n n 
O3B HO3A NAP sing 377 n n 
C2B O2B NAP sing 378 n n 
C2B C1B NAP sing 379 n n 
C2B H2B NAP sing 380 n n 
O2B P2B NAP sing 381 n n 
C1B N9A NAP sing 382 n n 
C1B H1B NAP sing 383 n n 
N9A C8A NAP sing 384 n y 
N9A C4A NAP sing 385 n y 
C8A N7A NAP doub 386 n y 
C8A H8A NAP sing 387 n n 
N7A C5A NAP sing 388 n y 
C5A C6A NAP sing 389 n y 
C5A C4A NAP doub 390 n y 
C6A N6A NAP sing 391 n n 
C6A N1A NAP doub 392 n y 
N6A H61A NAP sing 393 n n 
N6A H62A NAP sing 394 n n 
N1A C2A NAP sing 395 n y 
C2A N3A NAP doub 396 n y 
C2A H2A NAP sing 397 n n 
N3A C4A NAP sing 398 n y 
O3 PN NAP sing 399 n n 
PN O1N NAP doub 400 n n 
PN O2N NAP sing 401 n n 
PN O5D NAP sing 402 n n 
O5D C5D NAP sing 403 n n 
C5D C4D NAP sing 404 n n 
C5D H51N NAP sing 405 n n 
C5D H52N NAP sing 406 n n 
C4D O4D NAP sing 407 n n 
C4D C3D NAP sing 408 n n 
C4D H4D NAP sing 409 n n 
O4D C1D NAP sing 410 n n 
C3D O3D NAP sing 411 n n 
C3D C2D NAP sing 412 n n 
C3D H3D NAP sing 413 n n 
O3D HO3N NAP sing 414 n n 
C2D O2D NAP sing 415 n n 
C2D C1D NAP sing 416 n n 
C2D H2D NAP sing 417 n n 
O2D HO2N NAP sing 418 n n 
C1D N1N NAP sing 419 n n 
C1D H1D NAP sing 420 n n 
N1N C2N NAP sing 421 n y 
N1N C6N NAP doub 422 n y 
C2N C3N NAP doub 423 n y 
C2N H2N NAP sing 424 n n 
C3N C7N NAP sing 425 n n 
C3N C4N NAP sing 426 n y 
C7N O7N NAP doub 427 n n 
C7N N7N NAP sing 428 n n 
N7N H71N NAP sing 429 n n 
N7N H72N NAP sing 430 n n 
C4N C5N NAP doub 431 n y 
C4N H4N NAP sing 432 n n 
C5N C6N NAP sing 433 n y 
C5N H5N NAP sing 434 n n 
C6N H6N NAP sing 435 n n 
P2B O1X NAP doub 436 n n 
P2B O2X NAP sing 437 n n 
P2B O3X NAP sing 438 n n 
O2X HOP2 NAP sing 439 n n 
O3X HOP3 NAP sing 440 n n 
#
_atom_sites.entry_id                     2XLS 
_atom_sites.fract_transf_matrix[1][1]    0.00455 
_atom_sites.fract_transf_matrix[1][2]    0.002627 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005254 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00762 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 500 500 FAD FAD . 
F 3 NAP A 1 501 501 NAP NAP . 
G 4 EPE A 1 1451 1451 EPE EPE . 
H 2 FAD B 1 500 500 FAD FAD . 
I 3 NAP B 1 501 501 NAP NAP . 
J 4 EPE B 1 1453 1453 EPE EPE . 
K 2 FAD C 1 500 500 FAD FAD . 
L 3 NAP C 1 501 501 NAP NAP . 
M 5 PEG C 1 1453 1453 PEG PEG . 
N 2 FAD D 1 500 500 FAD FAD . 
O 3 NAP D 1 501 501 NAP NAP . 
P 4 EPE D 1 1453 1453 EPE EPE . 
Q 6 HOH A 1 2001 2001 HOH HOH . 
Q 6 HOH A 2 2002 2002 HOH HOH . 
Q 6 HOH A 3 2003 2003 HOH HOH . 
Q 6 HOH A 4 2004 2004 HOH HOH . 
Q 6 HOH A 5 2005 2005 HOH HOH . 
R 6 HOH B 1 2001 2001 HOH HOH . 
R 6 HOH B 2 2002 2002 HOH HOH . 
R 6 HOH B 3 2003 2003 HOH HOH . 
R 6 HOH B 4 2004 2004 HOH HOH . 
R 6 HOH B 5 2005 2005 HOH HOH . 
R 6 HOH B 6 2006 2006 HOH HOH . 
R 6 HOH B 7 2007 2007 HOH HOH . 
S 6 HOH C 1 2001 2001 HOH HOH . 
S 6 HOH C 2 2002 2002 HOH HOH . 
S 6 HOH C 3 2003 2003 HOH HOH . 
S 6 HOH C 4 2004 2004 HOH HOH . 
S 6 HOH C 5 2005 2005 HOH HOH . 
T 6 HOH D 1 2001 2001 HOH HOH . 
T 6 HOH D 2 2002 2002 HOH HOH . 
T 6 HOH D 3 2003 2003 HOH HOH . 
T 6 HOH D 4 2004 2004 HOH HOH . 
T 6 HOH D 5 2005 2005 HOH HOH . 
T 6 HOH D 6 2006 2006 HOH HOH . 
T 6 HOH D 7 2007 2007 HOH HOH . 
T 6 HOH D 8 2008 2008 HOH HOH . 
T 6 HOH D 9 2009 2009 HOH HOH . 
T 6 HOH D 10 2010 2010 HOH HOH . 
T 6 HOH D 11 2011 2011 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . O 3 85.584 38.693 15.332 1 31.68 ? PA NAP 501 D 1 
HETATM 2 O O1A NAP . . . O 3 86.293 37.781 16.267 1 31.63 ? O1A NAP 501 D 1 
HETATM 3 O O2A NAP . . . O 3 83.995 38.47 15.334 1 32.02 ? O2A NAP 501 D 1 
HETATM 4 O O5B NAP . . . O 3 85.715 40.25 15.708 1 33.09 ? O5B NAP 501 D 1 
HETATM 5 C C5B NAP . . . O 3 85.355 41.186 14.694 1 32.37 ? C5B NAP 501 D 1 
HETATM 6 C C4B NAP . . . O 3 86.332 42.332 15.031 1 33.58 ? C4B NAP 501 D 1 
HETATM 7 O O4B NAP . . . O 3 86.058 43.409 14.136 1 33.92 ? O4B NAP 501 D 1 
HETATM 8 C C3B NAP . . . O 3 86.237 42.931 16.476 1 33.86 ? C3B NAP 501 D 1 
HETATM 9 O O3B NAP . . . O 3 87.535 43.281 17.001 1 31.14 ? O3B NAP 501 D 1 
HETATM 10 C C2B NAP . . . O 3 85.422 44.234 16.286 1 34.45 ? C2B NAP 501 D 1 
HETATM 11 O O2B NAP . . . O 3 85.854 45.296 17.107 1 34.75 ? O2B NAP 501 D 1 
HETATM 12 C C1B NAP . . . O 3 86.009 44.63 14.927 1 34.86 ? C1B NAP 501 D 1 
HETATM 13 N N9A NAP . . . O 3 85.174 45.611 14.238 1 36.04 ? N9A NAP 501 D 1 
HETATM 14 C C8A NAP . . . O 3 83.91 45.428 13.74 1 36.63 ? C8A NAP 501 D 1 
HETATM 15 N N7A NAP . . . O 3 83.506 46.527 13.152 1 37.04 ? N7A NAP 501 D 1 
HETATM 16 C C5A NAP . . . O 3 84.496 47.467 13.231 1 36.2 ? C5A NAP 501 D 1 
HETATM 17 C C6A NAP . . . O 3 84.623 48.789 12.795 1 35.42 ? C6A NAP 501 D 1 
HETATM 18 N N6A NAP . . . O 3 83.587 49.377 12.13 1 37.27 ? N6A NAP 501 D 1 
HETATM 19 N N1A NAP . . . O 3 85.743 49.454 13.02 1 35.66 ? N1A NAP 501 D 1 
HETATM 20 C C2A NAP . . . O 3 86.743 48.863 13.691 1 36.84 ? C2A NAP 501 D 1 
HETATM 21 N N3A NAP . . . O 3 86.705 47.622 14.172 1 36.1 ? N3A NAP 501 D 1 
HETATM 22 C C4A NAP . . . O 3 85.593 46.898 13.935 1 36.82 ? C4A NAP 501 D 1 
HETATM 23 O O3 NAP . . . O 3 86.166 38.492 13.807 1 34.38 ? O3 NAP 501 D 1 
HETATM 24 P PN NAP . . . O 3 87.607 37.792 13.425 1 33.35 ? PN NAP 501 D 1 
HETATM 25 O O1N NAP . . . O 3 88.831 38.313 14.176 1 36.08 ? O1N NAP 501 D 1 
HETATM 26 O O2N NAP . . . O 3 87.72 38.178 11.881 1 34.95 ? O2N NAP 501 D 1 
HETATM 27 O O5D NAP . . . O 3 87.482 36.22 13.514 1 38.03 ? O5D NAP 501 D 1 
HETATM 28 C C5D NAP . . . O 3 86.831 35.882 14.731 1 43.79 ? C5D NAP 501 D 1 
HETATM 29 C C4D NAP . . . O 3 86.937 34.365 14.831 1 47.06 ? C4D NAP 501 D 1 
HETATM 30 O O4D NAP . . . O 3 87.873 33.88 13.782 1 46.35 ? O4D NAP 501 D 1 
HETATM 31 C C3D NAP . . . O 3 87.48 33.966 16.253 1 48.61 ? C3D NAP 501 D 1 
HETATM 32 O O3D NAP . . . O 3 86.442 33.621 17.189 1 47.9 ? O3D NAP 501 D 1 
HETATM 33 C C2D NAP . . . O 3 88.293 32.67 15.91 1 50.28 ? C2D NAP 501 D 1 
HETATM 34 O O2D NAP . . . O 3 87.634 31.444 16.371 1 52.46 ? O2D NAP 501 D 1 
HETATM 35 C C1D NAP . . . O 3 88.508 32.68 14.331 1 48.29 ? C1D NAP 501 D 1 
HETATM 36 P P2B NAP . . . O 3 84.906 45.464 18.38 1 30.82 ? P2B NAP 501 D 1 
HETATM 37 O O1X NAP . . . O 3 83.989 44.195 18.705 1 33.09 ? O1X NAP 501 D 1 
HETATM 38 O O2X NAP . . . O 3 84.124 46.728 18.219 1 33.82 ? O2X NAP 501 D 1 
HETATM 39 O O3X NAP . . . O 3 85.758 45.566 19.743 1 31.47 ? O3X NAP 501 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           39 
#