data_2XM0 # _model_server_result.job_id A0e8nXDkHFdOYlB3p90aFg _model_server_result.datetime_utc '2024-12-22 08:02:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xm0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1128}' # _entry.id 2XM0 # _exptl.entry_id 2XM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XM0 _cell.length_a 53.635 _cell.length_b 53.635 _cell.length_c 181.285 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 26.8175 46.449273 30.214167 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 1128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEC . A HEC 1128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 2XM0 _atom_sites.fract_transf_matrix[1][1] 0.018645 _atom_sites.fract_transf_matrix[1][2] 0.010764 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 1128 1128 HEC HEC . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2082 2082 HOH HOH . C 3 HOH A 82 2083 2083 HOH HOH . C 3 HOH A 83 2084 2084 HOH HOH . C 3 HOH A 84 2085 2085 HOH HOH . C 3 HOH A 85 2086 2086 HOH HOH . C 3 HOH A 86 2087 2087 HOH HOH . C 3 HOH A 87 2088 2088 HOH HOH . C 3 HOH A 88 2089 2089 HOH HOH . C 3 HOH A 89 2090 2090 HOH HOH . C 3 HOH A 90 2091 2091 HOH HOH . C 3 HOH A 91 2092 2092 HOH HOH . C 3 HOH A 92 2093 2093 HOH HOH . C 3 HOH A 93 2094 2094 HOH HOH . C 3 HOH A 94 2095 2095 HOH HOH . C 3 HOH A 95 2096 2096 HOH HOH . C 3 HOH A 96 2097 2097 HOH HOH . C 3 HOH A 97 2098 2098 HOH HOH . C 3 HOH A 98 2099 2099 HOH HOH . C 3 HOH A 99 2100 2100 HOH HOH . C 3 HOH A 100 2101 2101 HOH HOH . C 3 HOH A 101 2102 2102 HOH HOH . C 3 HOH A 102 2103 2103 HOH HOH . C 3 HOH A 103 2104 2104 HOH HOH . C 3 HOH A 104 2105 2105 HOH HOH . C 3 HOH A 105 2106 2106 HOH HOH . C 3 HOH A 106 2107 2107 HOH HOH . C 3 HOH A 107 2108 2108 HOH HOH . C 3 HOH A 108 2109 2109 HOH HOH . C 3 HOH A 109 2110 2110 HOH HOH . C 3 HOH A 110 2111 2111 HOH HOH . C 3 HOH A 111 2112 2112 HOH HOH . C 3 HOH A 112 2113 2113 HOH HOH . C 3 HOH A 113 2115 2115 HOH HOH . C 3 HOH A 114 2116 2116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 6.707 39.279 21.725 1 19.91 ? FE HEC 1128 A 1 HETATM 2 C CHA HEC . . . B 2 8.277 36.198 21.592 1 19.01 ? CHA HEC 1128 A 1 HETATM 3 C CHB HEC . . . B 2 6.726 39.452 18.361 1 20.55 ? CHB HEC 1128 A 1 HETATM 4 C CHC HEC . . . B 2 4.581 41.912 21.868 1 16.98 ? CHC HEC 1128 A 1 HETATM 5 C CHD HEC . . . B 2 6.453 38.977 25.124 1 21.3 ? CHD HEC 1128 A 1 HETATM 6 N NA HEC . . . B 2 7.373 38.136 20.323 1 19.91 ? NA HEC 1128 A 1 HETATM 7 C C1A HEC . . . B 2 8.016 36.852 20.42 1 21.21 ? C1A HEC 1128 A 1 HETATM 8 C C2A HEC . . . B 2 8.348 36.382 19.082 1 19.63 ? C2A HEC 1128 A 1 HETATM 9 C C3A HEC . . . B 2 7.974 37.318 18.208 1 21.45 ? C3A HEC 1128 A 1 HETATM 10 C C4A HEC . . . B 2 7.323 38.369 18.953 1 19.95 ? C4A HEC 1128 A 1 HETATM 11 C CMA HEC . . . B 2 7.943 37.15 16.725 1 23.85 ? CMA HEC 1128 A 1 HETATM 12 C CAA HEC . . . B 2 9.031 35.017 18.746 1 22.73 ? CAA HEC 1128 A 1 HETATM 13 C CBA HEC . . . B 2 8.059 33.885 18.728 1 22.76 ? CBA HEC 1128 A 1 HETATM 14 C CGA HEC . . . B 2 8.683 32.579 18.296 1 25.1 ? CGA HEC 1128 A 1 HETATM 15 O O1A HEC . . . B 2 9.416 31.964 19.105 1 28.9 ? O1A HEC 1128 A 1 HETATM 16 O O2A HEC . . . B 2 8.282 32.17 17.177 1 27.18 ? O2A HEC 1128 A 1 HETATM 17 N NB HEC . . . B 2 5.749 40.439 20.291 1 17.9 ? NB HEC 1128 A 1 HETATM 18 C C1B HEC . . . B 2 5.981 40.403 18.977 1 19.09 ? C1B HEC 1128 A 1 HETATM 19 C C2B HEC . . . B 2 5.416 41.605 18.365 1 20.44 ? C2B HEC 1128 A 1 HETATM 20 C C3B HEC . . . B 2 4.747 42.281 19.352 1 17.81 ? C3B HEC 1128 A 1 HETATM 21 C C4B HEC . . . B 2 4.949 41.533 20.588 1 17.66 ? C4B HEC 1128 A 1 HETATM 22 C CMB HEC . . . B 2 5.504 41.959 16.868 1 23.79 ? CMB HEC 1128 A 1 HETATM 23 C CAB HEC . . . B 2 3.967 43.618 19.278 1 18.94 ? CAB HEC 1128 A 1 HETATM 24 C CBB HEC . . . B 2 3.068 43.618 18.025 1 20.54 ? CBB HEC 1128 A 1 HETATM 25 N NC HEC . . . B 2 5.675 40.222 23.215 1 18.75 ? NC HEC 1128 A 1 HETATM 26 C C1C HEC . . . B 2 4.834 41.325 23.055 1 16.94 ? C1C HEC 1128 A 1 HETATM 27 C C2C HEC . . . B 2 4.37 41.811 24.338 1 19.27 ? C2C HEC 1128 A 1 HETATM 28 C C3C HEC . . . B 2 4.883 40.982 25.275 1 19.58 ? C3C HEC 1128 A 1 HETATM 29 C C4C HEC . . . B 2 5.652 39.983 24.563 1 18.85 ? C4C HEC 1128 A 1 HETATM 30 C CMC HEC . . . B 2 3.457 43.018 24.507 1 20.07 ? CMC HEC 1128 A 1 HETATM 31 C CAC HEC . . . B 2 4.705 40.976 26.81 1 21.37 ? CAC HEC 1128 A 1 HETATM 32 C CBC HEC . . . B 2 3.488 41.689 27.379 1 23.34 ? CBC HEC 1128 A 1 HETATM 33 N ND HEC . . . B 2 7.313 37.811 23.161 1 18.83 ? ND HEC 1128 A 1 HETATM 34 C C1D HEC . . . B 2 7.108 37.925 24.515 1 20.46 ? C1D HEC 1128 A 1 HETATM 35 C C2D HEC . . . B 2 7.814 36.823 25.18 1 20.61 ? C2D HEC 1128 A 1 HETATM 36 C C3D HEC . . . B 2 8.24 35.994 24.084 1 21.16 ? C3D HEC 1128 A 1 HETATM 37 C C4D HEC . . . B 2 8.028 36.654 22.847 1 22.34 ? C4D HEC 1128 A 1 HETATM 38 C CMD HEC . . . B 2 7.852 36.589 26.677 1 23.6 ? CMD HEC 1128 A 1 HETATM 39 C CAD HEC . . . B 2 9.071 34.682 24.294 1 20.67 ? CAD HEC 1128 A 1 HETATM 40 C CBD HEC . . . B 2 7.971 33.615 24.194 1 21.54 ? CBD HEC 1128 A 1 HETATM 41 C CGD HEC . . . B 2 8.529 32.216 24.375 1 24.87 ? CGD HEC 1128 A 1 HETATM 42 O O1D HEC . . . B 2 8.113 31.449 25.256 1 25.45 ? O1D HEC 1128 A 1 HETATM 43 O O2D HEC . . . B 2 9.499 31.872 23.675 1 23.82 ? O2D HEC 1128 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #